Wall clock time and date at job start Tue Mar 31 2020 13:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47183 * 2 1 4 4 C 1.53005 * 109.46822 * 240.00009 * 2 1 3 5 5 N 1.46494 * 109.46846 * 65.00224 * 4 2 1 6 6 C 1.34779 * 119.99761 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99760 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00220 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47322 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47019 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.46823 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00069 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99745 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99881 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00233 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47249 * 90.00267 * 15 13 11 17 17 H 1.48502 * 109.47397 * 209.99988 * 15 13 11 18 18 H 1.48504 * 109.47259 * 330.00375 * 15 13 11 19 19 C 1.50705 * 109.46807 * 120.00200 * 2 1 3 20 20 C 1.38256 * 119.99884 * 53.94117 * 19 2 1 21 21 C 1.38211 * 119.99637 * 179.70049 * 20 19 2 22 22 C 1.38260 * 119.99956 * 0.02562 * 21 20 19 23 23 C 1.38207 * 120.00046 * 359.96467 * 22 21 20 24 24 C 1.38212 * 119.99470 * 233.66002 * 19 2 1 25 25 N 1.48017 * 120.00465 * 0.25847 * 24 19 2 26 26 O 1.21803 * 119.99706 * 320.60630 * 25 24 19 27 27 O 1.21799 * 119.99990 * 140.60180 * 25 24 19 28 28 H 1.08996 * 109.47342 * 59.99564 * 1 2 3 29 29 H 1.09000 * 109.47684 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46883 * 300.00111 * 1 2 3 31 31 H 1.08994 * 109.46536 * 185.00359 * 4 2 1 32 32 H 1.08999 * 109.46960 * 304.99801 * 4 2 1 33 33 H 0.96998 * 120.00693 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47250 * 300.00756 * 8 6 5 35 35 H 1.09001 * 109.46695 * 60.00389 * 8 6 5 36 36 H 1.09000 * 109.47574 * 300.00556 * 9 8 6 37 37 H 1.09001 * 109.46919 * 60.00524 * 9 8 6 38 38 H 1.09002 * 109.46845 * 300.00152 * 10 9 8 39 39 H 1.08992 * 109.46909 * 60.00339 * 10 9 8 40 40 H 0.97003 * 120.00149 * 179.97438 * 14 13 11 41 41 H 1.07995 * 120.00242 * 359.71290 * 20 19 2 42 42 H 1.07995 * 120.00069 * 179.97438 * 21 20 19 43 43 H 1.08009 * 119.99670 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.99626 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4423 6 6 1.9964 -0.4130 -3.6659 7 8 2.6263 -1.4432 -3.7792 8 6 1.5972 0.3650 -4.8933 9 6 2.1072 -0.3562 -6.1425 10 6 1.7025 0.4341 -7.3886 11 6 2.2043 -0.2767 -8.6191 12 1 2.7563 -1.1999 -8.5221 13 6 1.9588 0.2517 -9.8686 14 7 2.3972 -0.3682 -10.9425 15 14 1.0035 1.8481 -10.0364 16 1 1.9468 2.9946 -10.0102 17 1 0.2607 1.8477 -11.3224 18 1 0.0434 1.9712 -8.9102 19 6 2.0323 -0.7105 1.2305 20 6 1.5982 -1.9921 1.5143 21 6 2.0636 -2.6460 2.6395 22 6 2.9629 -2.0182 3.4815 23 6 3.3969 -0.7372 3.1976 24 6 2.9313 -0.0830 2.0721 25 7 3.3965 1.2889 1.7679 26 8 3.6318 1.6110 0.6171 27 8 3.5438 2.0957 2.6684 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1262 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 1.1483 0.8591 -2.3518 34 1 0.5109 0.4425 -4.9370 35 1 2.0312 1.3638 -4.8473 36 1 3.1936 -0.4342 -6.0991 37 1 1.6728 -1.3549 -6.1883 38 1 0.6162 0.5123 -7.4322 39 1 2.1372 1.4325 -7.3426 40 1 2.2241 0.0033 -11.8217 41 1 0.8956 -2.4823 0.8568 42 1 1.7243 -3.6469 2.8615 43 1 3.3262 -2.5291 4.3610 44 1 4.0997 -0.2470 3.8551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887398519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:29 Heat of formation + Delta-G solvation = -54.741810 kcal Electronic energy + Delta-G solvation = -25976.985152 eV Core-core repulsion = 22089.121164 eV Total energy + Delta-G solvation = -3887.863987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.41781 -41.05900 -40.45933 -37.93743 -37.24864 -36.09505 -34.45519 -34.06096 -33.02642 -31.05192 -30.18747 -27.76652 -27.49008 -25.53897 -24.58223 -23.45485 -22.13403 -21.66765 -21.23724 -20.10526 -19.79446 -18.94808 -18.77682 -18.00253 -17.28635 -16.91569 -16.83455 -16.40607 -16.22714 -15.71578 -15.55420 -15.05482 -14.94856 -14.71445 -14.67602 -14.22413 -13.84959 -13.74610 -13.45393 -13.25935 -13.09853 -12.90522 -12.68594 -12.66055 -12.51133 -12.43293 -12.30393 -12.20364 -11.77527 -11.71746 -11.58684 -11.47829 -11.31181 -10.84356 -10.73819 -10.57945 -10.19053 -10.11712 -8.26580 -6.31955 -1.14492 -0.07206 0.07722 0.33655 1.39665 1.42860 1.54983 1.67416 2.13210 2.31995 2.40167 3.08485 3.20036 3.26689 3.65078 3.77008 3.90141 3.93509 3.96675 3.99110 4.10347 4.19038 4.23998 4.28094 4.50929 4.60189 4.69499 4.75361 4.79560 4.83954 4.94396 4.94738 4.99036 5.02757 5.06378 5.11316 5.16221 5.23077 5.40441 5.53926 5.58839 5.62304 5.69558 6.32145 6.36428 6.54568 6.76713 7.27844 7.32330 8.91022 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.002147 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.690679 B =13036.913367 C =13498.576662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.091 0.909 4 C 0.141 3.859 5 N -0.716 5.716 6 C 0.515 3.485 7 O -0.587 6.587 8 C -0.132 4.132 9 C -0.081 4.081 10 C -0.010 4.010 11 C -0.539 4.539 12 H 0.019 0.981 13 C -0.005 4.005 14 N -0.957 5.957 15 Si 0.962 3.038 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.235 1.235 19 C -0.028 4.028 20 C -0.112 4.112 21 C -0.057 4.057 22 C -0.107 4.107 23 C -0.069 4.069 24 C -0.058 4.058 25 N 0.026 4.974 26 O -0.180 6.180 27 O -0.168 6.168 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.416 0.584 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.165 0.835 42 H 0.180 0.820 43 H 0.181 0.819 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 -0.459 37.876 38.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 H 0.109 0.891 4 C 0.017 3.983 5 N -0.369 5.369 6 C 0.303 3.697 7 O -0.467 6.467 8 C -0.171 4.171 9 C -0.119 4.119 10 C -0.047 4.047 11 C -0.577 4.577 12 H 0.038 0.962 13 C -0.200 4.200 14 N -0.598 5.598 15 Si 0.784 3.216 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.158 1.158 19 C -0.030 4.030 20 C -0.131 4.131 21 C -0.075 4.075 22 C -0.125 4.125 23 C -0.089 4.089 24 C -0.140 4.140 25 N 0.542 4.458 26 O -0.392 6.392 27 O -0.385 6.385 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.254 0.746 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.183 0.817 42 H 0.197 0.803 43 H 0.198 0.802 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.712 -1.840 37.756 38.392 hybrid contribution 0.329 1.182 -0.833 1.483 sum -6.382 -0.658 36.923 37.476 Atomic orbital electron populations 1.21931 0.90897 1.04043 1.03255 1.20689 0.98757 1.00385 0.90262 0.89106 1.21140 0.99096 0.95224 0.82820 1.45829 1.58025 1.28371 1.04687 1.21142 0.77938 0.85036 0.85594 1.90683 1.41729 1.26880 1.87417 1.21729 1.04646 1.00433 0.90302 1.21041 0.99363 0.98313 0.93184 1.19556 0.96994 0.95874 0.92306 1.21561 1.35193 1.08751 0.92172 0.96225 1.26206 0.96720 1.02032 0.95088 1.70110 1.48592 1.42250 0.98830 0.85493 0.79461 0.78222 0.78432 1.19083 1.21190 1.15762 1.19651 0.93842 0.95304 0.94218 1.21486 1.00843 0.91728 0.99019 1.22101 0.92461 1.01455 0.91435 1.21674 0.96859 0.92417 1.01549 1.21279 0.98707 0.96104 0.92764 1.21178 1.07076 0.82994 1.02800 1.44064 0.97696 1.03911 1.00090 1.94534 1.53588 1.84756 1.06293 1.94520 1.55929 1.47909 1.40187 0.90519 0.90328 0.91843 0.93673 0.90778 0.74632 0.86152 0.86692 0.94737 0.94295 0.94957 0.95394 0.92535 0.81733 0.80280 0.80166 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.81 71.98 0.63 -0.79 16 2 C -0.08 -1.22 2.17 -11.54 -0.03 -1.25 16 3 H 0.09 1.69 5.15 -2.39 -0.01 1.68 16 4 C 0.14 2.80 4.88 86.38 0.42 3.22 16 5 N -0.72 -15.02 5.28 -463.07 -2.45 -17.47 16 6 C 0.51 15.52 7.83 87.66 0.69 16.20 16 7 O -0.59 -23.68 15.98 -3.03 -0.05 -23.73 16 8 C -0.13 -3.80 5.70 29.85 0.17 -3.63 16 9 C -0.08 -3.41 4.44 30.59 0.14 -3.27 16 10 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 11 C -0.54 -32.71 9.66 25.60 0.25 -32.47 16 12 H 0.02 1.34 7.99 -2.91 -0.02 1.31 16 13 C 0.00 -0.28 5.47 84.65 0.46 0.18 16 14 N -0.96 -62.29 13.96 21.45 0.30 -61.99 16 15 Si 0.96 44.40 27.47 68.60 1.88 46.28 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 18 H -0.23 -9.62 6.54 99.48 0.65 -8.96 16 19 C -0.03 -0.39 4.78 -19.86 -0.09 -0.48 16 20 C -0.11 -0.87 8.85 22.27 0.20 -0.67 16 21 C -0.06 -0.19 10.05 22.27 0.22 0.03 16 22 C -0.11 -0.44 10.05 22.27 0.22 -0.22 16 23 C -0.07 -0.74 9.68 22.27 0.22 -0.52 16 24 C -0.06 -0.97 6.45 36.37 0.23 -0.74 16 25 N 0.03 0.59 4.15 -46.47 -0.19 0.40 16 26 O -0.18 -4.74 16.29 18.88 0.31 -4.43 16 27 O -0.17 -4.05 18.99 18.89 0.36 -3.69 16 28 H 0.08 0.68 7.18 -2.39 -0.02 0.67 16 29 H 0.08 0.58 7.07 -2.39 -0.02 0.56 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.40 7.98 -2.39 -0.02 1.39 16 33 H 0.42 6.06 7.65 -92.71 -0.71 5.35 16 34 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.03 1.59 8.10 -2.39 -0.02 1.57 16 37 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 39 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 40 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 41 H 0.17 0.69 7.18 -2.91 -0.02 0.66 16 42 H 0.18 -0.62 8.06 -2.91 -0.02 -0.64 16 43 H 0.18 -0.47 8.06 -2.91 -0.02 -0.49 16 44 H 0.15 1.32 8.04 -2.91 -0.02 1.30 16 Total: -1.00 -85.75 371.93 4.27 -81.48 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.25 Total: 7.90 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 3.85 Total: -24.75 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.34 Total: -79.06 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: 0.62 Total: -31.85 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.28 kcal Total: -85.75 4.27 -81.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887398519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.737 kcal (2) G-P(sol) polarization free energy of solvation -85.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds