Wall clock time and date at job start Tue Mar 31 2020 13:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00368 * 4 2 1 6 6 O 1.21279 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.50708 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.46960 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47171 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.47364 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47105 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99831 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00160 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99768 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46982 * 90.00494 * 15 13 11 17 17 H 1.48503 * 109.47337 * 210.00086 * 15 13 11 18 18 H 1.48495 * 109.47701 * 330.00293 * 15 13 11 19 19 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 20 20 C 1.38227 * 120.00116 * 279.72970 * 19 2 1 21 21 C 1.38235 * 119.99881 * 179.78825 * 20 19 2 22 22 C 1.38243 * 120.00013 * 0.46111 * 21 20 19 23 23 N 1.48020 * 120.00045 * 179.79010 * 22 21 20 24 24 O 1.21794 * 119.99765 * 179.97438 * 23 22 21 25 25 O 1.21799 * 119.99772 * 359.97438 * 23 22 21 26 26 C 1.38227 * 119.99789 * 359.77090 * 22 21 20 27 27 C 1.38237 * 119.99426 * 100.00170 * 19 2 1 28 28 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 31 31 H 0.96997 * 120.00110 * 94.99637 * 4 2 1 32 32 H 1.08994 * 109.47136 * 300.00021 * 7 5 4 33 33 H 1.09002 * 109.46457 * 59.99935 * 7 5 4 34 34 H 1.08994 * 109.47599 * 300.00210 * 8 7 5 35 35 H 1.09002 * 109.47005 * 60.00348 * 8 7 5 36 36 H 1.09005 * 109.46914 * 300.00002 * 9 8 7 37 37 H 1.09002 * 109.47099 * 60.00127 * 9 8 7 38 38 H 1.09005 * 109.46692 * 299.99630 * 10 9 8 39 39 H 1.08993 * 109.47512 * 59.99668 * 10 9 8 40 40 H 0.97000 * 119.99573 * 179.97438 * 14 13 11 41 41 H 1.07993 * 120.00302 * 359.97438 * 20 19 2 42 42 H 1.08000 * 120.00519 * 180.25415 * 21 20 19 43 43 H 1.07995 * 119.99996 * 180.02562 * 26 22 21 44 44 H 1.07996 * 120.00567 * 359.97438 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6488 -0.7288 3.5878 8 6 2.7008 0.2545 4.7588 9 6 3.2109 -0.4667 6.0081 10 6 3.2623 0.5164 7.1792 11 6 3.7653 -0.1938 8.4096 12 1 4.0221 -1.2417 8.3611 13 6 3.8976 0.4942 9.5971 14 7 3.5844 1.7701 9.6562 15 14 4.5203 -0.3864 11.1223 16 1 6.0004 -0.2821 11.1844 17 1 3.9288 0.2401 12.3318 18 1 4.1270 -1.8171 11.0632 19 6 2.0324 -0.7105 -1.2304 20 6 2.0721 -2.0918 -1.2631 21 6 2.5288 -2.7435 -2.3934 22 6 2.9548 -2.0137 -3.4875 23 7 3.4482 -2.7115 -4.6960 24 8 3.8231 -2.0684 -5.6600 25 8 3.4793 -3.9287 -4.7263 26 6 2.9196 -0.6323 -3.4529 27 6 2.4588 0.0194 -2.3242 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2490 -1.6317 1.1527 32 1 1.9759 -1.5505 3.8326 33 1 3.6479 -1.1213 3.3987 34 1 3.3739 1.0760 4.5138 35 1 1.7018 0.6474 4.9480 36 1 2.5380 -1.2885 6.2533 37 1 4.2099 -0.8592 5.8186 38 1 3.9350 1.3384 6.9342 39 1 2.2632 0.9086 7.3686 40 1 3.6771 2.2540 10.4918 41 1 1.7435 -2.6619 -0.4068 42 1 2.5560 -3.8228 -2.4206 43 1 3.2520 -0.0621 -4.3077 44 1 2.4316 1.0987 -2.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928245411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:59 Heat of formation + Delta-G solvation = -62.698856 kcal Electronic energy + Delta-G solvation = -25075.505917 eV Core-core repulsion = 21187.296887 eV Total energy + Delta-G solvation = -3888.209031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.28483 -41.39268 -40.28427 -37.71783 -37.06014 -36.43790 -34.60813 -33.38579 -32.45472 -31.67308 -30.66358 -27.66506 -27.42355 -24.88128 -24.45872 -23.79816 -22.22648 -21.64956 -21.26568 -20.43136 -19.75094 -18.62997 -18.44486 -18.35580 -17.54316 -16.84974 -16.56556 -16.47246 -15.97007 -15.71310 -15.59335 -14.92066 -14.77795 -14.77198 -14.53103 -14.00693 -13.94891 -13.59343 -13.44447 -13.28285 -12.98021 -12.81477 -12.79199 -12.59592 -12.36689 -12.34176 -12.33738 -12.16138 -12.13703 -12.09498 -11.36100 -11.34799 -11.16113 -10.83117 -10.54965 -10.54551 -10.43647 -10.18640 -8.18518 -6.30431 -1.32893 -0.07889 0.18954 0.34354 1.40704 1.42522 1.53558 1.64523 2.02030 2.27965 2.42085 3.14296 3.19174 3.33130 3.46672 3.79103 3.81256 3.88231 4.07230 4.14507 4.20333 4.22647 4.27159 4.55689 4.64594 4.66755 4.70668 4.71451 4.76289 4.84301 4.87975 4.89939 5.07360 5.10452 5.21010 5.22182 5.34514 5.37870 5.40811 5.45544 5.58663 5.79536 5.89135 6.25920 6.41636 6.49212 6.88302 7.24724 7.39201 8.93482 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.001711 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.091007 B =16357.841333 C =16975.612616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.177 3.823 3 H 0.092 0.908 4 N -0.717 5.717 5 C 0.517 3.483 6 O -0.580 6.580 7 C -0.130 4.130 8 C -0.096 4.096 9 C -0.096 4.096 10 C 0.017 3.983 11 C -0.542 4.542 12 H 0.066 0.934 13 C -0.007 4.007 14 N -0.937 5.937 15 Si 0.968 3.032 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.259 1.259 19 C -0.031 4.031 20 C -0.104 4.104 21 C -0.047 4.047 22 C -0.065 4.065 23 N 0.030 4.970 24 O -0.186 6.186 25 O -0.179 6.179 26 C -0.051 4.051 27 C -0.102 4.102 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.417 0.583 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.060 0.940 38 H -0.016 1.016 39 H -0.015 1.015 40 H 0.262 0.738 41 H 0.175 0.825 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 -10.032 -28.490 30.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.073 3.927 3 H 0.110 0.890 4 N -0.372 5.372 5 C 0.306 3.694 6 O -0.459 6.459 7 C -0.170 4.170 8 C -0.135 4.135 9 C -0.134 4.134 10 C -0.020 4.020 11 C -0.580 4.580 12 H 0.084 0.916 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.183 1.183 19 C -0.032 4.032 20 C -0.123 4.123 21 C -0.066 4.066 22 C -0.148 4.148 23 N 0.544 4.456 24 O -0.398 6.398 25 O -0.393 6.393 26 C -0.070 4.070 27 C -0.121 4.121 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.255 0.745 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.003 0.997 39 H 0.004 0.996 40 H 0.071 0.929 41 H 0.193 0.807 42 H 0.185 0.815 43 H 0.180 0.820 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.693 -8.732 -27.791 29.682 hybrid contribution 0.546 -0.324 0.482 0.797 sum -5.147 -9.056 -27.309 29.228 Atomic orbital electron populations 1.22164 0.92727 1.03688 1.02986 1.19858 0.95195 0.96685 0.81005 0.89011 1.46033 1.67835 1.14799 1.08495 1.21112 0.76125 0.86807 0.85382 1.90716 1.51279 1.18283 1.85624 1.21689 1.04990 0.99534 0.90738 1.21243 1.00526 0.97700 0.94002 1.21452 1.00508 0.98035 0.93405 1.19069 0.94464 0.94675 0.93764 1.21766 1.43479 0.97027 0.95685 0.91593 1.26080 0.95779 0.95651 1.02891 1.70129 1.49908 1.10064 1.27627 0.85401 0.78485 0.78983 0.77886 1.19808 1.20995 1.18325 1.20436 0.93362 0.94425 0.94928 1.21258 0.99184 0.93513 0.98328 1.21273 0.92748 1.02696 0.89921 1.21413 1.12282 0.93856 0.87215 1.44009 0.97731 1.01086 1.02763 1.94536 1.50613 1.67072 1.27570 1.94530 1.59461 0.96360 1.88909 1.21236 0.94636 0.90862 1.00288 1.21318 0.97542 1.02384 0.90868 0.89971 0.90438 0.93156 0.74464 0.86091 0.86414 0.93904 0.93744 0.92044 0.92166 0.99746 0.99636 0.92897 0.80738 0.81542 0.81966 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.46 71.98 0.68 -0.92 16 2 C 0.18 1.88 2.78 44.25 0.12 2.00 16 3 H 0.09 1.32 7.44 -2.39 -0.02 1.30 16 4 N -0.72 -8.44 5.03 -446.08 -2.24 -10.68 16 5 C 0.52 11.10 7.79 87.66 0.68 11.78 16 6 O -0.58 -18.37 15.64 -3.03 -0.05 -18.42 16 7 C -0.13 -2.66 5.70 29.85 0.17 -2.49 16 8 C -0.10 -3.21 4.50 30.59 0.14 -3.07 16 9 C -0.10 -3.74 5.15 30.59 0.16 -3.59 16 10 C 0.02 0.93 4.97 29.85 0.15 1.08 16 11 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 12 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 13 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 14 N -0.94 -58.23 13.29 21.45 0.28 -57.94 16 15 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 19 C -0.03 -0.21 4.96 -19.87 -0.10 -0.31 16 20 C -0.10 -0.50 9.06 22.27 0.20 -0.30 16 21 C -0.05 -0.39 9.56 22.27 0.21 -0.18 16 22 C -0.06 -0.84 6.85 36.37 0.25 -0.59 16 23 N 0.03 0.58 4.45 -46.46 -0.21 0.37 16 24 O -0.19 -4.03 18.45 18.89 0.35 -3.68 16 25 O -0.18 -3.78 18.45 18.89 0.35 -3.44 16 26 C -0.05 -0.49 9.56 22.27 0.21 -0.28 16 27 C -0.10 -0.70 9.67 22.27 0.22 -0.48 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.42 2.03 6.85 -92.71 -0.64 1.39 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 35 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 39 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.18 -0.14 6.90 -2.91 -0.02 -0.16 16 42 H 0.17 1.00 7.61 -2.91 -0.02 0.98 16 43 H 0.16 1.28 7.61 -2.91 -0.02 1.26 16 44 H 0.17 0.53 8.04 -2.91 -0.02 0.51 16 Total: -1.00 -79.40 380.73 4.68 -74.73 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: 0.37 Total: 0.76 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 3.79 Total: -27.93 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -2.16 Total: -68.25 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: 0.65 Total: -25.54 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -79.40 4.68 -74.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928245411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.031 kcal (2) G-P(sol) polarization free energy of solvation -79.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds