Wall clock time and date at job start Tue Mar 31 2020 12:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.75581 * 2 1 4 4 C 1.54386 * 110.85022 * 123.47470 * 2 1 3 5 5 O 1.43240 * 107.59040 * 139.54769 * 4 2 1 6 6 C 1.43637 * 109.97122 * 1.70953 * 5 4 2 7 7 H 1.08999 * 110.31134 * 94.58629 * 6 5 4 8 8 C 1.50700 * 110.31129 * 216.65750 * 6 5 4 9 9 O 1.21290 * 119.99936 * 3.54998 * 8 6 5 10 10 N 1.34782 * 120.00282 * 183.54589 * 8 6 5 11 11 C 1.39572 * 119.99740 * 179.97438 * 10 8 6 12 12 N 1.32277 * 119.73117 * 359.97438 * 11 10 8 13 13 C 1.31956 * 121.68759 * 180.02562 * 12 11 10 14 14 C 1.38080 * 120.96115 * 0.02562 * 13 12 11 15 15 C 1.38786 * 119.35190 * 359.68069 * 14 13 12 16 16 C 1.38804 * 118.44539 * 0.58415 * 15 14 13 17 17 O 1.35974 * 120.49721 * 179.70977 * 16 15 14 18 18 C 1.42898 * 116.99914 * 359.72463 * 17 16 15 19 19 C 1.52996 * 109.47180 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.47159 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72211 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48504 * 109.47196 * 60.00645 * 24 22 20 26 26 H 1.48504 * 109.46887 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47679 * 300.00280 * 24 22 20 28 28 C 1.54946 * 105.14071 * 335.57648 * 6 5 4 29 29 H 1.09001 * 109.47001 * 297.97862 * 1 2 3 30 30 H 1.09000 * 109.47341 * 57.97910 * 1 2 3 31 31 H 1.09005 * 109.47051 * 177.98373 * 1 2 3 32 32 H 1.09003 * 109.82638 * 20.03147 * 4 2 1 33 33 H 1.09007 * 109.83033 * 259.06174 * 4 2 1 34 34 H 0.96999 * 119.99478 * 0.02562 * 10 8 6 35 35 H 1.08005 * 119.51840 * 179.97438 * 13 12 11 36 36 H 1.07994 * 120.32586 * 179.97438 * 14 13 12 37 37 H 1.07992 * 120.77815 * 180.31873 * 15 14 13 38 38 H 1.09004 * 109.47053 * 59.99685 * 18 17 16 39 39 H 1.09000 * 109.47521 * 300.00027 * 18 17 16 40 40 H 1.09004 * 109.47066 * 60.00083 * 19 18 17 41 41 H 1.08994 * 109.47405 * 299.99913 * 19 18 17 42 42 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 43 43 H 1.08998 * 111.13074 * 154.36517 * 28 6 5 44 44 H 1.09005 * 111.12239 * 278.52871 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9162 1.0193 0.0000 4 6 2.0794 -0.7958 1.2034 5 8 3.2045 -1.5539 0.7438 6 6 3.4464 -1.2796 -0.6453 7 1 4.1947 -0.4942 -0.7511 8 6 3.8981 -2.5302 -1.3545 9 8 3.9460 -3.5836 -0.7551 10 7 4.2487 -2.4783 -2.6548 11 6 4.6675 -3.6365 -3.3115 12 7 4.7188 -4.7822 -2.6523 13 6 5.1093 -5.9001 -3.2346 14 6 5.4824 -5.9158 -4.5639 15 6 5.4385 -4.7380 -5.2968 16 6 5.0293 -3.5761 -4.6571 17 8 4.9764 -2.3978 -5.3337 18 6 5.3635 -2.4216 -6.7090 19 6 5.2390 -1.0151 -7.2983 20 6 5.6478 -1.0401 -8.7486 21 1 5.9643 -1.9665 -9.2046 22 6 5.6118 0.1187 -9.4950 23 7 5.2260 1.2468 -8.9398 24 14 6.1112 0.0862 -11.2947 25 1 5.2258 -0.8465 -12.0373 26 1 5.9858 1.4504 -11.8678 27 1 7.5194 -0.3709 -11.4096 28 6 2.0827 -0.8052 -1.2076 29 1 -0.3633 0.4821 0.9076 30 1 -0.3634 0.5449 -0.8713 31 1 -0.3633 -1.0271 -0.0362 32 1 1.3107 -1.4685 1.5839 33 1 2.3929 -0.1084 1.9893 34 1 4.2107 -1.6358 -3.1341 35 1 5.1383 -6.8159 -2.6629 36 1 5.8007 -6.8364 -5.0301 37 1 5.7203 -4.7249 -6.3392 38 1 4.7139 -3.1038 -7.2576 39 1 6.3966 -2.7597 -6.7900 40 1 5.8884 -0.3327 -6.7498 41 1 4.2059 -0.6774 -7.2174 42 1 5.2010 2.0620 -9.4648 43 1 2.2185 -0.1638 -2.0783 44 1 1.4385 -1.6525 -1.4426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888864651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:59 Heat of formation + Delta-G solvation = -101.299171 kcal Electronic energy + Delta-G solvation = -26466.292232 eV Core-core repulsion = 22576.409366 eV Total energy + Delta-G solvation = -3889.882866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15730 -41.12303 -39.67486 -38.97992 -36.05892 -35.43863 -34.57617 -32.96756 -32.47916 -31.53686 -30.04335 -27.30899 -27.16272 -25.68417 -24.49619 -23.72130 -22.66124 -21.74864 -21.17165 -19.64763 -18.92668 -18.69518 -18.03767 -17.68874 -17.17958 -17.14297 -16.51265 -16.41246 -16.12628 -16.06615 -15.57938 -15.19770 -15.10197 -14.57770 -14.41457 -14.33326 -14.14381 -13.94057 -13.62042 -13.36040 -13.30481 -12.86924 -12.80605 -12.71999 -12.44736 -12.21059 -12.02691 -11.89480 -11.72938 -11.70639 -11.62714 -11.42822 -11.26277 -10.69772 -10.58788 -10.42907 -10.12986 -8.89176 -8.24389 -6.36597 0.05546 0.27352 1.43655 1.45869 1.50037 1.53637 1.59640 2.10209 2.45092 2.79572 2.86553 3.10982 3.18208 3.42212 3.61854 3.76596 3.84634 3.90382 4.03142 4.04867 4.13187 4.23030 4.30714 4.34140 4.45347 4.51092 4.66563 4.72156 4.75889 4.77397 4.88107 4.94615 5.01269 5.11554 5.18098 5.22113 5.31980 5.36168 5.51523 5.52511 5.73498 5.82296 6.09352 6.15134 6.32627 6.77897 6.89225 7.21077 7.33271 8.87849 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.003075 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.443998 B = 9102.418035 C =11269.552724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 H 0.110 0.890 4 C 0.045 3.955 5 O -0.386 6.386 6 C 0.069 3.931 7 H 0.124 0.876 8 C 0.501 3.499 9 O -0.508 6.508 10 N -0.645 5.645 11 C 0.309 3.691 12 N -0.478 5.478 13 C 0.072 3.928 14 C -0.142 4.142 15 C -0.148 4.148 16 C 0.046 3.954 17 O -0.327 6.327 18 C 0.083 3.917 19 C 0.031 3.969 20 C -0.546 4.546 21 H 0.070 0.930 22 C 0.006 3.994 23 N -0.928 5.928 24 Si 0.968 3.032 25 H -0.265 1.265 26 H -0.285 1.285 27 H -0.266 1.266 28 C -0.142 4.142 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.430 0.570 35 H 0.185 0.815 36 H 0.177 0.823 37 H 0.159 0.841 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.266 0.734 43 H 0.114 0.886 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.810 -5.925 14.189 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 H 0.128 0.872 4 C -0.031 4.031 5 O -0.305 6.305 6 C 0.009 3.991 7 H 0.141 0.859 8 C 0.287 3.713 9 O -0.379 6.379 10 N -0.295 5.295 11 C 0.077 3.923 12 N -0.193 5.193 13 C -0.085 4.085 14 C -0.163 4.163 15 C -0.175 4.175 16 C -0.005 4.005 17 O -0.240 6.240 18 C 0.009 3.991 19 C -0.006 4.006 20 C -0.584 4.584 21 H 0.088 0.912 22 C -0.193 4.193 23 N -0.567 5.567 24 Si 0.793 3.207 25 H -0.190 1.190 26 H -0.210 1.210 27 H -0.191 1.191 28 C -0.180 4.180 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.269 0.731 35 H 0.202 0.798 36 H 0.194 0.806 37 H 0.177 0.823 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.030 -6.387 15.745 18.029 hybrid contribution 0.439 0.651 -2.147 2.286 sum -5.590 -5.736 13.598 15.781 Atomic orbital electron populations 1.21733 0.92451 1.02262 1.03404 1.22736 0.98082 1.00399 0.92237 0.87223 1.23550 0.87665 0.94542 0.97359 1.88486 1.50674 1.68651 1.22710 1.22912 1.00439 0.92890 0.82900 0.85896 1.21319 0.77172 0.91528 0.81288 1.90766 1.49515 1.32320 1.65329 1.43412 1.64618 1.10247 1.11212 1.17990 0.99881 0.88084 0.86329 1.67673 1.16064 0.97988 1.37575 1.23049 0.96314 0.95521 0.93605 1.22289 1.00065 0.99335 0.94613 1.21925 1.01626 0.91695 1.02232 1.19702 1.01681 0.87904 0.91232 1.86022 1.82917 1.28573 1.26505 1.22973 0.99178 1.00389 0.76600 1.18933 0.96434 0.90583 0.94693 1.21377 1.45755 0.95645 0.95613 0.91181 1.25926 0.94871 0.94969 1.03558 1.70086 1.47898 1.00111 1.38571 0.85447 0.79259 0.77346 0.78690 1.18999 1.21043 1.19051 1.23407 0.93080 1.01046 1.00433 0.90671 0.91257 0.93021 0.91052 0.89168 0.73079 0.79824 0.80579 0.82345 0.91758 0.91813 0.97928 0.97841 0.92532 0.86727 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.14 71.98 0.66 -0.97 16 2 C -0.12 -1.59 3.60 -9.53 -0.03 -1.62 16 3 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.04 0.79 7.40 72.45 0.54 1.32 16 5 O -0.39 -10.32 10.61 -130.50 -1.38 -11.70 16 6 C 0.07 1.61 3.86 30.51 0.12 1.73 16 7 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 8 C 0.50 15.73 7.14 87.66 0.63 16.35 16 9 O -0.51 -20.34 14.80 15.42 0.23 -20.12 16 10 N -0.64 -19.55 5.39 -308.01 -1.66 -21.21 16 11 C 0.31 10.45 7.45 132.99 0.99 11.44 16 12 N -0.48 -16.36 7.88 -192.59 -1.52 -17.88 16 13 C 0.07 1.86 11.17 84.64 0.95 2.80 16 14 C -0.14 -3.13 10.10 22.36 0.23 -2.90 16 15 C -0.15 -3.99 9.14 22.54 0.21 -3.78 16 16 C 0.05 1.49 6.72 22.70 0.15 1.64 16 17 O -0.33 -11.86 9.38 -93.26 -0.88 -12.73 16 18 C 0.08 3.17 4.70 71.98 0.34 3.50 16 19 C 0.03 1.52 5.34 29.85 0.16 1.68 16 20 C -0.55 -28.70 9.11 25.60 0.23 -28.47 16 21 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 22 C 0.01 0.31 5.46 84.66 0.46 0.77 16 23 N -0.93 -53.39 13.29 21.45 0.28 -53.10 16 24 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 28 C -0.14 -2.52 6.02 32.05 0.19 -2.32 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.68 8.12 -2.38 -0.02 0.66 16 32 H 0.07 1.24 7.81 -2.39 -0.02 1.22 16 33 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.43 11.30 8.05 -92.71 -0.75 10.55 16 35 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 36 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.16 3.78 6.44 -2.91 -0.02 3.76 16 38 H 0.06 2.29 7.69 -2.38 -0.02 2.27 16 39 H 0.06 2.28 7.71 -2.39 -0.02 2.26 16 40 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 41 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 43 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.49 7.93 -2.38 -0.02 1.47 16 Total: -1.00 -74.04 369.61 3.18 -70.86 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.27 Total: 21.27 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 5.81 Total: 1.17 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -2.89 Total: -92.19 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -2.03 Total: -44.55 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -74.04 3.18 -70.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888864651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.440 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds