Wall clock time and date at job start Tue Mar 31 2020 12:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 O 1.45195 * 109.47208 * 179.97438 * 3 2 1 5 5 C 1.34240 * 116.99887 * 179.97438 * 4 3 2 6 6 O 1.20818 * 119.99765 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99776 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.46801 * 180.02562 * 7 5 4 9 9 N 1.46496 * 109.47021 * 179.97438 * 8 7 5 10 10 C 1.34776 * 120.00374 * 179.97438 * 9 8 7 11 11 O 1.21588 * 119.99689 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00612 * 180.02562 * 10 9 8 13 13 C 1.39956 * 120.00280 * 184.30999 * 12 10 9 14 14 C 1.39290 * 119.94904 * 144.78318 * 13 12 10 15 15 C 1.38478 * 120.43066 * 179.97438 * 14 13 12 16 16 C 1.37681 * 120.32260 * 0.29488 * 15 14 13 17 17 C 1.40749 * 119.88209 * 359.48141 * 16 15 14 18 18 C 1.41405 * 120.20939 * 180.26422 * 17 16 15 19 19 H 1.08001 * 119.99912 * 214.94508 * 18 17 16 20 20 C 1.39935 * 119.99933 * 34.95249 * 18 17 16 21 21 N 1.30823 * 120.00024 * 355.53789 * 20 18 17 22 22 Si 1.86806 * 119.99782 * 175.54311 * 20 18 17 23 23 H 1.48501 * 109.46967 * 89.99555 * 22 20 18 24 24 H 1.48501 * 109.47036 * 209.99772 * 22 20 18 25 25 H 1.48501 * 109.46921 * 329.99791 * 22 20 18 26 26 C 1.38234 * 119.94572 * 324.80404 * 13 12 10 27 27 H 1.09002 * 109.46834 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47238 * 300.00359 * 1 2 3 29 29 H 1.09001 * 109.47059 * 60.00372 * 1 2 3 30 30 H 1.08999 * 109.47719 * 239.99862 * 2 1 3 31 31 H 1.09001 * 109.47059 * 119.99628 * 2 1 3 32 32 H 1.09000 * 109.47324 * 59.99694 * 3 2 1 33 33 H 1.09007 * 109.47059 * 300.00155 * 3 2 1 34 34 H 1.08997 * 109.47074 * 59.99939 * 7 5 4 35 35 H 1.09000 * 109.47054 * 299.99589 * 7 5 4 36 36 H 1.08996 * 109.47104 * 59.99665 * 8 7 5 37 37 H 1.09000 * 109.46825 * 299.99538 * 8 7 5 38 38 H 0.97003 * 119.99946 * 0.02562 * 9 8 7 39 39 H 0.97003 * 119.99566 * 4.30506 * 12 10 9 40 40 H 1.08004 * 119.78019 * 0.02562 * 14 13 12 41 41 H 1.08002 * 119.83928 * 180.02562 * 15 14 13 42 42 H 1.08002 * 120.06101 * 179.72110 * 16 15 14 43 43 H 0.97006 * 119.99757 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.16050 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4919 1.4425 0.0006 5 6 4.1013 2.6386 0.0002 6 8 3.4433 3.6518 -0.0003 7 6 5.6063 2.7175 0.0002 8 6 6.0400 4.1847 0.0002 9 7 7.5030 4.2614 0.0009 10 6 8.1149 5.4622 0.0005 11 8 7.4527 6.4820 -0.0008 12 7 9.4608 5.5329 0.0006 13 6 10.0963 6.7765 0.0913 14 6 11.2933 6.8961 0.7935 15 6 11.9309 8.1217 0.8892 16 6 11.3848 9.2375 0.2957 17 6 10.1783 9.1310 -0.4213 18 6 9.6142 10.2714 -1.0383 19 1 8.5412 10.3856 -1.0837 20 6 10.4462 11.2519 -1.5902 21 7 11.7444 11.1576 -1.4590 22 14 9.7031 12.6954 -2.5142 23 1 9.4385 13.8069 -1.5656 24 1 10.6509 13.1534 -3.5616 25 1 8.4291 12.2732 -3.1498 26 6 9.5349 7.8842 -0.5158 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 5.9960 2.2230 -0.8896 35 1 5.9960 2.2238 0.8904 36 1 5.6503 4.6787 0.8902 37 1 5.6503 4.6788 -0.8898 38 1 8.0313 3.4479 0.0008 39 1 9.9890 4.7217 -0.0622 40 1 11.7273 6.0272 1.2658 41 1 12.8588 8.2035 1.4357 42 1 11.8833 10.1922 0.3767 43 1 12.3212 11.8375 -1.8413 44 1 8.6069 7.7925 -1.0606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836763898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:05 Heat of formation + Delta-G solvation = -127.791162 kcal Electronic energy + Delta-G solvation = -25206.648891 eV Core-core repulsion = 21315.617246 eV Total energy + Delta-G solvation = -3891.031645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71451 -41.34706 -39.19495 -38.02769 -36.49962 -36.01306 -34.82758 -34.77363 -32.29147 -31.69126 -29.67830 -27.83529 -27.21491 -25.36736 -23.25093 -22.66733 -22.49661 -22.00876 -21.56980 -19.65398 -19.24034 -18.78342 -17.98782 -17.51767 -17.36753 -16.98443 -16.72942 -16.38349 -16.02114 -15.77586 -15.44863 -15.12984 -14.79807 -14.71386 -14.57502 -13.94880 -13.76789 -13.61211 -13.54306 -13.10091 -12.99260 -12.95238 -12.90512 -12.80376 -12.58164 -12.16123 -12.14087 -12.09549 -12.04979 -11.64931 -11.54152 -11.47722 -11.20733 -11.03950 -10.68055 -10.19618 -9.27928 -8.68745 -8.44638 -6.39237 0.95021 1.03687 1.10262 1.30572 1.35923 1.45939 1.52605 1.91898 2.17979 2.24083 2.81577 3.28956 3.48382 3.71964 3.79062 3.89315 3.95397 3.99992 4.26102 4.39877 4.50068 4.51615 4.59833 4.65565 4.74845 4.75073 4.82087 5.08343 5.09235 5.15370 5.15789 5.17797 5.20934 5.25969 5.34603 5.40559 5.45436 5.75483 5.87144 6.08324 6.18059 6.21039 6.41313 6.64460 6.74644 6.99584 7.04443 7.13188 7.60595 8.43756 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.001999 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.580094 B =14002.642829 C =15243.833352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.057 3.943 4 O -0.354 6.354 5 C 0.467 3.533 6 O -0.545 6.545 7 C -0.108 4.108 8 C 0.151 3.849 9 N -0.720 5.720 10 C 0.693 3.307 11 O -0.621 6.621 12 N -0.665 5.665 13 C 0.164 3.836 14 C -0.233 4.233 15 C -0.098 4.098 16 C -0.185 4.185 17 C 0.079 3.921 18 C -0.506 4.506 19 H 0.057 0.943 20 C 0.032 3.968 21 N -0.839 5.839 22 Si 0.984 3.016 23 H -0.260 1.260 24 H -0.261 1.261 25 H -0.269 1.269 26 C -0.224 4.224 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.420 0.580 39 H 0.421 0.579 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.111 0.889 43 H 0.285 0.715 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 -25.628 2.442 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.016 4.016 4 O -0.271 6.271 5 C 0.311 3.689 6 O -0.435 6.435 7 C -0.145 4.145 8 C 0.026 3.974 9 N -0.379 5.379 10 C 0.393 3.607 11 O -0.500 6.500 12 N -0.314 5.314 13 C 0.070 3.930 14 C -0.255 4.255 15 C -0.116 4.116 16 C -0.205 4.205 17 C 0.076 3.924 18 C -0.537 4.537 19 H 0.075 0.925 20 C -0.180 4.180 21 N -0.467 5.467 22 Si 0.805 3.195 23 H -0.185 1.185 24 H -0.185 1.185 25 H -0.194 1.194 26 C -0.246 4.246 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.259 0.741 39 H 0.259 0.741 40 H 0.156 0.844 41 H 0.144 0.856 42 H 0.129 0.871 43 H 0.095 0.905 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.215 -24.386 2.388 27.378 hybrid contribution -0.167 0.547 -0.550 0.794 sum -12.382 -23.839 1.838 26.925 Atomic orbital electron populations 1.21715 0.93342 1.03380 1.02398 1.21517 0.96750 0.92878 1.04296 1.23368 0.75496 1.00326 1.02419 1.86468 1.24337 1.32616 1.83655 1.23890 0.92651 0.81009 0.71316 1.90743 1.68292 1.37714 1.46726 1.21447 0.86473 0.96589 1.09983 1.20757 0.78457 0.96059 1.02113 1.44597 1.06976 1.06263 1.80070 1.16180 0.82156 0.84389 0.77941 1.90982 1.65263 1.35755 1.57964 1.42213 1.04438 1.08285 1.76476 1.17311 0.93827 0.84302 0.97569 1.20552 0.98224 0.98619 1.08062 1.20904 0.99135 0.92483 0.99123 1.21552 0.99072 0.98809 1.01085 1.17898 0.92666 0.92115 0.89678 1.19664 0.93967 1.04690 1.35398 0.92477 1.26638 0.95009 1.00552 0.95814 1.69816 1.04792 1.34056 1.37987 0.85183 0.78755 0.77188 0.78363 1.18468 1.18528 1.19378 1.21237 1.02854 0.93053 1.07469 0.90374 0.92319 0.92371 0.90190 0.90137 0.91599 0.91660 0.83412 0.83292 0.92892 0.93087 0.74127 0.74083 0.84438 0.85627 0.87087 0.90461 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 71.98 0.71 -0.33 16 2 C -0.12 -1.02 6.31 30.59 0.19 -0.83 16 3 C 0.06 0.82 5.47 71.98 0.39 1.21 16 4 O -0.35 -5.61 10.22 -51.51 -0.53 -6.14 16 5 C 0.47 8.76 7.96 71.24 0.57 9.33 16 6 O -0.54 -15.23 15.73 21.99 0.35 -14.88 16 7 C -0.11 -1.24 5.93 29.85 0.18 -1.06 16 8 C 0.15 3.41 4.96 86.38 0.43 3.83 16 9 N -0.72 -15.81 5.56 -478.55 -2.66 -18.47 16 10 C 0.69 24.74 8.40 179.06 1.50 26.25 16 11 O -0.62 -30.40 13.78 -3.99 -0.06 -30.45 16 12 N -0.67 -22.27 5.34 -317.33 -1.69 -23.97 16 13 C 0.16 7.37 6.29 38.10 0.24 7.61 16 14 C -0.23 -9.58 9.97 22.58 0.23 -9.36 16 15 C -0.10 -4.44 10.01 22.20 0.22 -4.22 16 16 C -0.18 -10.14 8.67 22.75 0.20 -9.94 16 17 C 0.08 4.68 5.55 -21.31 -0.12 4.56 16 18 C -0.51 -30.57 9.04 23.46 0.21 -30.35 16 19 H 0.06 3.49 7.85 -2.91 -0.02 3.47 16 20 C 0.03 1.74 5.42 85.25 0.46 2.20 16 21 N -0.84 -46.24 10.61 21.82 0.23 -46.01 16 22 Si 0.98 42.23 29.56 68.60 2.03 44.26 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C -0.22 -12.44 8.43 22.85 0.19 -12.25 16 27 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 33 H 0.06 1.00 8.13 -2.38 -0.02 0.98 16 34 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 37 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 38 H 0.42 4.76 8.49 -92.71 -0.79 3.97 16 39 H 0.42 9.43 8.84 -92.71 -0.82 8.61 16 40 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 42 H 0.11 6.37 6.15 -2.91 -0.02 6.35 16 43 H 0.28 14.16 8.30 -92.70 -0.77 13.39 16 44 H 0.09 5.25 6.22 -2.91 -0.02 5.23 16 Total: -1.00 -83.47 375.88 2.70 -80.76 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.57 Total: 28.26 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 5.61 Total: -13.36 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -4.12 Total: -88.45 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.24 Total: -51.47 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -83.47 2.70 -80.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836763898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.029 kcal (2) G-P(sol) polarization free energy of solvation -83.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds