Wall clock time and date at job start Tue Mar 31 2020 12:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.27796 * 2 1 4 4 C 1.54945 * 110.31004 * 122.08859 * 2 1 3 5 5 C 1.55306 * 100.94689 * 155.35840 * 4 2 1 6 6 C 1.54383 * 102.24914 * 325.87004 * 5 4 2 7 7 H 1.09006 * 109.82915 * 261.84059 * 6 5 4 8 8 C 1.52998 * 109.83367 * 140.96029 * 6 5 4 9 9 N 1.46499 * 109.47459 * 180.18210 * 8 6 5 10 10 C 1.34776 * 120.00239 * 179.97438 * 9 8 6 11 11 O 1.21587 * 119.99789 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00164 * 179.97438 * 10 9 8 13 13 C 1.39943 * 120.00041 * 174.74148 * 12 10 9 14 14 C 1.38956 * 120.03209 * 146.42934 * 13 12 10 15 15 C 1.38159 * 120.06498 * 179.97438 * 14 13 12 16 16 C 1.38167 * 120.14217 * 359.97438 * 15 14 13 17 17 C 1.38911 * 120.06643 * 0.02562 * 16 15 14 18 18 O 1.35750 * 120.03391 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99940 * 5.91610 * 18 17 16 20 20 H 1.08001 * 120.00409 * 5.40800 * 19 18 17 21 21 C 1.38654 * 119.99681 * 185.40773 * 19 18 17 22 22 N 1.31555 * 120.00497 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99864 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46845 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47186 * 119.99760 * 23 21 19 26 26 H 1.48498 * 109.47213 * 240.00085 * 23 21 19 27 27 C 1.38709 * 120.03611 * 326.15331 * 13 12 10 28 28 O 1.43231 * 107.66747 * 21.39881 * 6 5 4 29 29 H 1.09004 * 109.47089 * 297.91593 * 1 2 3 30 30 H 1.09002 * 109.47073 * 57.90816 * 1 2 3 31 31 H 1.08997 * 109.47272 * 177.91036 * 1 2 3 32 32 H 1.09002 * 111.12431 * 37.43733 * 4 2 1 33 33 H 1.09004 * 111.15947 * 273.29204 * 4 2 1 34 34 H 1.08994 * 110.85061 * 207.67829 * 5 4 2 35 35 H 1.09005 * 110.84592 * 84.05484 * 5 4 2 36 36 H 1.09004 * 109.46837 * 300.18731 * 8 6 5 37 37 H 1.09001 * 109.46834 * 60.17729 * 8 6 5 38 38 H 0.96998 * 119.99741 * 359.97438 * 9 8 6 39 39 H 0.97006 * 119.99985 * 354.75456 * 12 10 9 40 40 H 1.08000 * 119.96969 * 0.02562 * 14 13 12 41 41 H 1.08004 * 119.93353 * 179.97438 * 15 14 13 42 42 H 1.08000 * 119.96732 * 180.02562 * 16 15 14 43 43 H 0.96997 * 120.00407 * 179.97438 * 22 21 19 44 44 H 1.07995 * 120.06770 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7719 1.2311 5 6 3.4699 -1.2019 0.7202 6 6 3.2112 -1.4427 -0.7827 7 1 3.0624 -2.5068 -0.9664 8 6 4.4001 -0.9362 -1.6018 9 7 4.1445 -1.1645 -3.0261 10 6 5.0607 -0.7948 -3.9429 11 8 6.0995 -0.2723 -3.5877 12 7 4.8259 -1.0053 -5.2531 13 6 5.7248 -0.5236 -6.2114 14 6 5.9374 -1.2355 -7.3856 15 6 6.8243 -0.7603 -8.3323 16 6 7.5022 0.4239 -8.1152 17 6 7.2941 1.1402 -6.9434 18 8 7.9601 2.3039 -6.7311 19 6 8.7143 2.7716 -7.7462 20 1 8.6998 2.2729 -8.7040 21 6 9.5084 3.8929 -7.5603 22 7 9.5258 4.5007 -6.3938 23 14 10.5538 4.5405 -8.9665 24 1 10.3567 3.6852 -10.1644 25 1 10.1503 5.9342 -9.2822 26 1 11.9850 4.5170 -8.5710 27 6 6.4004 0.6680 -5.9926 28 8 2.0294 -0.7176 -1.1420 29 1 -0.3633 0.4811 0.9081 30 1 -0.3633 0.5460 -0.8707 31 1 -0.3634 -1.0269 -0.0375 32 1 1.4470 -1.6402 1.4523 33 1 2.1496 -0.1189 2.1000 34 1 3.7965 -2.1195 1.2095 35 1 4.1974 -0.4033 0.8654 36 1 4.5360 0.1305 -1.4233 37 1 5.3012 -1.4721 -1.3038 38 1 3.3160 -1.5817 -3.3094 39 1 4.0336 -1.4906 -5.5321 40 1 5.4081 -2.1609 -7.5588 41 1 6.9882 -1.3156 -9.2440 42 1 8.1946 0.7930 -8.8574 43 1 10.0816 5.2849 -6.2637 44 1 6.2338 1.2252 -5.0826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836290628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:48 Heat of formation + Delta-G solvation = -102.722191 kcal Electronic energy + Delta-G solvation = -26034.977393 eV Core-core repulsion = 22145.032821 eV Total energy + Delta-G solvation = -3889.944573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.73932 -40.74213 -40.28855 -38.33909 -36.00579 -35.54771 -34.25512 -33.25631 -32.77336 -31.13721 -30.14022 -28.52606 -27.30825 -25.08684 -23.78815 -23.07454 -22.64345 -21.83910 -21.66283 -19.97989 -19.64349 -18.91167 -18.05605 -17.46294 -17.00273 -16.75385 -16.52792 -16.28572 -16.03616 -15.79733 -15.52515 -15.42916 -15.09490 -14.66326 -14.31444 -14.24795 -14.16724 -13.79462 -13.58121 -13.27023 -13.08564 -12.94762 -12.90422 -12.67808 -12.66398 -12.36204 -12.19991 -12.07643 -11.77629 -11.68684 -11.58315 -11.34256 -11.03206 -10.76388 -10.54239 -10.22054 -9.29641 -8.83019 -8.45889 -6.15527 0.47664 0.72322 1.34674 1.44296 1.51741 1.55220 2.04116 2.18722 2.71987 2.84971 3.14162 3.20134 3.50151 3.59057 3.69987 3.83834 4.12402 4.15383 4.16048 4.32571 4.38892 4.43712 4.44435 4.52264 4.59036 4.71095 4.75366 4.79057 4.84516 4.91188 5.02554 5.06207 5.09382 5.12535 5.26026 5.31554 5.34772 5.39064 5.48421 5.65066 5.75837 5.96715 6.04362 6.06916 6.23139 6.97414 6.98136 7.46785 7.81396 8.78572 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.002402 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.327106 B =11654.168589 C =12622.343751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 H 0.058 0.942 4 C -0.142 4.142 5 C -0.148 4.148 6 C 0.077 3.923 7 H 0.108 0.892 8 C 0.126 3.874 9 N -0.717 5.717 10 C 0.692 3.308 11 O -0.621 6.621 12 N -0.666 5.666 13 C 0.204 3.796 14 C -0.205 4.205 15 C -0.046 4.046 16 C -0.256 4.256 17 C 0.128 3.872 18 O -0.237 6.237 19 C -0.412 4.412 20 H 0.107 0.893 21 C -0.030 4.030 22 N -0.926 5.926 23 Si 1.025 2.975 24 H -0.246 1.246 25 H -0.268 1.268 26 H -0.269 1.269 27 C -0.214 4.214 28 O -0.391 6.391 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.415 0.585 39 H 0.427 0.573 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.124 0.876 43 H 0.272 0.728 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.871 -17.110 10.645 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.076 0.924 4 C -0.179 4.179 5 C -0.186 4.186 6 C 0.019 3.981 7 H 0.126 0.874 8 C 0.002 3.998 9 N -0.374 5.374 10 C 0.393 3.607 11 O -0.500 6.500 12 N -0.315 5.315 13 C 0.109 3.891 14 C -0.226 4.226 15 C -0.064 4.064 16 C -0.276 4.276 17 C 0.077 3.923 18 O -0.144 6.144 19 C -0.488 4.488 20 H 0.124 0.876 21 C -0.226 4.226 22 N -0.565 5.565 23 Si 0.844 3.156 24 H -0.169 1.169 25 H -0.193 1.193 26 H -0.194 1.194 27 C -0.236 4.236 28 O -0.312 6.312 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.252 0.748 39 H 0.267 0.733 40 H 0.182 0.818 41 H 0.180 0.820 42 H 0.142 0.858 43 H 0.081 0.919 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.007 -16.336 11.147 26.747 hybrid contribution 0.223 0.674 -0.257 0.755 sum -17.784 -15.663 10.890 26.081 Atomic orbital electron populations 1.21860 0.92572 1.03101 1.02822 1.23196 0.95795 0.95359 0.85187 0.92416 1.23303 0.95368 1.01334 0.97907 1.23141 0.98549 1.04148 0.92779 1.23017 0.83636 0.97015 0.94442 0.87422 1.21770 0.98789 1.00644 0.78624 1.44771 1.20900 1.65951 1.05735 1.16247 0.83723 0.79224 0.81530 1.91011 1.28502 1.50032 1.80443 1.42258 1.26956 1.59338 1.02970 1.17089 0.91700 0.90618 0.89726 1.20857 1.05185 1.02275 0.94278 1.21041 0.92977 0.93274 0.99157 1.21318 1.07664 0.99770 0.98840 1.19653 0.91665 0.86638 0.94384 1.83973 1.55907 1.33227 1.41254 1.21960 1.23172 1.12101 0.91552 0.87551 1.26749 0.98547 0.95934 1.01385 1.70238 1.40037 1.20626 1.25570 0.84446 0.76740 0.78396 0.76024 1.16888 1.19330 1.19436 1.20040 1.04198 0.99123 1.00285 1.88479 1.41943 1.64982 1.35761 0.89605 0.92954 0.91422 0.88837 0.88531 0.87409 0.90609 0.93739 0.90546 0.74758 0.73332 0.81765 0.82031 0.85810 0.91917 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.62 71.98 0.69 -0.96 16 2 C 0.06 0.89 4.08 31.26 0.13 1.01 16 3 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.14 -1.31 6.57 32.05 0.21 -1.10 16 5 C -0.15 -1.61 6.54 31.86 0.21 -1.40 16 6 C 0.08 1.14 3.59 31.06 0.11 1.25 16 7 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 8 C 0.13 2.83 5.23 86.38 0.45 3.28 16 9 N -0.72 -17.11 5.47 -478.54 -2.62 -19.73 16 10 C 0.69 23.70 8.30 179.06 1.49 25.19 16 11 O -0.62 -29.15 14.06 -3.99 -0.06 -29.20 16 12 N -0.67 -19.73 5.35 -317.24 -1.70 -21.42 16 13 C 0.20 7.81 6.27 38.13 0.24 8.05 16 14 C -0.21 -6.39 9.96 22.42 0.22 -6.16 16 15 C -0.05 -1.56 10.03 22.23 0.22 -1.34 16 16 C -0.26 -11.64 9.13 22.41 0.20 -11.44 16 17 C 0.13 7.05 6.64 22.56 0.15 7.20 16 18 O -0.24 -15.63 9.76 -22.75 -0.22 -15.85 16 19 C -0.41 -25.39 9.44 67.92 0.64 -24.75 16 20 H 0.11 5.91 5.30 -2.91 -0.02 5.90 16 21 C -0.03 -1.78 5.49 84.83 0.47 -1.31 16 22 N -0.93 -60.53 13.67 21.61 0.30 -60.24 16 23 Si 1.03 44.78 29.55 68.60 2.03 46.81 16 24 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C -0.21 -10.94 8.60 22.51 0.19 -10.74 16 28 O -0.39 -7.16 10.55 -148.98 -1.57 -8.73 16 29 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.64 8.06 -2.39 -0.02 0.62 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.97 7.85 -2.38 -0.02 0.95 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.42 7.00 8.42 -92.71 -0.78 6.21 16 39 H 0.43 8.04 8.84 -92.70 -0.82 7.22 16 40 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 42 H 0.12 5.61 5.71 -2.91 -0.02 5.59 16 43 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 44 H 0.09 5.31 6.45 -2.91 -0.02 5.29 16 Total: -1.00 -90.01 367.55 1.23 -88.79 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: -0.56 Total: 32.81 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 5.63 Total: -13.23 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -4.02 Total: -101.39 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -1.85 Total: -53.78 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -90.01 1.23 -88.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836290628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.935 kcal (2) G-P(sol) polarization free energy of solvation -90.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds