Wall clock time and date at job start Tue Mar 31 2020 13:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00184 * 2 1 4 4 O 1.20833 * 119.99801 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00470 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47732 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.47736 * 180.02562 * 6 5 3 8 8 C 1.38306 * 119.96299 * 270.02453 * 7 6 5 9 9 C 1.38262 * 120.13658 * 180.02562 * 8 7 6 10 10 C 1.38134 * 120.07414 * 359.67881 * 9 8 7 11 11 C 1.38853 * 119.92468 * 0.57368 * 10 9 8 12 12 N 1.39941 * 120.06777 * 179.72210 * 11 10 9 13 13 C 1.34780 * 119.99989 * 326.56630 * 12 11 10 14 14 O 1.21583 * 120.00249 * 354.68839 * 13 12 11 15 15 N 1.34781 * 119.99875 * 174.68326 * 13 12 11 16 16 C 1.46500 * 119.99953 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.47037 * 35.00225 * 16 15 13 18 18 C 1.53002 * 109.47106 * 275.00527 * 16 15 13 19 19 C 1.50701 * 109.47086 * 155.00452 * 16 15 13 20 20 H 1.08000 * 119.99431 * 359.97438 * 19 16 15 21 21 C 1.37873 * 119.99722 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00212 * 0.02562 * 21 19 16 23 23 Si 1.86805 * 119.99735 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46988 * 59.99970 * 23 21 19 25 25 H 1.48498 * 109.47043 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46971 * 300.00151 * 23 21 19 27 27 C 1.38091 * 119.96652 * 89.99647 * 7 6 5 28 28 H 1.08994 * 109.47406 * 300.00294 * 1 2 3 29 29 H 1.09003 * 109.46685 * 59.99962 * 1 2 3 30 30 H 1.09000 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46938 * 59.99994 * 5 3 2 32 32 H 1.08998 * 109.47484 * 300.00399 * 5 3 2 33 33 H 1.09003 * 109.46926 * 59.99972 * 6 5 3 34 34 H 1.09006 * 109.46775 * 300.00489 * 6 5 3 35 35 H 1.08000 * 119.92964 * 359.97438 * 8 7 6 36 36 H 1.08005 * 119.96005 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.04111 * 180.29461 * 10 9 8 38 38 H 0.96997 * 120.00395 * 146.83762 * 12 11 10 39 39 H 0.97005 * 120.00100 * 0.02562 * 15 13 12 40 40 H 1.09004 * 109.47101 * 60.00188 * 18 16 15 41 41 H 1.09005 * 109.46669 * 179.97438 * 18 16 15 42 42 H 1.09003 * 109.46926 * 299.99765 * 18 16 15 43 43 H 0.97002 * 119.99777 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.03425 * 0.02807 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 0.0011 7 6 5.5051 2.8210 0.0011 8 6 6.1950 2.8562 1.1992 9 6 7.5757 2.9292 1.2034 10 6 8.2708 2.9604 0.0101 11 6 7.5808 2.9305 -1.1945 12 7 8.2817 2.9679 -2.4051 13 6 9.4299 3.6676 -2.4977 14 8 9.8068 4.3442 -1.5605 15 7 10.1604 3.6172 -3.6293 16 6 11.4082 4.3782 -3.7301 17 1 11.9034 4.3943 -2.7592 18 6 11.0978 5.8109 -4.1682 19 6 12.3128 3.7274 -4.7447 20 1 11.9905 2.8359 -5.2622 21 6 13.5516 4.2702 -5.0121 22 7 13.9441 5.3555 -4.3815 23 14 14.6733 3.4632 -6.2692 24 1 13.9986 3.4401 -7.5919 25 1 15.9380 4.2346 -6.3715 26 1 14.9750 2.0730 -5.8431 27 6 6.1938 2.8575 -1.1953 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9558 0.7810 0.8907 33 1 3.6101 3.2360 0.8911 34 1 3.6107 3.2364 -0.8889 35 1 5.6540 2.8275 2.1335 36 1 8.1115 2.9570 2.1407 37 1 9.3495 3.0126 0.0140 38 1 7.9392 2.4936 -3.1788 39 1 9.8595 3.0776 -4.3772 40 1 10.4435 6.2816 -3.4343 41 1 12.0263 6.3771 -4.2428 42 1 10.6026 5.7947 -5.1391 43 1 14.8156 5.7375 -4.5700 44 1 5.6545 2.8300 -2.1306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881095181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:03 Heat of formation + Delta-G solvation = -119.970590 kcal Electronic energy + Delta-G solvation = -25547.126463 eV Core-core repulsion = 21656.433944 eV Total energy + Delta-G solvation = -3890.692519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64531 -41.41742 -39.86205 -37.64593 -36.99057 -35.90927 -34.75664 -34.18847 -31.44874 -31.08483 -29.68264 -28.52807 -27.33297 -25.75188 -24.15978 -23.19293 -22.28969 -21.66444 -21.10062 -19.76336 -18.82385 -18.33436 -17.71528 -17.62911 -17.43883 -17.24330 -16.71335 -16.53640 -15.83322 -15.80056 -15.13585 -14.93163 -14.71709 -14.53852 -14.37262 -14.14593 -13.81930 -13.74113 -13.67083 -13.16424 -12.97941 -12.88970 -12.75425 -12.68452 -12.57775 -12.26509 -12.23923 -12.14245 -11.89218 -11.74612 -11.53215 -11.34341 -11.11524 -11.02117 -10.59691 -9.84993 -9.66830 -8.93690 -8.16956 -6.34496 0.41433 0.46368 1.20235 1.45950 1.48303 1.55962 1.78776 1.82557 2.19183 2.42775 2.92861 3.13529 3.44625 3.67912 3.95308 3.97414 4.17598 4.24317 4.33347 4.34208 4.36711 4.51352 4.59425 4.62435 4.67028 4.75025 4.75517 4.92528 4.97372 5.05828 5.09316 5.18631 5.34916 5.43354 5.45535 5.50037 5.58376 5.66398 5.68621 5.71439 5.85891 6.09073 6.17141 6.28293 6.72871 6.74498 7.23667 7.34364 7.67899 8.89323 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026530 B = 0.001996 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.156120 B =14027.310919 C =14531.047478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.462 3.538 4 O -0.542 6.542 5 C -0.103 4.103 6 C -0.059 4.059 7 C -0.061 4.061 8 C -0.131 4.131 9 C -0.102 4.102 10 C -0.152 4.152 11 C 0.158 3.842 12 N -0.678 5.678 13 C 0.692 3.308 14 O -0.626 6.626 15 N -0.714 5.714 16 C 0.288 3.712 17 H -0.001 1.001 18 C -0.134 4.134 19 C -0.546 4.546 20 H 0.075 0.925 21 C 0.014 3.986 22 N -0.917 5.917 23 Si 0.975 3.025 24 H -0.264 1.264 25 H -0.287 1.287 26 H -0.271 1.271 27 C -0.143 4.143 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.421 0.579 39 H 0.404 0.596 40 H 0.009 0.991 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.266 0.734 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.808 -12.939 7.549 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.432 6.432 5 C -0.140 4.140 6 C -0.096 4.096 7 C -0.062 4.062 8 C -0.150 4.150 9 C -0.120 4.120 10 C -0.173 4.173 11 C 0.063 3.937 12 N -0.327 5.327 13 C 0.392 3.608 14 O -0.506 6.506 15 N -0.366 5.366 16 C 0.184 3.816 17 H 0.017 0.983 18 C -0.193 4.193 19 C -0.585 4.585 20 H 0.093 0.907 21 C -0.186 4.186 22 N -0.555 5.555 23 Si 0.799 3.201 24 H -0.188 1.188 25 H -0.213 1.213 26 H -0.196 1.196 27 C -0.163 4.163 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.118 0.882 38 H 0.259 0.741 39 H 0.239 0.761 40 H 0.028 0.972 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -24.452 -11.920 8.312 28.444 hybrid contribution 0.656 -0.190 -1.195 1.376 sum -23.795 -12.110 7.118 27.632 Atomic orbital electron populations 1.23512 0.75097 1.05541 1.02419 1.86516 1.24797 1.33239 1.83744 1.24300 0.93046 0.80925 0.71000 1.90680 1.68219 1.37367 1.46931 1.21456 0.85427 0.98968 1.08162 1.20293 0.89527 0.95079 1.04705 1.19612 0.95321 0.99049 0.92233 1.21258 0.93373 1.01690 0.98671 1.21194 0.95054 0.98598 0.97202 1.21210 1.00054 1.03176 0.92827 1.17748 0.91366 0.99825 0.84799 1.42513 1.23301 1.53428 1.13418 1.16269 0.80716 0.80115 0.83676 1.90867 1.72624 1.47156 1.39999 1.45454 1.24703 1.51377 1.15110 1.18261 0.79458 0.88413 0.95426 0.98296 1.21927 1.00440 0.99133 0.97818 1.21484 1.01288 1.12242 1.23449 0.90713 1.25809 0.99251 0.95351 0.98211 1.70052 1.20896 1.21710 1.42842 0.85361 0.77450 0.78207 0.79074 1.18823 1.21255 1.19608 1.20912 0.90453 1.05139 0.99825 0.92014 0.92145 0.85332 0.85696 0.85397 0.89744 0.90329 0.83228 0.84564 0.88239 0.74077 0.76097 0.97163 0.91361 0.94029 0.92519 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.37 -5.09 10.57 -51.43 -0.54 -5.63 16 3 C 0.46 7.13 7.96 71.23 0.57 7.70 16 4 O -0.54 -11.81 15.73 21.94 0.35 -11.47 16 5 C -0.10 -1.07 5.79 29.84 0.17 -0.89 16 6 C -0.06 -0.81 4.63 29.84 0.14 -0.67 16 7 C -0.06 -1.10 5.13 -19.88 -0.10 -1.20 16 8 C -0.13 -2.45 9.70 22.29 0.22 -2.24 16 9 C -0.10 -2.48 10.04 22.25 0.22 -2.26 16 10 C -0.15 -4.86 8.65 22.39 0.19 -4.67 16 11 C 0.16 4.56 6.28 38.15 0.24 4.80 16 12 N -0.68 -20.29 5.35 -317.17 -1.70 -21.99 16 13 C 0.69 28.53 8.27 179.05 1.48 30.01 16 14 O -0.63 -31.77 13.70 -3.98 -0.05 -31.82 16 15 N -0.71 -29.66 5.07 -461.40 -2.34 -32.00 16 16 C 0.29 15.02 2.56 44.25 0.11 15.13 16 17 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 18 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 19 C -0.55 -28.69 8.73 25.60 0.22 -28.46 16 20 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 21 C 0.01 0.75 5.30 84.65 0.45 1.19 16 22 N -0.92 -52.50 11.32 21.45 0.24 -52.26 16 23 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 25 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 C -0.14 -3.01 9.61 22.39 0.22 -2.80 16 28 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 29 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 30 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.18 8.04 -2.39 -0.02 1.16 16 34 H 0.08 1.18 8.04 -2.38 -0.02 1.16 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.10 3.93 6.42 -2.91 -0.02 3.91 16 38 H 0.42 9.02 8.83 -92.71 -0.82 8.20 16 39 H 0.40 13.71 8.56 -92.70 -0.79 12.92 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.07 3.82 6.07 -2.38 -0.01 3.80 16 42 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 44 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -74.97 375.81 3.39 -71.58 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -0.58 Total: 29.05 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.99 Total: 10.88 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.79 Total: -106.25 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -0.25 Total: -48.92 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -74.97 3.39 -71.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881095181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.394 kcal (2) G-P(sol) polarization free energy of solvation -74.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds