Wall clock time and date at job start Tue Mar 31 2020 12:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.67529 * 2 1 4 4 C 1.54996 * 110.61710 * 237.03703 * 2 1 3 5 5 C 1.54810 * 102.08794 * 204.47395 * 4 2 1 6 6 C 1.54102 * 104.19024 * 20.88282 * 5 4 2 7 7 H 1.09002 * 109.87880 * 242.45373 * 6 5 4 8 8 C 1.53001 * 109.88018 * 121.45476 * 6 5 4 9 9 N 1.46498 * 109.46994 * 180.02562 * 8 6 5 10 10 C 1.34777 * 120.00048 * 179.97438 * 9 8 6 11 11 O 1.21591 * 119.99643 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00377 * 180.02562 * 10 9 8 13 13 C 1.39948 * 120.00531 * 174.52683 * 12 10 9 14 14 C 1.38958 * 120.03201 * 325.04210 * 13 12 10 15 15 C 1.38158 * 120.06823 * 180.27388 * 14 13 12 16 16 C 1.38165 * 120.13527 * 0.02562 * 15 14 13 17 17 C 1.38905 * 120.07352 * 359.97438 * 16 15 14 18 18 O 1.35748 * 120.03498 * 179.97438 * 17 16 15 19 19 C 1.34838 * 116.99918 * 185.66514 * 18 17 16 20 20 H 1.07994 * 119.99928 * 5.39496 * 19 18 17 21 21 C 1.38649 * 119.99715 * 185.38406 * 19 18 17 22 22 N 1.31556 * 120.00651 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99733 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46989 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47363 * 119.99941 * 23 21 19 26 26 H 1.48500 * 109.46876 * 239.99808 * 23 21 19 27 27 C 1.38700 * 120.03737 * 145.31290 * 13 12 10 28 28 O 1.43743 * 107.29384 * 2.02912 * 6 5 4 29 29 H 1.09008 * 109.47022 * 182.96381 * 1 2 3 30 30 H 1.08998 * 109.47615 * 302.96340 * 1 2 3 31 31 H 1.09000 * 109.47032 * 62.96904 * 1 2 3 32 32 H 1.08990 * 110.90727 * 86.27721 * 4 2 1 33 33 H 1.09003 * 110.90601 * 322.66726 * 4 2 1 34 34 H 1.08998 * 110.48751 * 262.20310 * 5 4 2 35 35 H 1.09005 * 110.60226 * 139.61201 * 5 4 2 36 36 H 1.09000 * 109.47071 * 60.00003 * 8 6 5 37 37 H 1.09005 * 109.46928 * 299.99960 * 8 6 5 38 38 H 0.97002 * 120.00231 * 359.97438 * 9 8 6 39 39 H 0.97004 * 119.99476 * 354.52253 * 12 10 9 40 40 H 1.08008 * 119.96318 * 0.27520 * 14 13 12 41 41 H 1.07995 * 119.93032 * 180.02562 * 15 14 13 42 42 H 1.08003 * 119.96125 * 179.97438 * 16 15 14 43 43 H 0.96995 * 120.00645 * 179.97438 * 22 21 19 44 44 H 1.08001 * 120.07069 * 359.75275 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0197 0.0000 4 6 2.0758 -0.7893 -1.2172 5 6 3.4795 -1.2166 -0.7235 6 6 3.3839 -1.1254 0.8119 7 1 4.0872 -0.3801 1.1834 8 6 3.6935 -2.4883 1.4343 9 7 3.5996 -2.3916 2.8931 10 6 3.8329 -3.4772 3.6569 11 8 4.1218 -4.5369 3.1351 12 7 3.7460 -3.3884 4.9988 13 6 3.8748 -4.5383 5.7861 14 6 3.3840 -5.7544 5.3266 15 6 3.5058 -6.8889 6.1056 16 6 4.1151 -6.8181 7.3436 17 6 4.6078 -5.6054 7.8086 18 8 5.2058 -5.5367 9.0253 19 6 5.5559 -4.3117 9.4670 20 1 5.2802 -3.4344 8.9008 21 6 6.2697 -4.1786 10.6481 22 7 6.6059 -5.2472 11.3377 23 14 6.7542 -2.4815 11.2604 24 1 6.2604 -1.4528 10.3099 25 1 6.1544 -2.2482 12.5986 26 1 8.2333 -2.3944 11.3588 27 6 4.4875 -4.4642 7.0282 28 8 2.0384 -0.7353 1.1338 29 1 -0.3633 -1.0264 0.0531 30 1 -0.3634 0.5591 0.8622 31 1 -0.3633 0.4670 -0.9154 32 1 2.1509 -0.1476 -2.0949 33 1 1.4550 -1.6606 -1.4258 34 1 4.2406 -0.5331 -1.0997 35 1 3.6998 -2.2386 -1.0319 36 1 4.7013 -2.7951 1.1543 37 1 2.9758 -3.2245 1.0724 38 1 3.3695 -1.5461 3.3093 39 1 3.5941 -2.5274 5.4191 40 1 2.9069 -5.8127 4.3594 41 1 3.1239 -7.8329 5.7461 42 1 4.2084 -7.7066 7.9505 43 1 7.1056 -5.1541 12.1638 44 1 4.8695 -3.5201 7.3878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836290623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:37 Heat of formation + Delta-G solvation = -101.120276 kcal Electronic energy + Delta-G solvation = -25969.058208 eV Core-core repulsion = 22079.183099 eV Total energy + Delta-G solvation = -3889.875108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72447 -40.72360 -40.28067 -38.26567 -35.98576 -35.64283 -34.21844 -33.21481 -32.76063 -30.98085 -30.22995 -28.59492 -27.26975 -25.02202 -23.49938 -23.38141 -22.31534 -22.16509 -21.63959 -20.06176 -19.41043 -19.06623 -17.84163 -17.32744 -17.09312 -16.77273 -16.45640 -16.24180 -16.12464 -15.77874 -15.56458 -15.48243 -15.02689 -14.68729 -14.57251 -14.32102 -13.97388 -13.74876 -13.54252 -13.26559 -13.13569 -12.89829 -12.79578 -12.62464 -12.58270 -12.45684 -12.18764 -12.08150 -11.75520 -11.56633 -11.50994 -11.34139 -11.12049 -10.73313 -10.64402 -10.20193 -9.32476 -8.83875 -8.45242 -6.13781 0.45684 0.71521 1.36598 1.45129 1.53388 1.55015 2.03652 2.18825 2.74917 2.85901 3.17029 3.19078 3.50714 3.56255 3.71706 3.94845 4.01748 4.12639 4.20455 4.33009 4.34394 4.45832 4.48004 4.55810 4.58253 4.64744 4.72802 4.77923 4.90114 4.95721 5.03006 5.07255 5.11450 5.12810 5.21895 5.29597 5.34179 5.37718 5.49348 5.68585 5.69659 5.94300 6.00064 6.03251 6.21479 6.92159 6.99248 7.43125 7.79019 8.78076 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002400 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.195091 B =11663.449607 C =12675.648575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.064 3.936 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.147 4.147 6 C 0.070 3.930 7 H 0.088 0.912 8 C 0.141 3.859 9 N -0.723 5.723 10 C 0.701 3.299 11 O -0.612 6.612 12 N -0.675 5.675 13 C 0.207 3.793 14 C -0.199 4.199 15 C -0.050 4.050 16 C -0.214 4.214 17 C 0.135 3.865 18 O -0.226 6.226 19 C -0.411 4.411 20 H 0.103 0.897 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.249 1.249 25 H -0.269 1.269 26 H -0.271 1.271 27 C -0.260 4.260 28 O -0.391 6.391 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.412 0.588 39 H 0.419 0.581 40 H 0.126 0.874 41 H 0.154 0.846 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 14.990 -25.589 31.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.099 0.901 4 C -0.185 4.185 5 C -0.185 4.185 6 C 0.012 3.988 7 H 0.106 0.894 8 C 0.017 3.983 9 N -0.378 5.378 10 C 0.402 3.598 11 O -0.491 6.491 12 N -0.323 5.323 13 C 0.111 3.889 14 C -0.220 4.220 15 C -0.069 4.069 16 C -0.234 4.234 17 C 0.084 3.916 18 O -0.132 6.132 19 C -0.487 4.487 20 H 0.120 0.880 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.172 1.172 25 H -0.194 1.194 26 H -0.196 1.196 27 C -0.282 4.282 28 O -0.312 6.312 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.249 0.751 39 H 0.256 0.744 40 H 0.144 0.856 41 H 0.172 0.828 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.383 13.829 -25.612 30.582 hybrid contribution 0.354 1.092 0.944 1.486 sum -9.029 14.921 -24.668 30.210 Atomic orbital electron populations 1.21793 0.92863 1.02520 1.03195 1.23349 0.95608 0.95691 0.84672 0.90095 1.23189 0.95598 1.00962 0.98734 1.22941 0.98866 1.04177 0.92556 1.23008 0.85299 0.94513 0.96017 0.89384 1.21567 1.01914 0.97304 0.77511 1.44886 1.74502 1.11426 1.07034 1.16032 0.78062 0.84626 0.81108 1.90919 1.55789 1.29401 1.73019 1.42442 1.75151 1.10156 1.04576 1.17180 0.95071 0.87038 0.89595 1.20831 1.07347 0.92204 1.01664 1.20900 0.95599 0.98796 0.91574 1.20465 1.07878 0.95871 0.99213 1.19583 0.91921 0.94542 0.85548 1.83989 1.68270 1.32539 1.28412 1.21840 1.36440 0.82757 1.07701 0.87984 1.26598 0.95756 1.04203 0.95550 1.70190 1.38218 1.31426 1.15980 0.84522 0.78242 0.74765 0.78621 1.17186 1.19379 1.19616 1.20802 1.10538 0.99742 0.97155 1.88918 1.27880 1.73939 1.40441 0.92827 0.92374 0.89197 0.88132 0.90845 0.88302 0.89779 0.90185 0.92271 0.75133 0.74364 0.85586 0.82814 0.86140 0.91859 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.65 71.98 0.69 -0.79 16 2 C 0.06 0.69 3.98 31.28 0.12 0.82 16 3 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 4 C -0.15 -1.20 6.59 31.90 0.21 -0.99 16 5 C -0.15 -1.28 6.64 31.58 0.21 -1.07 16 6 C 0.07 0.90 3.49 30.97 0.11 1.01 16 7 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 8 C 0.14 2.62 5.15 86.38 0.44 3.07 16 9 N -0.72 -15.65 5.48 -478.53 -2.62 -18.27 16 10 C 0.70 21.58 8.29 179.06 1.48 23.06 16 11 O -0.61 -23.64 14.14 -4.00 -0.06 -23.70 16 12 N -0.68 -20.76 5.34 -317.24 -1.69 -22.46 16 13 C 0.21 8.08 6.24 38.13 0.24 8.31 16 14 C -0.20 -7.73 8.66 22.42 0.19 -7.53 16 15 C -0.05 -1.89 10.03 22.23 0.22 -1.67 16 16 C -0.21 -9.54 9.99 22.41 0.22 -9.32 16 17 C 0.14 6.90 6.64 22.56 0.15 7.05 16 18 O -0.23 -13.64 9.76 -22.79 -0.22 -13.86 16 19 C -0.41 -23.79 9.44 67.92 0.64 -23.15 16 20 H 0.10 5.37 5.29 -2.91 -0.02 5.36 16 21 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 22 N -0.92 -56.47 13.67 21.61 0.30 -56.18 16 23 Si 1.02 42.44 29.55 68.60 2.03 44.46 16 24 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 C -0.26 -11.68 9.05 22.51 0.20 -11.48 16 28 O -0.39 -6.40 10.75 -148.98 -1.60 -8.00 16 29 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.70 8.06 -2.39 -0.02 0.68 16 34 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.75 7.70 -2.38 -0.02 0.73 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.41 6.92 8.44 -92.71 -0.78 6.13 16 39 H 0.42 9.99 8.84 -92.71 -0.82 9.17 16 40 H 0.13 4.77 6.53 -2.91 -0.02 4.75 16 41 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 43 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.13 5.67 5.71 -2.91 -0.02 5.65 16 Total: -1.00 -77.97 367.61 1.18 -76.79 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.56 Total: 34.75 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 5.62 Total: -13.54 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -4.02 Total: -96.90 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.88 Total: -45.56 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -77.97 1.18 -76.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836290623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.330 kcal (2) G-P(sol) polarization free energy of solvation -77.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds