Wall clock time and date at job start Tue Mar 31 2020 12:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.75581 * 2 1 4 4 C 1.54386 * 110.85022 * 123.47470 * 2 1 3 5 5 O 1.43240 * 107.59040 * 139.54769 * 4 2 1 6 6 C 1.43637 * 109.97122 * 1.70953 * 5 4 2 7 7 H 1.08999 * 110.31134 * 94.58629 * 6 5 4 8 8 C 1.50700 * 110.31129 * 216.65750 * 6 5 4 9 9 O 1.21290 * 119.99936 * 3.54998 * 8 6 5 10 10 N 1.34782 * 120.00282 * 183.54589 * 8 6 5 11 11 C 1.39572 * 119.99740 * 179.97438 * 10 8 6 12 12 N 1.32277 * 119.73117 * 359.97438 * 11 10 8 13 13 C 1.31956 * 121.68759 * 180.02562 * 12 11 10 14 14 C 1.38080 * 120.96115 * 0.02562 * 13 12 11 15 15 C 1.38786 * 119.35190 * 359.68069 * 14 13 12 16 16 C 1.38804 * 118.44539 * 0.58415 * 15 14 13 17 17 O 1.35974 * 120.49721 * 179.70977 * 16 15 14 18 18 C 1.42898 * 116.99914 * 359.72463 * 17 16 15 19 19 C 1.52996 * 109.47180 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.47159 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72211 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48504 * 109.47196 * 60.00645 * 24 22 20 26 26 H 1.48504 * 109.46887 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47679 * 300.00280 * 24 22 20 28 28 C 1.54946 * 105.14071 * 335.57648 * 6 5 4 29 29 H 1.09001 * 109.47001 * 297.97862 * 1 2 3 30 30 H 1.09000 * 109.47341 * 57.97910 * 1 2 3 31 31 H 1.09005 * 109.47051 * 177.98373 * 1 2 3 32 32 H 1.09003 * 109.82638 * 20.03147 * 4 2 1 33 33 H 1.09007 * 109.83033 * 259.06174 * 4 2 1 34 34 H 0.96999 * 119.99478 * 0.02562 * 10 8 6 35 35 H 1.08005 * 119.51840 * 179.97438 * 13 12 11 36 36 H 1.07994 * 120.32586 * 179.97438 * 14 13 12 37 37 H 1.07992 * 120.77815 * 180.31873 * 15 14 13 38 38 H 1.09004 * 109.47053 * 59.99685 * 18 17 16 39 39 H 1.09000 * 109.47521 * 300.00027 * 18 17 16 40 40 H 1.09004 * 109.47066 * 60.00083 * 19 18 17 41 41 H 1.08994 * 109.47405 * 299.99913 * 19 18 17 42 42 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 43 43 H 1.08998 * 111.13074 * 154.36517 * 28 6 5 44 44 H 1.09005 * 111.12239 * 278.52871 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9162 1.0193 0.0000 4 6 2.0794 -0.7958 1.2034 5 8 3.2045 -1.5539 0.7438 6 6 3.4464 -1.2796 -0.6453 7 1 4.1947 -0.4942 -0.7511 8 6 3.8981 -2.5302 -1.3545 9 8 3.9460 -3.5836 -0.7551 10 7 4.2487 -2.4783 -2.6548 11 6 4.6675 -3.6365 -3.3115 12 7 4.7188 -4.7822 -2.6523 13 6 5.1093 -5.9001 -3.2346 14 6 5.4824 -5.9158 -4.5639 15 6 5.4385 -4.7380 -5.2968 16 6 5.0293 -3.5761 -4.6571 17 8 4.9764 -2.3978 -5.3337 18 6 5.3635 -2.4216 -6.7090 19 6 5.2390 -1.0151 -7.2983 20 6 5.6478 -1.0401 -8.7486 21 1 5.9643 -1.9665 -9.2046 22 6 5.6118 0.1187 -9.4950 23 7 5.2260 1.2468 -8.9398 24 14 6.1112 0.0862 -11.2947 25 1 5.2258 -0.8465 -12.0373 26 1 5.9858 1.4504 -11.8678 27 1 7.5194 -0.3709 -11.4096 28 6 2.0827 -0.8052 -1.2076 29 1 -0.3633 0.4821 0.9076 30 1 -0.3634 0.5449 -0.8713 31 1 -0.3633 -1.0271 -0.0362 32 1 1.3107 -1.4685 1.5839 33 1 2.3929 -0.1084 1.9893 34 1 4.2107 -1.6358 -3.1341 35 1 5.1383 -6.8159 -2.6629 36 1 5.8007 -6.8364 -5.0301 37 1 5.7203 -4.7249 -6.3392 38 1 4.7139 -3.1038 -7.2576 39 1 6.3966 -2.7597 -6.7900 40 1 5.8884 -0.3327 -6.7498 41 1 4.2059 -0.6774 -7.2174 42 1 5.2010 2.0620 -9.4648 43 1 2.2185 -0.1638 -2.0783 44 1 1.4385 -1.6525 -1.4426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888864651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:00 Heat of formation + Delta-G solvation = -80.827024 kcal Electronic energy + Delta-G solvation = -26465.404493 eV Core-core repulsion = 22576.409366 eV Total energy + Delta-G solvation = -3888.995127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.00848 -40.11495 -38.53971 -37.71194 -34.85777 -33.83771 -33.49262 -31.77846 -31.06677 -30.23862 -28.87724 -26.67014 -25.45987 -24.58261 -23.16921 -22.62224 -21.18681 -20.84815 -20.10111 -18.40756 -17.69801 -17.56745 -16.76588 -16.19910 -16.00409 -15.81945 -15.43535 -15.09374 -14.97436 -14.61824 -14.56074 -14.09538 -13.96575 -13.68702 -13.36376 -13.25486 -12.86517 -12.66757 -12.41847 -12.04621 -12.02557 -11.93565 -11.55774 -11.31844 -11.10497 -11.09447 -10.99472 -10.71523 -10.70949 -10.24202 -10.06680 -9.84882 -9.74327 -9.43997 -9.23121 -8.96964 -8.53952 -7.68136 -6.19991 -4.24953 1.19231 1.43863 2.58634 2.68823 3.22416 3.27171 3.28136 3.50842 3.66213 3.99254 4.01081 4.28941 4.32207 4.43324 4.63596 4.77334 4.79733 4.92465 4.94189 5.06863 5.10749 5.16944 5.26701 5.30035 5.35573 5.44748 5.45699 5.55270 5.61180 5.72245 5.84139 5.87939 5.91283 6.04433 6.17072 6.32925 6.51653 6.55950 6.68607 7.23371 7.32236 7.50168 7.61828 7.83105 8.05727 8.12260 8.33820 8.79946 9.40031 10.91358 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.003075 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.443998 B = 9102.418035 C =11269.552724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 H 0.091 0.909 4 C 0.052 3.948 5 O -0.353 6.353 6 C 0.067 3.933 7 H 0.101 0.899 8 C 0.503 3.497 9 O -0.460 6.460 10 N -0.649 5.649 11 C 0.329 3.671 12 N -0.445 5.445 13 C 0.076 3.924 14 C -0.159 4.159 15 C -0.148 4.148 16 C 0.068 3.932 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 C -0.145 4.145 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.424 0.576 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.265 0.735 43 H 0.097 0.903 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 -5.085 15.145 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 H 0.109 0.891 4 C -0.024 4.024 5 O -0.271 6.271 6 C 0.006 3.994 7 H 0.119 0.881 8 C 0.287 3.713 9 O -0.327 6.327 10 N -0.299 5.299 11 C 0.097 3.903 12 N -0.160 5.160 13 C -0.081 4.081 14 C -0.181 4.181 15 C -0.174 4.174 16 C 0.016 3.984 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.010 4.010 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.183 4.183 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.262 0.738 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.272 -5.553 16.704 18.687 hybrid contribution 0.517 0.500 -2.528 2.628 sum -5.755 -5.054 14.176 16.113 Atomic orbital electron populations 1.21734 0.93342 1.02517 1.02418 1.22728 0.97434 1.00124 0.94126 0.89073 1.23328 0.88506 0.94305 0.96296 1.88522 1.49177 1.67399 1.22035 1.22787 0.98660 0.94483 0.83447 0.88125 1.20599 0.78400 0.90874 0.81452 1.90809 1.47224 1.30338 1.64372 1.43362 1.65133 1.10232 1.11180 1.17777 0.99061 0.87529 0.85972 1.67627 1.14889 0.97035 1.36407 1.22419 0.97647 0.95481 0.92561 1.21898 1.02183 0.98538 0.95444 1.21614 1.02547 0.91785 1.01488 1.19580 0.99809 0.87792 0.91185 1.86093 1.82236 1.27255 1.27274 1.23400 0.98212 1.03502 0.75695 1.19116 0.98755 0.88065 0.95041 1.20913 1.46191 0.95110 0.94548 0.92394 1.24974 0.94920 0.95329 0.98822 1.69952 1.46587 0.99386 1.36747 0.86544 0.79204 0.77273 0.84349 1.20065 1.21074 1.20057 1.23384 0.94709 1.01051 0.99112 0.92085 0.91792 0.92145 0.90906 0.90949 0.73848 0.82586 0.84749 0.83703 0.92943 0.92918 0.95352 0.95364 0.92580 0.88410 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.14 37.15 0.34 -0.58 16 2 C -0.13 -0.94 3.60 -88.67 -0.32 -1.26 16 3 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.05 0.48 7.40 37.88 0.28 0.76 16 5 O -0.35 -4.66 10.61 -54.55 -0.58 -5.24 16 6 C 0.07 0.78 3.86 -26.86 -0.10 0.67 16 7 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 8 C 0.50 7.61 7.14 -10.98 -0.08 7.54 16 9 O -0.46 -8.82 14.80 -13.77 -0.20 -9.02 16 10 N -0.65 -9.53 5.39 -11.29 -0.06 -9.59 16 11 C 0.33 5.50 7.45 -154.44 -1.15 4.35 16 12 N -0.44 -7.61 7.88 -12.22 -0.10 -7.71 16 13 C 0.08 1.04 11.17 -17.56 -0.20 0.85 16 14 C -0.16 -1.99 10.10 -39.44 -0.40 -2.39 16 15 C -0.15 -2.14 9.14 -39.17 -0.36 -2.49 16 16 C 0.07 1.12 6.72 -38.91 -0.26 0.86 16 17 O -0.32 -5.70 9.38 -19.66 -0.18 -5.88 16 18 C 0.07 1.27 4.70 37.16 0.17 1.45 16 19 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 20 C -0.53 -13.97 9.11 -34.44 -0.31 -14.28 16 21 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 24 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.14 -1.31 6.02 -24.48 -0.15 -1.46 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.07 0.64 7.81 -51.93 -0.41 0.23 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.42 5.36 8.05 -40.82 -0.33 5.03 16 35 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.15 1.93 6.44 -52.49 -0.34 1.59 16 38 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 39 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.87 7.93 -51.93 -0.41 0.45 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -33.32 369.61 -9.09 -42.42 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.47 Total: 2.39 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.78 Total: -3.90 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.58 Total: -41.78 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.97 Total: -20.14 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.32 -9.09 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888864651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.412 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds