Wall clock time and date at job start Tue Mar 31 2020 13:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47183 * 2 1 4 4 C 1.53005 * 109.46822 * 240.00009 * 2 1 3 5 5 N 1.46494 * 109.46846 * 65.00224 * 4 2 1 6 6 C 1.34779 * 119.99761 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99760 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00220 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47322 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47019 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.46823 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00069 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99745 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99881 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00233 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47249 * 90.00267 * 15 13 11 17 17 H 1.48502 * 109.47397 * 209.99988 * 15 13 11 18 18 H 1.48504 * 109.47259 * 330.00375 * 15 13 11 19 19 C 1.50705 * 109.46807 * 120.00200 * 2 1 3 20 20 C 1.38256 * 119.99884 * 53.94117 * 19 2 1 21 21 C 1.38211 * 119.99637 * 179.70049 * 20 19 2 22 22 C 1.38260 * 119.99956 * 0.02562 * 21 20 19 23 23 C 1.38207 * 120.00046 * 359.96467 * 22 21 20 24 24 C 1.38212 * 119.99470 * 233.66002 * 19 2 1 25 25 N 1.48017 * 120.00465 * 0.25847 * 24 19 2 26 26 O 1.21803 * 119.99706 * 320.60630 * 25 24 19 27 27 O 1.21799 * 119.99990 * 140.60180 * 25 24 19 28 28 H 1.08996 * 109.47342 * 59.99564 * 1 2 3 29 29 H 1.09000 * 109.47684 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46883 * 300.00111 * 1 2 3 31 31 H 1.08994 * 109.46536 * 185.00359 * 4 2 1 32 32 H 1.08999 * 109.46960 * 304.99801 * 4 2 1 33 33 H 0.96998 * 120.00693 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47250 * 300.00756 * 8 6 5 35 35 H 1.09001 * 109.46695 * 60.00389 * 8 6 5 36 36 H 1.09000 * 109.47574 * 300.00556 * 9 8 6 37 37 H 1.09001 * 109.46919 * 60.00524 * 9 8 6 38 38 H 1.09002 * 109.46845 * 300.00152 * 10 9 8 39 39 H 1.08992 * 109.46909 * 60.00339 * 10 9 8 40 40 H 0.97003 * 120.00149 * 179.97438 * 14 13 11 41 41 H 1.07995 * 120.00242 * 359.71290 * 20 19 2 42 42 H 1.07995 * 120.00069 * 179.97438 * 21 20 19 43 43 H 1.08009 * 119.99670 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.99626 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4423 6 6 1.9964 -0.4130 -3.6659 7 8 2.6263 -1.4432 -3.7792 8 6 1.5972 0.3650 -4.8933 9 6 2.1072 -0.3562 -6.1425 10 6 1.7025 0.4341 -7.3886 11 6 2.2043 -0.2767 -8.6191 12 1 2.7563 -1.1999 -8.5221 13 6 1.9588 0.2517 -9.8686 14 7 2.3972 -0.3682 -10.9425 15 14 1.0035 1.8481 -10.0364 16 1 1.9468 2.9946 -10.0102 17 1 0.2607 1.8477 -11.3224 18 1 0.0434 1.9712 -8.9102 19 6 2.0323 -0.7105 1.2305 20 6 1.5982 -1.9921 1.5143 21 6 2.0636 -2.6460 2.6395 22 6 2.9629 -2.0182 3.4815 23 6 3.3969 -0.7372 3.1976 24 6 2.9313 -0.0830 2.0721 25 7 3.3965 1.2889 1.7679 26 8 3.6318 1.6110 0.6171 27 8 3.5438 2.0957 2.6684 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1262 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 1.1483 0.8591 -2.3518 34 1 0.5109 0.4425 -4.9370 35 1 2.0312 1.3638 -4.8473 36 1 3.1936 -0.4342 -6.0991 37 1 1.6728 -1.3549 -6.1883 38 1 0.6162 0.5123 -7.4322 39 1 2.1372 1.4325 -7.3426 40 1 2.2241 0.0033 -11.8217 41 1 0.8956 -2.4823 0.8568 42 1 1.7243 -3.6469 2.8615 43 1 3.3262 -2.5291 4.3610 44 1 4.0997 -0.2470 3.8551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887398519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:30 Heat of formation + Delta-G solvation = -31.291314 kcal Electronic energy + Delta-G solvation = -25975.968262 eV Core-core repulsion = 22089.121164 eV Total energy + Delta-G solvation = -3886.847097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.68324 -40.36744 -39.45784 -37.14874 -36.42301 -34.26442 -33.54737 -32.55107 -32.03231 -30.42228 -28.63784 -27.01651 -26.59806 -24.50410 -23.41472 -22.81408 -21.03554 -20.56619 -19.83878 -19.45639 -19.01858 -18.06930 -17.17148 -16.77491 -16.39295 -16.15558 -15.77349 -15.56325 -15.24296 -14.69593 -14.46018 -14.24867 -13.95275 -13.58754 -13.31919 -13.08513 -12.99303 -12.65820 -12.59921 -12.19180 -11.97942 -11.90700 -11.84669 -11.67129 -11.52221 -11.47557 -10.94369 -10.88753 -10.75027 -10.16369 -9.98150 -9.83690 -9.78028 -9.66535 -9.39312 -9.09873 -9.07103 -8.48015 -5.97821 -3.95379 -0.47271 0.31583 0.69951 0.98154 2.64647 2.89184 3.14698 3.34415 3.41265 3.44204 3.73006 3.76578 4.07049 4.29344 4.31091 4.39126 4.49515 4.49968 4.51521 4.74527 5.02057 5.05882 5.10420 5.19665 5.28650 5.32673 5.35574 5.44978 5.50686 5.58933 5.63936 5.65117 5.68901 5.73525 6.03904 6.14840 6.39489 6.60396 6.73162 6.96365 7.23002 7.41362 7.49671 7.54470 7.85931 8.41130 8.62440 9.09049 9.64331 11.15873 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.002147 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.690679 B =13036.913367 C =13498.576662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.107 0.893 4 C 0.138 3.862 5 N -0.737 5.737 6 C 0.514 3.486 7 O -0.535 6.535 8 C -0.141 4.141 9 C -0.087 4.087 10 C -0.015 4.015 11 C -0.518 4.518 12 H 0.072 0.928 13 C 0.063 3.937 14 N -0.905 5.905 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.012 4.012 20 C -0.109 4.109 21 C -0.069 4.069 22 C -0.117 4.117 23 C -0.060 4.060 24 C -0.033 4.033 25 N 0.022 4.978 26 O -0.142 6.142 27 O -0.154 6.154 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 -1.203 35.214 35.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.125 0.875 4 C 0.014 3.986 5 N -0.391 5.391 6 C 0.302 3.698 7 O -0.411 6.411 8 C -0.181 4.181 9 C -0.125 4.125 10 C -0.052 4.052 11 C -0.556 4.556 12 H 0.090 0.910 13 C -0.137 4.137 14 N -0.544 5.544 15 Si 0.709 3.291 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.014 4.014 20 C -0.127 4.127 21 C -0.087 4.087 22 C -0.135 4.135 23 C -0.079 4.079 24 C -0.115 4.115 25 N 0.543 4.457 26 O -0.360 6.360 27 O -0.371 6.371 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.234 0.766 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.193 -2.628 35.072 35.420 hybrid contribution -0.517 1.612 -0.103 1.696 sum -4.711 -1.015 34.970 35.300 Atomic orbital electron populations 1.21924 0.92622 1.03043 1.02831 1.20854 0.97486 1.01602 0.91120 0.87499 1.21126 1.00457 0.94646 0.82353 1.46044 1.59359 1.28106 1.05582 1.21167 0.78452 0.85757 0.84412 1.90693 1.39154 1.24589 1.86644 1.21870 1.02728 1.00366 0.93156 1.21263 1.00996 0.98950 0.91319 1.19611 0.96295 0.95604 0.93713 1.21168 1.35320 1.09851 0.89242 0.90953 1.25060 0.95522 0.97263 0.95881 1.69927 1.46784 1.39742 0.97970 0.86753 0.80661 0.84263 0.77421 1.20328 1.21495 1.19047 1.19569 0.93180 0.94274 0.94387 1.21184 1.00689 0.92730 0.98096 1.21628 0.93923 1.00337 0.92819 1.21227 0.97845 0.93646 1.00789 1.20974 0.98435 0.95068 0.93456 1.20918 1.05367 0.84319 1.00909 1.43653 0.98465 1.02895 1.00646 1.94551 1.51973 1.83824 1.05643 1.94559 1.55615 1.46695 1.40278 0.90950 0.91635 0.92250 0.91161 0.91349 0.76579 0.89388 0.89212 0.92080 0.92135 0.96688 0.97041 0.92826 0.83354 0.83775 0.83508 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.81 37.16 0.33 -0.55 16 2 C -0.09 -0.72 2.17 -91.77 -0.20 -0.92 16 3 H 0.11 0.98 5.15 -51.93 -0.27 0.72 16 4 C 0.14 1.40 4.88 -4.04 -0.02 1.38 16 5 N -0.74 -8.20 5.28 -60.30 -0.32 -8.52 16 6 C 0.51 7.94 7.83 -10.98 -0.09 7.86 16 7 O -0.54 -10.54 15.98 5.56 0.09 -10.45 16 8 C -0.14 -2.19 5.70 -27.88 -0.16 -2.35 16 9 C -0.09 -1.83 4.44 -26.73 -0.12 -1.95 16 10 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 11 C -0.52 -15.26 9.66 -34.44 -0.33 -15.60 16 12 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 13 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 14 N -0.90 -28.59 13.96 55.43 0.77 -27.82 16 15 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 19 C -0.01 -0.09 4.78 -104.62 -0.50 -0.59 16 20 C -0.11 -0.56 8.85 -39.58 -0.35 -0.91 16 21 C -0.07 -0.25 10.05 -39.58 -0.40 -0.65 16 22 C -0.12 -0.44 10.05 -39.58 -0.40 -0.83 16 23 C -0.06 -0.36 9.68 -39.59 -0.38 -0.75 16 24 C -0.03 -0.28 6.45 -79.95 -0.52 -0.80 16 25 N 0.02 0.24 4.15 33.96 0.14 0.38 16 26 O -0.14 -1.76 16.29 -29.46 -0.48 -2.24 16 27 O -0.15 -1.79 18.99 -29.46 -0.56 -2.35 16 28 H 0.07 0.41 7.18 -51.93 -0.37 0.04 16 29 H 0.06 0.34 7.07 -51.93 -0.37 -0.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.68 7.98 -51.93 -0.41 0.27 16 33 H 0.40 3.36 7.65 -40.82 -0.31 3.05 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 37 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 38 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.15 0.55 7.18 -52.49 -0.38 0.17 16 42 H 0.14 0.14 8.06 -52.49 -0.42 -0.29 16 43 H 0.15 0.15 8.06 -52.48 -0.42 -0.27 16 44 H 0.15 0.70 8.04 -52.48 -0.42 0.28 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -36.56 371.93 -9.03 -45.59 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.26 Total: -2.16 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -3.34 Total: -15.33 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.60 Total: -35.96 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.95 Total: -15.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.56 -9.03 -45.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887398519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.298 kcal (2) G-P(sol) polarization free energy of solvation -36.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds