Wall clock time and date at job start Tue Mar 31 2020 12:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.67529 * 2 1 4 4 C 1.54996 * 110.61710 * 237.03703 * 2 1 3 5 5 C 1.54810 * 102.08794 * 204.47395 * 4 2 1 6 6 C 1.54102 * 104.19024 * 20.88282 * 5 4 2 7 7 H 1.09002 * 109.87880 * 242.45373 * 6 5 4 8 8 C 1.53001 * 109.88018 * 121.45476 * 6 5 4 9 9 N 1.46498 * 109.46994 * 180.02562 * 8 6 5 10 10 C 1.34777 * 120.00048 * 179.97438 * 9 8 6 11 11 O 1.21591 * 119.99643 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00377 * 180.02562 * 10 9 8 13 13 C 1.39948 * 120.00531 * 174.52683 * 12 10 9 14 14 C 1.38958 * 120.03201 * 325.04210 * 13 12 10 15 15 C 1.38158 * 120.06823 * 180.27388 * 14 13 12 16 16 C 1.38165 * 120.13527 * 0.02562 * 15 14 13 17 17 C 1.38905 * 120.07352 * 359.97438 * 16 15 14 18 18 O 1.35748 * 120.03498 * 179.97438 * 17 16 15 19 19 C 1.34838 * 116.99918 * 185.66514 * 18 17 16 20 20 H 1.07994 * 119.99928 * 5.39496 * 19 18 17 21 21 C 1.38649 * 119.99715 * 185.38406 * 19 18 17 22 22 N 1.31556 * 120.00651 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99733 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46989 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47363 * 119.99941 * 23 21 19 26 26 H 1.48500 * 109.46876 * 239.99808 * 23 21 19 27 27 C 1.38700 * 120.03737 * 145.31290 * 13 12 10 28 28 O 1.43743 * 107.29384 * 2.02912 * 6 5 4 29 29 H 1.09008 * 109.47022 * 182.96381 * 1 2 3 30 30 H 1.08998 * 109.47615 * 302.96340 * 1 2 3 31 31 H 1.09000 * 109.47032 * 62.96904 * 1 2 3 32 32 H 1.08990 * 110.90727 * 86.27721 * 4 2 1 33 33 H 1.09003 * 110.90601 * 322.66726 * 4 2 1 34 34 H 1.08998 * 110.48751 * 262.20310 * 5 4 2 35 35 H 1.09005 * 110.60226 * 139.61201 * 5 4 2 36 36 H 1.09000 * 109.47071 * 60.00003 * 8 6 5 37 37 H 1.09005 * 109.46928 * 299.99960 * 8 6 5 38 38 H 0.97002 * 120.00231 * 359.97438 * 9 8 6 39 39 H 0.97004 * 119.99476 * 354.52253 * 12 10 9 40 40 H 1.08008 * 119.96318 * 0.27520 * 14 13 12 41 41 H 1.07995 * 119.93032 * 180.02562 * 15 14 13 42 42 H 1.08003 * 119.96125 * 179.97438 * 16 15 14 43 43 H 0.96995 * 120.00645 * 179.97438 * 22 21 19 44 44 H 1.08001 * 120.07069 * 359.75275 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0197 0.0000 4 6 2.0758 -0.7893 -1.2172 5 6 3.4795 -1.2166 -0.7235 6 6 3.3839 -1.1254 0.8119 7 1 4.0872 -0.3801 1.1834 8 6 3.6935 -2.4883 1.4343 9 7 3.5996 -2.3916 2.8931 10 6 3.8329 -3.4772 3.6569 11 8 4.1218 -4.5369 3.1351 12 7 3.7460 -3.3884 4.9988 13 6 3.8748 -4.5383 5.7861 14 6 3.3840 -5.7544 5.3266 15 6 3.5058 -6.8889 6.1056 16 6 4.1151 -6.8181 7.3436 17 6 4.6078 -5.6054 7.8086 18 8 5.2058 -5.5367 9.0253 19 6 5.5559 -4.3117 9.4670 20 1 5.2802 -3.4344 8.9008 21 6 6.2697 -4.1786 10.6481 22 7 6.6059 -5.2472 11.3377 23 14 6.7542 -2.4815 11.2604 24 1 6.2604 -1.4528 10.3099 25 1 6.1544 -2.2482 12.5986 26 1 8.2333 -2.3944 11.3588 27 6 4.4875 -4.4642 7.0282 28 8 2.0384 -0.7353 1.1338 29 1 -0.3633 -1.0264 0.0531 30 1 -0.3634 0.5591 0.8622 31 1 -0.3633 0.4670 -0.9154 32 1 2.1509 -0.1476 -2.0949 33 1 1.4550 -1.6606 -1.4258 34 1 4.2406 -0.5331 -1.0997 35 1 3.6998 -2.2386 -1.0319 36 1 4.7013 -2.7951 1.1543 37 1 2.9758 -3.2245 1.0724 38 1 3.3695 -1.5461 3.3093 39 1 3.5941 -2.5274 5.4191 40 1 2.9069 -5.8127 4.3594 41 1 3.1239 -7.8329 5.7461 42 1 4.2084 -7.7066 7.9505 43 1 7.1056 -5.1541 12.1638 44 1 4.8695 -3.5201 7.3878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836290623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:38 Heat of formation + Delta-G solvation = -76.683428 kcal Electronic energy + Delta-G solvation = -25967.998546 eV Core-core repulsion = 22079.183099 eV Total energy + Delta-G solvation = -3888.815447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.46767 -39.86779 -38.66602 -36.56637 -34.90581 -34.13041 -32.70200 -32.24597 -32.02002 -29.40798 -28.65991 -27.66078 -25.27162 -24.26427 -22.08568 -21.74508 -21.67042 -21.56327 -20.26622 -18.51120 -17.82806 -17.43775 -17.09645 -16.37716 -16.01412 -15.26294 -15.22208 -14.93560 -14.73105 -14.41095 -14.20568 -14.00116 -13.85627 -13.53868 -13.36540 -13.03151 -12.92128 -12.68935 -12.36634 -12.32699 -12.10580 -11.71853 -11.64503 -11.47591 -11.32518 -11.11300 -11.10834 -10.90277 -10.74492 -10.41919 -10.07786 -9.98939 -9.59538 -9.40866 -9.11225 -8.77282 -7.64755 -7.08055 -6.41463 -4.00882 2.12372 2.45623 2.72966 3.13220 3.14224 3.19747 3.30497 3.40948 3.98514 4.06427 4.17384 4.33608 4.42896 4.51583 4.66778 4.73727 4.88312 4.94903 5.06500 5.13836 5.14932 5.31188 5.33397 5.35366 5.44107 5.55375 5.64283 5.68023 5.74800 5.76993 6.06676 6.15152 6.30254 6.33033 6.37139 6.55243 6.62521 6.86600 7.06903 7.16515 7.34888 7.39584 7.48382 7.88849 8.03105 8.10273 8.71113 9.04188 9.75661 10.76869 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002400 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.195091 B =11663.449607 C =12675.648575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.070 0.930 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.065 3.935 7 H 0.076 0.924 8 C 0.144 3.856 9 N -0.742 5.742 10 C 0.703 3.297 11 O -0.573 6.573 12 N -0.683 5.683 13 C 0.200 3.800 14 C -0.204 4.204 15 C -0.063 4.063 16 C -0.202 4.202 17 C 0.169 3.831 18 O -0.177 6.177 19 C -0.390 4.390 20 H 0.090 0.910 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.277 1.277 27 C -0.257 4.257 28 O -0.366 6.366 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.399 0.601 39 H 0.402 0.598 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.269 0.731 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 12.607 -23.174 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.088 0.912 4 C -0.188 4.188 5 C -0.187 4.187 6 C 0.007 3.993 7 H 0.094 0.906 8 C 0.019 3.981 9 N -0.399 5.399 10 C 0.404 3.596 11 O -0.450 6.450 12 N -0.329 5.329 13 C 0.106 3.894 14 C -0.225 4.225 15 C -0.082 4.082 16 C -0.222 4.222 17 C 0.115 3.885 18 O -0.081 6.081 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.279 4.279 28 O -0.286 6.286 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.233 0.767 39 H 0.237 0.763 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.710 11.385 -23.130 27.211 hybrid contribution 0.313 1.890 0.470 1.973 sum -8.396 13.275 -22.660 27.572 Atomic orbital electron populations 1.21775 0.93034 1.03203 1.02427 1.23144 0.95355 0.95216 0.84928 0.91226 1.23190 0.96119 1.01007 0.98528 1.22911 0.98085 1.03598 0.94148 1.22997 0.85463 0.96008 0.94844 0.90623 1.21401 1.02155 0.95718 0.78810 1.44961 1.76282 1.12124 1.06495 1.15884 0.78286 0.84174 0.81270 1.90946 1.53974 1.27631 1.72425 1.42578 1.75427 1.10421 1.04524 1.17168 0.96413 0.85628 0.90143 1.20545 1.08336 0.92020 1.01570 1.20516 0.97355 0.97225 0.93079 1.20229 1.07470 0.96456 0.98077 1.19066 0.91085 0.92622 0.85760 1.84022 1.66061 1.31808 1.26210 1.21310 1.36071 0.82288 1.06979 0.89243 1.25270 0.96170 0.99403 0.95723 1.70043 1.36321 1.28466 1.14992 0.85665 0.78560 0.80330 0.78930 1.19232 1.20181 1.20219 1.20794 1.10230 1.00430 0.96470 1.88948 1.27214 1.73436 1.39005 0.91609 0.91779 0.91139 0.90127 0.90184 0.90153 0.89718 0.90334 0.90924 0.76696 0.76310 0.86397 0.86667 0.86425 0.92126 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.65 37.16 0.36 -0.50 16 2 C 0.07 0.46 3.98 -25.68 -0.10 0.36 16 3 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 4 C -0.15 -0.80 6.59 -24.72 -0.16 -0.96 16 5 C -0.15 -0.84 6.64 -25.20 -0.17 -1.01 16 6 C 0.07 0.49 3.49 -26.16 -0.09 0.40 16 7 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 8 C 0.14 1.45 5.15 -4.04 -0.02 1.43 16 9 N -0.74 -8.73 5.48 -65.23 -0.36 -9.09 16 10 C 0.70 11.38 8.29 -86.92 -0.72 10.66 16 11 O -0.57 -11.43 14.14 5.29 0.07 -11.35 16 12 N -0.68 -11.05 5.34 -14.24 -0.08 -11.12 16 13 C 0.20 4.02 6.24 -83.71 -0.52 3.50 16 14 C -0.20 -4.11 8.66 -39.34 -0.34 -4.45 16 15 C -0.06 -1.23 10.03 -39.64 -0.40 -1.63 16 16 C -0.20 -4.47 9.99 -39.36 -0.39 -4.87 16 17 C 0.17 4.19 6.64 -39.13 -0.26 3.93 16 18 O -0.18 -5.12 9.76 0.03 0.00 -5.12 16 19 C -0.39 -10.94 9.44 30.88 0.29 -10.65 16 20 H 0.09 2.31 5.29 -52.49 -0.28 2.04 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 23 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 C -0.26 -5.75 9.05 -39.21 -0.35 -6.10 16 28 O -0.37 -3.34 10.75 -35.23 -0.38 -3.72 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.46 7.70 -51.93 -0.40 0.07 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.40 3.81 8.44 -40.82 -0.34 3.47 16 39 H 0.40 5.19 8.84 -40.82 -0.36 4.83 16 40 H 0.12 2.36 6.53 -52.48 -0.34 2.02 16 41 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 42 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -34.65 367.61 -8.67 -43.32 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.23 Total: 9.67 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.98 Total: -8.93 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.32 Total: -44.94 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.30 Total: -20.19 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.65 -8.67 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836290623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.364 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds