Wall clock time and date at job start Tue Mar 31 2020 13:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46627 * 2 1 4 4 C 1.50697 * 109.47322 * 239.99570 * 2 1 3 5 5 H 1.07993 * 120.00384 * 245.43360 * 4 2 1 6 6 C 1.37878 * 120.00002 * 65.43431 * 4 2 1 7 7 N 1.31519 * 120.00025 * 7.40628 * 6 4 2 8 8 Si 1.86791 * 120.00175 * 187.40782 * 6 4 2 9 9 H 1.48505 * 109.47056 * 84.99170 * 8 6 4 10 10 H 1.48505 * 109.47474 * 204.98674 * 8 6 4 11 11 H 1.48498 * 109.47209 * 324.99122 * 8 6 4 12 12 C 1.50698 * 109.46758 * 119.99218 * 2 1 3 13 13 O 1.21288 * 119.99330 * 120.00561 * 12 2 1 14 14 N 1.34768 * 120.00674 * 299.99971 * 12 2 1 15 15 C 1.39564 * 120.00615 * 184.63843 * 14 12 2 16 16 C 1.39338 * 120.82869 * 144.79345 * 15 14 12 17 17 C 1.38320 * 119.27730 * 179.97438 * 16 15 14 18 18 N 1.31597 * 120.98826 * 0.02562 * 17 16 15 19 19 C 1.32832 * 121.81444 * 0.02562 * 18 17 16 20 20 C 1.48087 * 119.69591 * 179.97438 * 19 18 17 21 21 O 1.21428 * 119.99895 * 179.97438 * 20 19 18 22 22 O 1.34677 * 119.99981 * 359.97438 * 20 19 18 23 23 C 1.45199 * 117.00144 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.46585 * 59.99946 * 23 22 20 25 25 C 1.52998 * 109.47094 * 179.97438 * 23 22 20 26 26 C 1.53000 * 109.47279 * 300.00356 * 23 22 20 27 27 C 1.39126 * 120.61090 * 359.73457 * 19 18 17 28 28 H 1.09000 * 109.47122 * 303.72680 * 1 2 3 29 29 H 1.08996 * 109.47112 * 63.72605 * 1 2 3 30 30 H 1.08996 * 109.47139 * 183.72676 * 1 2 3 31 31 H 0.96996 * 120.00356 * 180.02562 * 7 6 4 32 32 H 0.96999 * 120.00260 * 4.64511 * 14 12 2 33 33 H 1.07998 * 120.36438 * 359.96200 * 16 15 14 34 34 H 1.08002 * 119.50273 * 179.97438 * 17 16 15 35 35 H 1.09004 * 109.47380 * 60.00464 * 24 23 22 36 36 H 1.09002 * 109.46887 * 180.02562 * 24 23 22 37 37 H 1.08997 * 109.47130 * 299.99745 * 24 23 22 38 38 H 1.08998 * 109.46934 * 60.00412 * 25 23 22 39 39 H 1.09002 * 109.46836 * 180.02562 * 25 23 22 40 40 H 1.09007 * 109.47264 * 300.00371 * 25 23 22 41 41 H 1.08997 * 109.47582 * 59.99553 * 26 23 22 42 42 H 1.08993 * 109.46766 * 180.02562 * 26 23 22 43 43 H 1.09004 * 109.46484 * 299.99283 * 26 23 22 44 44 H 1.07997 * 120.51965 * 180.26549 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5790 -1.6368 -1.1337 6 6 1.7942 -0.1778 -2.4796 7 7 1.2590 1.0182 -2.5934 8 14 2.2315 -1.1548 -4.0104 9 1 1.1151 -2.0747 -4.3462 10 1 2.4625 -0.2228 -5.1433 11 1 3.4643 -1.9435 -3.7589 12 6 2.0323 -0.7102 1.2306 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.2496 -0.8482 3.5926 16 6 2.5672 -0.0882 4.7164 17 6 3.1033 -0.7145 5.8271 18 7 3.3167 -2.0131 5.8356 19 6 3.0303 -2.7767 4.7872 20 6 3.2902 -4.2333 4.8476 21 8 3.0301 -4.9366 3.8925 22 8 3.8151 -4.7780 5.9619 23 6 4.0425 -6.2120 5.9506 24 6 5.0147 -6.5651 4.8231 25 6 4.6388 -6.6444 7.2916 26 6 2.7145 -6.9373 5.7247 27 6 2.4839 -2.2214 3.6345 28 1 -0.3633 0.5706 0.8547 29 1 -0.3633 0.4549 -0.9215 30 1 -0.3633 -1.0254 0.0668 31 1 1.0911 1.3928 -3.4722 32 1 1.0950 0.4976 2.5448 33 1 2.3968 0.9782 4.7203 34 1 3.3512 -0.1289 6.7001 35 1 5.9609 -6.0485 4.9840 36 1 5.1851 -7.6417 4.8142 37 1 4.5903 -6.2570 3.8676 38 1 3.9465 -6.3927 8.0950 39 1 4.8100 -7.7209 7.2829 40 1 5.5851 -6.1276 7.4521 41 1 2.2900 -6.6292 4.7692 42 1 2.8852 -8.0137 5.7166 43 1 2.0219 -6.6857 6.5280 44 1 2.2476 -2.8443 2.7844 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892710214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:28 Heat of formation + Delta-G solvation = -90.058943 kcal Electronic energy + Delta-G solvation = -26829.061156 eV Core-core repulsion = 22939.665703 eV Total energy + Delta-G solvation = -3889.395453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.09196 -40.28142 -38.81392 -36.97960 -34.98700 -34.08814 -33.92344 -31.48750 -31.32847 -29.92908 -27.56986 -27.52790 -25.38485 -25.25072 -24.16372 -22.62448 -21.82596 -20.03451 -19.58606 -18.22101 -17.19976 -16.50950 -16.42760 -16.07058 -15.91399 -15.73654 -15.56870 -14.74086 -14.53688 -14.46442 -14.23401 -13.78944 -13.68568 -13.63183 -13.20172 -12.68810 -12.65914 -12.34259 -12.23793 -12.04645 -12.03386 -11.76476 -11.58781 -11.37837 -11.17471 -10.98300 -10.80272 -10.73846 -10.46508 -10.42166 -10.24176 -10.07904 -9.76101 -9.30757 -9.16830 -8.76558 -8.50277 -8.45477 -6.16567 -4.17422 0.52243 1.22611 2.42248 2.47450 3.28739 3.31996 3.35094 3.36629 3.45275 3.86172 4.09670 4.39485 4.55446 4.60441 4.66035 4.75386 4.88987 5.02257 5.14243 5.19517 5.30773 5.37746 5.46096 5.52001 5.53292 5.61763 5.69037 5.75281 5.82895 5.93169 6.09900 6.11432 6.17098 6.33347 6.39642 6.43344 6.59935 6.67809 6.85764 7.24360 7.49211 7.59659 7.69759 7.88327 7.95137 8.15951 8.78987 8.92115 9.48019 10.93581 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.003114 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.737895 B = 8988.463563 C =10325.911117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.033 3.967 3 H 0.065 0.935 4 C -0.509 4.509 5 H 0.076 0.924 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.518 3.482 13 O -0.512 6.512 14 N -0.684 5.684 15 C 0.199 3.801 16 C -0.181 4.181 17 C 0.112 3.888 18 N -0.458 5.458 19 C 0.100 3.900 20 C 0.528 3.472 21 O -0.487 6.487 22 O -0.327 6.327 23 C 0.113 3.887 24 C -0.185 4.185 25 C -0.138 4.138 26 C -0.184 4.184 27 C -0.111 4.111 28 H 0.018 0.982 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.414 0.586 33 H 0.145 0.855 34 H 0.166 0.834 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -6.201 19.680 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.012 3.988 3 H 0.083 0.917 4 C -0.547 4.547 5 H 0.094 0.906 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.385 6.385 14 N -0.330 5.330 15 C 0.094 3.906 16 C -0.204 4.204 17 C -0.048 4.048 18 N -0.172 5.172 19 C -0.036 4.036 20 C 0.371 3.629 21 O -0.373 6.373 22 O -0.244 6.244 23 C 0.077 3.923 24 C -0.242 4.242 25 C -0.195 4.195 26 C -0.241 4.241 27 C -0.134 4.134 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.251 0.749 33 H 0.162 0.838 34 H 0.183 0.817 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.498 -7.469 19.771 21.282 hybrid contribution -0.452 0.397 -1.585 1.696 sum 2.045 -7.072 18.185 19.619 Atomic orbital electron populations 1.21733 0.96473 0.99489 1.01166 1.18936 0.93972 0.97484 0.88426 0.91747 1.21066 1.35757 1.08941 0.88919 0.90615 1.24934 0.95031 0.94745 0.99199 1.69930 1.44212 1.14950 1.24155 0.86470 0.79166 0.79811 0.81854 1.20425 1.21279 1.19681 1.22529 0.78306 0.84360 0.83924 1.90592 1.36403 1.25460 1.86002 1.44178 1.47912 1.36632 1.04311 1.18058 0.93499 0.91203 0.87806 1.22256 1.02206 1.01415 0.94571 1.22562 0.94963 0.89888 0.97423 1.67602 1.15717 1.06602 1.27269 1.19856 1.01286 0.91150 0.91270 1.20663 0.74137 0.87510 0.80627 1.90798 1.48077 1.61515 1.36941 1.86712 1.73863 1.25157 1.38627 1.22239 0.96056 0.76752 0.97258 1.22513 0.99185 1.02471 1.00052 1.21820 1.01646 1.01384 0.94639 1.22501 0.96462 1.00865 1.04270 1.22299 0.97874 0.94530 0.98705 0.96330 0.89916 0.94540 0.92748 0.74914 0.83770 0.81706 0.91883 0.91020 0.89630 0.91439 0.90430 0.91402 0.89712 0.91013 0.91960 0.81663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.93 37.16 0.33 -2.40 16 2 C 0.03 0.77 2.51 -92.92 -0.23 0.53 16 3 H 0.06 1.55 8.10 -51.93 -0.42 1.13 16 4 C -0.51 -13.87 8.29 -34.44 -0.29 -14.16 16 5 H 0.08 2.20 6.78 -52.49 -0.36 1.84 16 6 C 0.06 1.69 5.21 -17.82 -0.09 1.60 16 7 N -0.89 -24.39 12.06 55.43 0.67 -23.72 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.52 11.01 7.01 -10.99 -0.08 10.94 16 13 O -0.51 -12.63 12.99 5.55 0.07 -12.56 16 14 N -0.68 -11.00 5.27 -9.72 -0.05 -11.05 16 15 C 0.20 3.08 6.33 -83.51 -0.53 2.55 16 16 C -0.18 -2.12 10.06 -39.14 -0.39 -2.51 16 17 C 0.11 1.29 11.17 -17.62 -0.20 1.09 16 18 N -0.46 -6.70 10.11 -9.89 -0.10 -6.80 16 19 C 0.10 1.64 6.74 -83.06 -0.56 1.08 16 20 C 0.53 8.64 7.26 34.77 0.25 8.89 16 21 O -0.49 -8.70 11.86 -19.21 -0.23 -8.92 16 22 O -0.33 -4.73 9.70 -40.43 -0.39 -5.12 16 23 C 0.11 1.30 1.13 -90.62 -0.10 1.20 16 24 C -0.19 -2.12 8.37 37.16 0.31 -1.81 16 25 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16 26 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 27 C -0.11 -1.94 8.29 -38.83 -0.32 -2.26 16 28 H 0.02 0.30 7.57 -51.93 -0.39 -0.09 16 29 H 0.08 1.93 6.74 -51.93 -0.35 1.58 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.41 5.27 8.19 -40.82 -0.33 4.94 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.21 5.88 -51.93 -0.31 0.90 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.08 1.13 5.88 -51.93 -0.31 0.82 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.17 3.35 5.94 -52.49 -0.31 3.03 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -31.90 366.03 -6.93 -38.83 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.14 Total: 5.26 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.26 Total: 2.20 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.52 Total: -41.58 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.55 Total: -26.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.90 -6.93 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892710214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.224 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds