Wall clock time and date at job start Tue Mar 31 2020 13:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00184 * 2 1 4 4 O 1.20833 * 119.99801 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00470 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47732 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.47736 * 180.02562 * 6 5 3 8 8 C 1.38306 * 119.96299 * 270.02453 * 7 6 5 9 9 C 1.38262 * 120.13658 * 180.02562 * 8 7 6 10 10 C 1.38134 * 120.07414 * 359.67881 * 9 8 7 11 11 C 1.38853 * 119.92468 * 0.57368 * 10 9 8 12 12 N 1.39941 * 120.06777 * 179.72210 * 11 10 9 13 13 C 1.34780 * 119.99989 * 326.56630 * 12 11 10 14 14 O 1.21583 * 120.00249 * 354.68839 * 13 12 11 15 15 N 1.34781 * 119.99875 * 174.68326 * 13 12 11 16 16 C 1.46500 * 119.99953 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.47037 * 35.00225 * 16 15 13 18 18 C 1.53002 * 109.47106 * 275.00527 * 16 15 13 19 19 C 1.50701 * 109.47086 * 155.00452 * 16 15 13 20 20 H 1.08000 * 119.99431 * 359.97438 * 19 16 15 21 21 C 1.37873 * 119.99722 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00212 * 0.02562 * 21 19 16 23 23 Si 1.86805 * 119.99735 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46988 * 59.99970 * 23 21 19 25 25 H 1.48498 * 109.47043 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46971 * 300.00151 * 23 21 19 27 27 C 1.38091 * 119.96652 * 89.99647 * 7 6 5 28 28 H 1.08994 * 109.47406 * 300.00294 * 1 2 3 29 29 H 1.09003 * 109.46685 * 59.99962 * 1 2 3 30 30 H 1.09000 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46938 * 59.99994 * 5 3 2 32 32 H 1.08998 * 109.47484 * 300.00399 * 5 3 2 33 33 H 1.09003 * 109.46926 * 59.99972 * 6 5 3 34 34 H 1.09006 * 109.46775 * 300.00489 * 6 5 3 35 35 H 1.08000 * 119.92964 * 359.97438 * 8 7 6 36 36 H 1.08005 * 119.96005 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.04111 * 180.29461 * 10 9 8 38 38 H 0.96997 * 120.00395 * 146.83762 * 12 11 10 39 39 H 0.97005 * 120.00100 * 0.02562 * 15 13 12 40 40 H 1.09004 * 109.47101 * 60.00188 * 18 16 15 41 41 H 1.09005 * 109.46669 * 179.97438 * 18 16 15 42 42 H 1.09003 * 109.46926 * 299.99765 * 18 16 15 43 43 H 0.97002 * 119.99777 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.03425 * 0.02807 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 0.0011 7 6 5.5051 2.8210 0.0011 8 6 6.1950 2.8562 1.1992 9 6 7.5757 2.9292 1.2034 10 6 8.2708 2.9604 0.0101 11 6 7.5808 2.9305 -1.1945 12 7 8.2817 2.9679 -2.4051 13 6 9.4299 3.6676 -2.4977 14 8 9.8068 4.3442 -1.5605 15 7 10.1604 3.6172 -3.6293 16 6 11.4082 4.3782 -3.7301 17 1 11.9034 4.3943 -2.7592 18 6 11.0978 5.8109 -4.1682 19 6 12.3128 3.7274 -4.7447 20 1 11.9905 2.8359 -5.2622 21 6 13.5516 4.2702 -5.0121 22 7 13.9441 5.3555 -4.3815 23 14 14.6733 3.4632 -6.2692 24 1 13.9986 3.4401 -7.5919 25 1 15.9380 4.2346 -6.3715 26 1 14.9750 2.0730 -5.8431 27 6 6.1938 2.8575 -1.1953 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9558 0.7810 0.8907 33 1 3.6101 3.2360 0.8911 34 1 3.6107 3.2364 -0.8889 35 1 5.6540 2.8275 2.1335 36 1 8.1115 2.9570 2.1407 37 1 9.3495 3.0126 0.0140 38 1 7.9392 2.4936 -3.1788 39 1 9.8595 3.0776 -4.3772 40 1 10.4435 6.2816 -3.4343 41 1 12.0263 6.3771 -4.2428 42 1 10.6026 5.7947 -5.1391 43 1 14.8156 5.7375 -4.5700 44 1 5.6545 2.8300 -2.1306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881095181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:04 Heat of formation + Delta-G solvation = -99.159122 kcal Electronic energy + Delta-G solvation = -25546.224010 eV Core-core repulsion = 21656.433944 eV Total energy + Delta-G solvation = -3889.790066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84664 -40.21796 -38.64722 -36.96359 -35.41400 -34.44899 -33.69777 -32.38685 -30.42972 -29.76929 -28.28964 -27.89103 -25.27004 -25.00811 -22.76463 -22.17013 -21.15276 -20.44779 -19.70544 -18.21661 -18.06069 -17.11814 -16.99646 -16.80834 -16.16376 -15.84992 -15.44873 -15.00190 -14.61825 -14.26489 -14.08896 -14.04895 -13.62537 -13.34141 -13.28465 -13.04929 -12.77834 -12.49977 -12.41499 -12.10607 -11.78080 -11.64667 -11.41063 -11.20397 -11.11720 -11.07563 -10.99232 -10.82077 -10.77876 -10.35615 -10.24942 -10.02762 -9.44875 -9.07590 -8.70731 -8.58432 -8.10259 -7.73015 -6.14303 -4.23792 1.41397 1.45295 1.84626 2.37657 3.16035 3.24274 3.29901 3.32019 3.63514 4.03806 4.30496 4.32142 4.63092 4.66462 4.70033 4.77786 4.87626 4.90311 5.02390 5.12562 5.18214 5.19908 5.21869 5.37638 5.52933 5.64457 5.78359 5.85310 5.99140 6.07689 6.45533 6.48927 6.65857 6.73592 6.79702 6.96193 7.10820 7.20105 7.25807 7.37271 7.43423 7.59963 7.81233 7.97356 8.13236 8.70064 8.82339 9.21014 9.44520 10.91653 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026530 B = 0.001996 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.156120 B =14027.310919 C =14531.047478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.508 6.508 5 C -0.108 4.108 6 C -0.064 4.064 7 C -0.071 4.071 8 C -0.142 4.142 9 C -0.097 4.097 10 C -0.122 4.122 11 C 0.187 3.813 12 N -0.697 5.697 13 C 0.692 3.308 14 O -0.581 6.581 15 N -0.719 5.719 16 C 0.280 3.720 17 H 0.050 0.950 18 C -0.148 4.148 19 C -0.535 4.535 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.903 3.097 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.152 4.152 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.402 0.598 39 H 0.386 0.614 40 H 0.015 0.985 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.265 0.735 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.598 -10.969 8.183 26.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.303 3.697 4 O -0.395 6.395 5 C -0.146 4.146 6 C -0.102 4.102 7 C -0.072 4.072 8 C -0.161 4.161 9 C -0.116 4.116 10 C -0.142 4.142 11 C 0.090 3.910 12 N -0.345 5.345 13 C 0.392 3.608 14 O -0.458 6.458 15 N -0.370 5.370 16 C 0.178 3.822 17 H 0.068 0.932 18 C -0.207 4.207 19 C -0.573 4.573 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.202 1.202 27 C -0.173 4.173 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.237 0.763 39 H 0.218 0.782 40 H 0.034 0.966 41 H 0.109 0.891 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.170 -9.881 8.963 25.875 hybrid contribution 0.116 -0.768 -1.523 1.709 sum -22.054 -10.649 7.440 25.596 Atomic orbital electron populations 1.23270 0.76320 1.03717 1.02596 1.86522 1.23504 1.33681 1.84138 1.23968 0.92398 0.81240 0.72082 1.90687 1.67348 1.36328 1.45161 1.21446 0.86715 0.99946 1.06469 1.20349 0.91421 0.93795 1.04615 1.19362 0.94239 1.00775 0.92812 1.20906 0.94258 1.03837 0.97120 1.21011 0.93948 0.98854 0.97750 1.21324 1.01572 1.00508 0.90813 1.17523 0.90181 0.97643 0.85646 1.42899 1.24989 1.54403 1.12213 1.16169 0.79773 0.80155 0.84663 1.90893 1.71204 1.45128 1.38585 1.45884 1.25758 1.51255 1.14055 1.18692 0.77838 0.87536 0.98090 0.93245 1.22111 1.01713 0.99553 0.97348 1.21156 1.00884 1.11796 1.23483 0.92123 1.24881 0.97653 0.94888 0.96272 1.69895 1.20495 1.20245 1.41338 0.86485 0.79756 0.79332 0.81366 1.20181 1.21105 1.20184 1.20683 0.91927 1.06627 0.98103 0.91877 0.91862 0.88085 0.87293 0.87272 0.89985 0.90078 0.86350 0.85901 0.84374 0.76329 0.78162 0.96576 0.89067 0.95515 0.92466 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.93 10.57 -39.26 -0.41 -3.35 16 3 C 0.46 4.09 7.96 36.00 0.29 4.38 16 4 O -0.51 -5.95 15.73 -18.76 -0.30 -6.25 16 5 C -0.11 -0.75 5.79 -27.89 -0.16 -0.91 16 6 C -0.06 -0.55 4.63 -27.89 -0.13 -0.68 16 7 C -0.07 -0.74 5.13 -104.65 -0.54 -1.28 16 8 C -0.14 -1.52 9.70 -39.55 -0.38 -1.90 16 9 C -0.10 -1.21 10.04 -39.61 -0.40 -1.61 16 10 C -0.12 -1.89 8.65 -39.39 -0.34 -2.23 16 11 C 0.19 2.73 6.28 -83.69 -0.53 2.21 16 12 N -0.70 -10.53 5.35 -14.22 -0.08 -10.60 16 13 C 0.69 13.87 8.27 -86.91 -0.72 13.15 16 14 O -0.58 -13.94 13.70 5.29 0.07 -13.86 16 15 N -0.72 -14.71 5.07 -59.81 -0.30 -15.02 16 16 C 0.28 7.07 2.56 -69.08 -0.18 6.89 16 17 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 18 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 19 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.64 11.32 55.43 0.63 -24.01 16 23 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 C -0.15 -1.78 9.61 -39.40 -0.38 -2.16 16 28 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.70 8.04 -51.93 -0.42 0.29 16 34 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.14 2.50 6.42 -52.49 -0.34 2.16 16 38 H 0.40 4.60 8.83 -40.82 -0.36 4.24 16 39 H 0.39 6.70 8.56 -40.82 -0.35 6.35 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 375.81 15.07 5.66 5.66 Total: -1.00 -33.04 375.81 -8.55 -41.60 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.36 Total: 9.27 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.45 Total: 1.18 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.25 Total: -49.64 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.64 Total: -23.46 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.04 -8.55 -41.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881095181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.563 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds