Wall clock time and date at job start Tue Mar 31 2020 13:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46627 * 2 1 4 4 C 1.50697 * 109.47322 * 239.99570 * 2 1 3 5 5 H 1.07993 * 120.00384 * 245.43360 * 4 2 1 6 6 C 1.37878 * 120.00002 * 65.43431 * 4 2 1 7 7 N 1.31519 * 120.00025 * 7.40628 * 6 4 2 8 8 Si 1.86791 * 120.00175 * 187.40782 * 6 4 2 9 9 H 1.48505 * 109.47056 * 84.99170 * 8 6 4 10 10 H 1.48505 * 109.47474 * 204.98674 * 8 6 4 11 11 H 1.48498 * 109.47209 * 324.99122 * 8 6 4 12 12 C 1.50698 * 109.46758 * 119.99218 * 2 1 3 13 13 O 1.21288 * 119.99330 * 120.00561 * 12 2 1 14 14 N 1.34768 * 120.00674 * 299.99971 * 12 2 1 15 15 C 1.39564 * 120.00615 * 184.63843 * 14 12 2 16 16 C 1.39338 * 120.82869 * 144.79345 * 15 14 12 17 17 C 1.38320 * 119.27730 * 179.97438 * 16 15 14 18 18 N 1.31597 * 120.98826 * 0.02562 * 17 16 15 19 19 C 1.32832 * 121.81444 * 0.02562 * 18 17 16 20 20 C 1.48087 * 119.69591 * 179.97438 * 19 18 17 21 21 O 1.21428 * 119.99895 * 179.97438 * 20 19 18 22 22 O 1.34677 * 119.99981 * 359.97438 * 20 19 18 23 23 C 1.45199 * 117.00144 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.46585 * 59.99946 * 23 22 20 25 25 C 1.52998 * 109.47094 * 179.97438 * 23 22 20 26 26 C 1.53000 * 109.47279 * 300.00356 * 23 22 20 27 27 C 1.39126 * 120.61090 * 359.73457 * 19 18 17 28 28 H 1.09000 * 109.47122 * 303.72680 * 1 2 3 29 29 H 1.08996 * 109.47112 * 63.72605 * 1 2 3 30 30 H 1.08996 * 109.47139 * 183.72676 * 1 2 3 31 31 H 0.96996 * 120.00356 * 180.02562 * 7 6 4 32 32 H 0.96999 * 120.00260 * 4.64511 * 14 12 2 33 33 H 1.07998 * 120.36438 * 359.96200 * 16 15 14 34 34 H 1.08002 * 119.50273 * 179.97438 * 17 16 15 35 35 H 1.09004 * 109.47380 * 60.00464 * 24 23 22 36 36 H 1.09002 * 109.46887 * 180.02562 * 24 23 22 37 37 H 1.08997 * 109.47130 * 299.99745 * 24 23 22 38 38 H 1.08998 * 109.46934 * 60.00412 * 25 23 22 39 39 H 1.09002 * 109.46836 * 180.02562 * 25 23 22 40 40 H 1.09007 * 109.47264 * 300.00371 * 25 23 22 41 41 H 1.08997 * 109.47582 * 59.99553 * 26 23 22 42 42 H 1.08993 * 109.46766 * 180.02562 * 26 23 22 43 43 H 1.09004 * 109.46484 * 299.99283 * 26 23 22 44 44 H 1.07997 * 120.51965 * 180.26549 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5790 -1.6368 -1.1337 6 6 1.7942 -0.1778 -2.4796 7 7 1.2590 1.0182 -2.5934 8 14 2.2315 -1.1548 -4.0104 9 1 1.1151 -2.0747 -4.3462 10 1 2.4625 -0.2228 -5.1433 11 1 3.4643 -1.9435 -3.7589 12 6 2.0323 -0.7102 1.2306 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.2496 -0.8482 3.5926 16 6 2.5672 -0.0882 4.7164 17 6 3.1033 -0.7145 5.8271 18 7 3.3167 -2.0131 5.8356 19 6 3.0303 -2.7767 4.7872 20 6 3.2902 -4.2333 4.8476 21 8 3.0301 -4.9366 3.8925 22 8 3.8151 -4.7780 5.9619 23 6 4.0425 -6.2120 5.9506 24 6 5.0147 -6.5651 4.8231 25 6 4.6388 -6.6444 7.2916 26 6 2.7145 -6.9373 5.7247 27 6 2.4839 -2.2214 3.6345 28 1 -0.3633 0.5706 0.8547 29 1 -0.3633 0.4549 -0.9215 30 1 -0.3633 -1.0254 0.0668 31 1 1.0911 1.3928 -3.4722 32 1 1.0950 0.4976 2.5448 33 1 2.3968 0.9782 4.7203 34 1 3.3512 -0.1289 6.7001 35 1 5.9609 -6.0485 4.9840 36 1 5.1851 -7.6417 4.8142 37 1 4.5903 -6.2570 3.8676 38 1 3.9465 -6.3927 8.0950 39 1 4.8100 -7.7209 7.2829 40 1 5.5851 -6.1276 7.4521 41 1 2.2900 -6.6292 4.7692 42 1 2.8852 -8.0137 5.7166 43 1 2.0219 -6.6857 6.5280 44 1 2.2476 -2.8443 2.7844 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892710214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:26 Heat of formation + Delta-G solvation = -110.485489 kcal Electronic energy + Delta-G solvation = -26829.946917 eV Core-core repulsion = 22939.665703 eV Total energy + Delta-G solvation = -3890.281214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -42.28321 -41.55634 -40.22652 -38.11799 -36.41710 -35.85444 -35.08535 -33.05565 -32.59168 -31.42159 -28.43371 -28.31950 -27.22719 -26.54024 -25.61487 -24.01399 -23.00407 -21.48495 -20.81118 -19.48356 -18.47284 -18.35904 -17.71126 -17.26732 -17.18628 -17.04426 -16.88096 -16.48672 -15.74867 -15.63338 -15.48041 -15.12060 -14.83542 -14.75680 -14.60914 -14.47831 -13.67160 -13.43086 -13.31226 -13.16878 -12.99724 -12.97037 -12.90541 -12.85825 -12.63555 -12.57282 -12.40059 -12.32786 -12.07010 -12.00568 -11.46252 -11.36237 -11.13960 -11.01411 -10.57108 -10.47342 -10.27693 -9.78190 -8.23840 -6.29860 -0.63185 0.05260 1.23954 1.37949 1.38838 1.39733 1.49631 1.72202 2.02718 2.42285 2.71853 3.05609 3.09542 3.60665 3.68748 3.74642 3.79388 3.85628 3.91064 4.12884 4.19418 4.45112 4.52671 4.55580 4.66655 4.67698 4.71137 4.78379 4.82967 4.84548 4.85254 4.91032 4.97092 5.08402 5.21195 5.22807 5.24584 5.38280 5.41950 5.59266 5.69049 5.79825 6.07630 6.46804 6.48606 6.78120 6.81256 7.19902 7.38692 8.85083 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.003114 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.737895 B = 8988.463563 C =10325.911117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.030 3.970 3 H 0.058 0.942 4 C -0.534 4.534 5 H 0.046 0.954 6 C 0.027 3.973 7 N -0.908 5.908 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.282 1.282 12 C 0.522 3.478 13 O -0.557 6.557 14 N -0.662 5.662 15 C 0.176 3.824 16 C -0.149 4.149 17 C 0.121 3.879 18 N -0.464 5.464 19 C 0.084 3.916 20 C 0.524 3.476 21 O -0.515 6.515 22 O -0.330 6.330 23 C 0.100 3.900 24 C -0.183 4.183 25 C -0.131 4.131 26 C -0.181 4.181 27 C -0.133 4.133 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.267 0.733 32 H 0.432 0.568 33 H 0.192 0.808 34 H 0.218 0.782 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -5.004 22.471 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.009 3.991 3 H 0.075 0.925 4 C -0.573 4.573 5 H 0.065 0.935 6 C -0.173 4.173 7 N -0.546 5.546 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.207 1.207 12 C 0.313 3.687 13 O -0.433 6.433 14 N -0.310 5.310 15 C 0.072 3.928 16 C -0.171 4.171 17 C -0.039 4.039 18 N -0.178 5.178 19 C -0.050 4.050 20 C 0.368 3.632 21 O -0.403 6.403 22 O -0.246 6.246 23 C 0.064 3.936 24 C -0.240 4.240 25 C -0.188 4.188 26 C -0.238 4.238 27 C -0.157 4.157 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.273 0.727 33 H 0.209 0.791 34 H 0.234 0.766 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.556 -6.240 22.612 23.596 hybrid contribution -0.444 0.048 -2.318 2.360 sum 2.112 -6.192 20.294 21.322 Atomic orbital electron populations 1.21568 0.94609 0.99589 1.01965 1.18830 0.95400 0.96557 0.88295 0.92460 1.21223 1.36258 1.08508 0.91274 0.93522 1.25489 0.95036 0.95562 1.01212 1.69975 1.44422 1.15433 1.24815 0.85719 0.78533 0.78872 0.79451 1.19848 1.19897 1.20710 1.22043 0.77889 0.83634 0.85171 1.90592 1.38509 1.27275 1.86890 1.43631 1.47769 1.36557 1.03073 1.18246 0.95085 0.90782 0.88701 1.22729 0.98868 1.03238 0.92232 1.23490 0.92803 0.88899 0.98751 1.67682 1.15673 1.08145 1.26293 1.19807 1.02207 0.91460 0.91562 1.20853 0.73818 0.87802 0.80721 1.90790 1.49314 1.62243 1.37978 1.86699 1.73249 1.27077 1.37592 1.22679 0.96497 0.75303 0.99103 1.22492 0.98909 1.04169 0.98446 1.21848 1.01468 1.02983 0.92484 1.22471 0.96226 1.02362 1.02711 1.22067 0.99798 0.95620 0.98208 0.91708 0.92261 0.95269 0.92413 0.72721 0.79093 0.76570 0.91796 0.88358 0.93005 0.90893 0.87768 0.91224 0.92821 0.88446 0.91348 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 8.93 71.98 0.64 -4.32 16 2 C 0.03 1.44 2.51 -12.29 -0.03 1.41 16 3 H 0.06 2.79 8.10 -2.38 -0.02 2.77 16 4 C -0.53 -30.25 8.29 25.60 0.21 -30.03 16 5 H 0.05 2.87 6.78 -2.91 -0.02 2.85 16 6 C 0.03 1.49 5.21 84.65 0.44 1.93 16 7 N -0.91 -49.79 12.06 21.45 0.26 -49.53 16 8 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 12 C 0.52 22.78 7.01 87.66 0.61 23.39 16 13 O -0.56 -29.15 12.99 -3.05 -0.04 -29.19 16 14 N -0.66 -20.69 5.27 -303.06 -1.60 -22.29 16 15 C 0.18 5.23 6.33 38.45 0.24 5.48 16 16 C -0.15 -2.85 10.06 22.55 0.23 -2.63 16 17 C 0.12 2.26 11.17 84.75 0.95 3.20 16 18 N -0.46 -12.73 10.11 -185.19 -1.87 -14.60 16 19 C 0.08 2.82 6.74 41.82 0.28 3.11 16 20 C 0.52 18.11 7.26 70.44 0.51 18.62 16 21 O -0.51 -20.12 11.86 20.07 0.24 -19.88 16 22 O -0.33 -9.68 9.70 -55.86 -0.54 -10.22 16 23 C 0.10 2.26 1.13 -10.79 -0.01 2.24 16 24 C -0.18 -4.26 8.37 71.98 0.60 -3.65 16 25 C -0.13 -1.93 8.85 71.98 0.64 -1.29 16 26 C -0.18 -3.93 8.37 71.98 0.60 -3.32 16 27 C -0.13 -4.87 8.29 22.76 0.19 -4.68 16 28 H 0.06 2.04 7.57 -2.39 -0.02 2.02 16 29 H 0.06 2.76 6.74 -2.39 -0.02 2.74 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.43 9.87 8.19 -92.71 -0.76 9.11 16 33 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.57 5.88 -2.39 -0.01 1.56 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.05 1.52 5.88 -2.39 -0.01 1.51 16 42 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 44 H 0.13 5.61 5.94 -2.91 -0.02 5.60 16 Total: -1.00 -75.62 366.03 4.85 -70.77 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.27 Total: 18.82 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 6.11 Total: 9.46 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -3.21 Total: -86.42 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -0.34 Total: -59.28 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -75.62 4.85 -70.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892710214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.720 kcal (2) G-P(sol) polarization free energy of solvation -75.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds