Wall clock time and date at job start Tue Mar 31 2020 13:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00368 * 4 2 1 6 6 O 1.21279 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.50708 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.46960 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47171 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.47364 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47105 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99831 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00160 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99768 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46982 * 90.00494 * 15 13 11 17 17 H 1.48503 * 109.47337 * 210.00086 * 15 13 11 18 18 H 1.48495 * 109.47701 * 330.00293 * 15 13 11 19 19 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 20 20 C 1.38227 * 120.00116 * 279.72970 * 19 2 1 21 21 C 1.38235 * 119.99881 * 179.78825 * 20 19 2 22 22 C 1.38243 * 120.00013 * 0.46111 * 21 20 19 23 23 N 1.48020 * 120.00045 * 179.79010 * 22 21 20 24 24 O 1.21794 * 119.99765 * 179.97438 * 23 22 21 25 25 O 1.21799 * 119.99772 * 359.97438 * 23 22 21 26 26 C 1.38227 * 119.99789 * 359.77090 * 22 21 20 27 27 C 1.38237 * 119.99426 * 100.00170 * 19 2 1 28 28 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 31 31 H 0.96997 * 120.00110 * 94.99637 * 4 2 1 32 32 H 1.08994 * 109.47136 * 300.00021 * 7 5 4 33 33 H 1.09002 * 109.46457 * 59.99935 * 7 5 4 34 34 H 1.08994 * 109.47599 * 300.00210 * 8 7 5 35 35 H 1.09002 * 109.47005 * 60.00348 * 8 7 5 36 36 H 1.09005 * 109.46914 * 300.00002 * 9 8 7 37 37 H 1.09002 * 109.47099 * 60.00127 * 9 8 7 38 38 H 1.09005 * 109.46692 * 299.99630 * 10 9 8 39 39 H 1.08993 * 109.47512 * 59.99668 * 10 9 8 40 40 H 0.97000 * 119.99573 * 179.97438 * 14 13 11 41 41 H 1.07993 * 120.00302 * 359.97438 * 20 19 2 42 42 H 1.08000 * 120.00519 * 180.25415 * 21 20 19 43 43 H 1.07995 * 119.99996 * 180.02562 * 26 22 21 44 44 H 1.07996 * 120.00567 * 359.97438 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6488 -0.7288 3.5878 8 6 2.7008 0.2545 4.7588 9 6 3.2109 -0.4667 6.0081 10 6 3.2623 0.5164 7.1792 11 6 3.7653 -0.1938 8.4096 12 1 4.0221 -1.2417 8.3611 13 6 3.8976 0.4942 9.5971 14 7 3.5844 1.7701 9.6562 15 14 4.5203 -0.3864 11.1223 16 1 6.0004 -0.2821 11.1844 17 1 3.9288 0.2401 12.3318 18 1 4.1270 -1.8171 11.0632 19 6 2.0324 -0.7105 -1.2304 20 6 2.0721 -2.0918 -1.2631 21 6 2.5288 -2.7435 -2.3934 22 6 2.9548 -2.0137 -3.4875 23 7 3.4482 -2.7115 -4.6960 24 8 3.8231 -2.0684 -5.6600 25 8 3.4793 -3.9287 -4.7263 26 6 2.9196 -0.6323 -3.4529 27 6 2.4588 0.0194 -2.3242 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2490 -1.6317 1.1527 32 1 1.9759 -1.5505 3.8326 33 1 3.6479 -1.1213 3.3987 34 1 3.3739 1.0760 4.5138 35 1 1.7018 0.6474 4.9480 36 1 2.5380 -1.2885 6.2533 37 1 4.2099 -0.8592 5.8186 38 1 3.9350 1.3384 6.9342 39 1 2.2632 0.9086 7.3686 40 1 3.6771 2.2540 10.4918 41 1 1.7435 -2.6619 -0.4068 42 1 2.5560 -3.8228 -2.4206 43 1 3.2520 -0.0621 -4.3077 44 1 2.4316 1.0987 -2.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928245411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:00 Heat of formation + Delta-G solvation = -42.291256 kcal Electronic energy + Delta-G solvation = -25074.620977 eV Core-core repulsion = 21187.296887 eV Total energy + Delta-G solvation = -3887.324091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.61977 -40.77454 -39.54777 -36.99092 -36.25735 -34.91292 -32.89772 -32.51115 -32.04237 -30.67877 -29.44034 -27.03657 -25.79228 -24.07705 -23.87827 -22.56580 -21.39987 -20.47818 -20.04263 -19.86862 -19.05553 -17.95194 -17.64892 -16.87662 -16.19766 -16.01610 -15.80562 -15.52402 -15.12301 -14.64229 -14.47534 -14.47021 -14.05432 -13.87557 -13.50814 -13.10492 -12.70030 -12.51284 -12.23978 -12.21549 -11.99444 -11.76172 -11.73431 -11.65190 -11.56075 -11.55661 -11.02176 -10.60181 -10.54311 -10.46716 -10.17890 -10.07048 -9.93117 -9.67071 -9.48352 -9.27267 -9.02291 -8.33579 -5.98365 -4.01005 -0.71885 0.28201 0.79333 0.92475 2.50899 2.57110 2.86669 3.31621 3.37879 3.40792 3.66943 3.71075 3.85048 4.21950 4.25284 4.45944 4.53579 4.67154 4.67289 4.81176 4.97019 5.02766 5.09033 5.18607 5.22099 5.26763 5.30127 5.37088 5.52533 5.60317 5.71886 5.76648 5.94383 6.06225 6.06412 6.22858 6.47626 6.77392 6.95015 7.12977 7.18541 7.18895 7.70360 7.85711 8.02383 8.05117 8.44334 9.06615 9.62811 11.12872 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.001711 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.091007 B =16357.841333 C =16975.612616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.175 3.825 3 H 0.106 0.894 4 N -0.737 5.737 5 C 0.516 3.484 6 O -0.529 6.529 7 C -0.139 4.139 8 C -0.103 4.103 9 C -0.111 4.111 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.035 4.035 20 C -0.114 4.114 21 C -0.048 4.048 22 C -0.048 4.048 23 N 0.028 4.972 24 O -0.160 6.160 25 O -0.159 6.159 26 C -0.049 4.049 27 C -0.106 4.106 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.399 0.601 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -7.667 -28.489 29.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.070 3.930 3 H 0.124 0.876 4 N -0.392 5.392 5 C 0.304 3.696 6 O -0.404 6.404 7 C -0.179 4.179 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.018 4.018 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.036 4.036 20 C -0.133 4.133 21 C -0.067 4.067 22 C -0.131 4.131 23 N 0.548 4.452 24 O -0.376 6.376 25 O -0.375 6.375 26 C -0.068 4.068 27 C -0.125 4.125 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.235 0.765 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.165 0.835 42 H 0.174 0.826 43 H 0.174 0.826 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.748 -6.307 -27.723 29.007 hybrid contribution 0.605 -1.127 0.461 1.359 sum -5.143 -7.433 -27.263 28.722 Atomic orbital electron populations 1.22198 0.93219 1.02878 1.03570 1.19882 0.94876 0.97214 0.81007 0.87605 1.46271 1.69377 1.14118 1.09439 1.21169 0.76579 0.87504 0.84355 1.90720 1.48804 1.16101 1.84786 1.21817 1.02582 1.00552 0.92918 1.21459 1.02524 0.97214 0.92951 1.21654 0.99189 0.99281 0.94696 1.19097 0.97236 0.94121 0.91298 1.21276 1.43631 0.96326 0.94715 0.92757 1.25044 0.95658 0.94885 0.98988 1.69973 1.48675 1.08188 1.26571 0.86608 0.78964 0.79772 0.82716 1.20707 1.21237 1.19932 1.20535 0.93319 0.94063 0.95644 1.21015 1.00354 0.93850 0.98060 1.21070 0.93259 1.02061 0.90327 1.21175 1.10847 0.93208 0.87837 1.43630 0.98252 1.01192 1.02164 1.94552 1.49532 1.67169 1.26327 1.94554 1.58856 0.95611 1.88518 1.21091 0.94696 0.91360 0.99658 1.21123 0.98456 1.01425 0.91525 0.91275 0.91981 0.90614 0.76536 0.88973 0.89032 0.91771 0.91741 0.93453 0.93464 0.96598 0.96574 0.93032 0.83462 0.82626 0.82622 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.46 37.16 0.35 -0.64 16 2 C 0.18 1.13 2.78 -69.08 -0.19 0.94 16 3 H 0.11 0.83 7.44 -51.93 -0.39 0.45 16 4 N -0.74 -5.44 5.03 -54.93 -0.28 -5.71 16 5 C 0.52 5.99 7.79 -10.98 -0.09 5.91 16 6 O -0.53 -8.36 15.64 5.56 0.09 -8.28 16 7 C -0.14 -1.61 5.70 -27.88 -0.16 -1.77 16 8 C -0.10 -1.73 4.50 -26.73 -0.12 -1.85 16 9 C -0.11 -2.19 5.15 -26.73 -0.14 -2.32 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 11 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.03 -0.17 4.96 -104.63 -0.52 -0.69 16 20 C -0.11 -0.48 9.06 -39.59 -0.36 -0.84 16 21 C -0.05 -0.26 9.56 -39.58 -0.38 -0.64 16 22 C -0.05 -0.34 6.85 -79.95 -0.55 -0.89 16 23 N 0.03 0.28 4.45 33.96 0.15 0.43 16 24 O -0.16 -1.71 18.45 -29.46 -0.54 -2.25 16 25 O -0.16 -1.70 18.45 -29.46 -0.54 -2.24 16 26 C -0.05 -0.27 9.56 -39.58 -0.38 -0.65 16 27 C -0.11 -0.49 9.67 -39.58 -0.38 -0.87 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.40 1.85 6.85 -40.82 -0.28 1.57 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.15 0.30 6.90 -52.49 -0.36 -0.06 16 42 H 0.16 0.66 7.61 -52.49 -0.40 0.26 16 43 H 0.16 0.69 7.61 -52.49 -0.40 0.29 16 44 H 0.15 0.41 8.04 -52.49 -0.42 -0.01 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -34.91 380.73 -9.56 -44.48 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -6.44 Total: -4.80 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -3.46 Total: -17.56 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.61 Total: -31.73 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.00 Total: -12.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.91 -9.56 -44.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928245411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.185 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds