Wall clock time and date at job start Tue Mar 31 2020 12:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 H 1.09002 * 110.71769 * 260.12351 * 4 2 1 6 6 N 1.46498 * 110.72439 * 23.22335 * 4 2 1 7 7 C 1.36936 * 119.99971 * 204.99916 * 6 4 2 8 8 H 1.07998 * 119.99870 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99839 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00003 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99917 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46814 * 89.99969 * 11 9 7 13 13 H 1.48496 * 109.47065 * 209.99588 * 11 9 7 14 14 H 1.48495 * 109.47155 * 330.00406 * 11 9 7 15 15 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 16 16 C 1.54904 * 101.57813 * 324.49251 * 15 4 2 17 17 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 18 18 C 1.34784 * 125.64833 * 61.52277 * 17 2 1 19 19 O 1.21691 * 119.99669 * 359.97438 * 18 17 2 20 20 C 1.46659 * 119.99794 * 180.02562 * 18 17 2 21 21 O 1.35393 * 126.11713 * 0.02670 * 20 18 17 22 22 C 1.34396 * 109.47305 * 179.97438 * 21 20 18 23 23 C 1.33902 * 108.56129 * 359.97438 * 22 21 20 24 24 C 1.35190 * 126.11595 * 179.71342 * 20 18 17 25 25 C 1.50729 * 130.57192 * 1.00024 * 24 20 18 26 26 C 1.53674 * 107.49970 * 163.70133 * 25 24 20 27 27 O 1.42905 * 109.97601 * 48.01004 * 26 25 24 28 28 C 1.43504 * 114.76709 * 287.61857 * 27 26 25 29 29 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 30 30 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 31 31 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 32 32 H 0.96998 * 119.99548 * 24.99809 * 6 4 2 33 33 H 0.96998 * 120.00036 * 180.02562 * 10 9 7 34 34 H 1.08991 * 111.00800 * 82.57191 * 15 4 2 35 35 H 1.09000 * 111.00097 * 206.38576 * 15 4 2 36 36 H 1.09002 * 110.36826 * 155.85543 * 16 15 4 37 37 H 1.09001 * 110.36870 * 278.06153 * 16 15 4 38 38 H 1.08002 * 125.72288 * 180.02562 * 22 21 20 39 39 H 1.09001 * 110.02260 * 44.08988 * 25 24 20 40 40 H 1.08997 * 109.69852 * 283.12689 * 25 24 20 41 41 H 1.09004 * 109.38884 * 287.86331 * 26 25 24 42 42 H 1.08998 * 109.38967 * 168.16908 * 26 25 24 43 43 H 1.09000 * 109.82445 * 291.96131 * 28 27 26 44 44 H 1.09000 * 109.87990 * 171.06238 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 2.3504 -0.0432 2.0211 6 7 1.0470 -1.6827 1.7501 7 6 1.0607 -2.0569 3.0673 8 1 1.8142 -1.6625 3.7329 9 6 0.1054 -2.9424 3.5472 10 7 -0.8138 -3.4218 2.7364 11 14 0.1237 -3.4523 5.3442 12 1 -0.7110 -2.5117 6.1341 13 1 -0.4222 -4.8272 5.4741 14 1 1.5185 -3.4232 5.8528 15 6 3.2901 -1.5101 0.6953 16 6 2.8196 -1.8769 -0.7342 17 7 2.0331 -0.7135 -1.1829 18 6 1.8112 -0.3627 -2.4652 19 8 1.1424 0.6216 -2.7197 20 6 2.3749 -1.1679 -3.5538 21 8 3.1317 -2.2817 -3.4133 22 6 3.4677 -2.7511 -4.6269 23 6 2.9333 -1.9495 -5.5569 24 6 2.2267 -0.9340 -4.8770 25 6 1.4995 0.1693 -5.6022 26 6 1.9976 0.1733 -7.0560 27 8 1.9786 -1.1552 -7.5822 28 6 2.9962 -2.0228 -7.0613 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0126 32 1 0.3701 -2.0366 1.1523 33 1 -1.4815 -4.0403 3.0718 34 1 4.1665 -0.8628 0.6642 35 1 3.4892 -2.4058 1.2836 36 1 3.6778 -2.0299 -1.3885 37 1 2.1972 -2.7715 -0.7109 38 1 4.0674 -3.6283 -4.8199 39 1 1.7158 1.1295 -5.1339 40 1 0.4265 -0.0207 -5.5789 41 1 3.0159 0.5607 -7.0886 42 1 1.3502 0.8104 -7.6585 43 1 3.9759 -1.6922 -7.4061 44 1 2.8147 -3.0461 -7.3899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986606630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:43 Heat of formation + Delta-G solvation = -38.175123 kcal Electronic energy + Delta-G solvation = -27698.141252 eV Core-core repulsion = 23810.995651 eV Total energy + Delta-G solvation = -3887.145602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.94447 -39.81388 -38.75435 -37.51101 -34.13681 -33.63949 -32.30970 -31.63042 -30.83659 -29.63628 -28.50709 -26.46021 -25.22633 -24.30033 -23.53789 -23.18873 -21.56768 -20.04572 -19.60859 -18.84143 -17.58067 -17.29101 -16.75936 -16.35789 -16.19577 -15.97849 -15.44913 -15.11621 -14.82576 -14.58292 -13.98749 -13.85527 -13.61174 -13.45550 -13.23309 -12.85904 -12.80407 -12.69389 -12.41118 -12.20241 -11.80352 -11.75667 -11.27249 -11.12837 -11.01105 -10.96723 -10.75553 -10.64935 -10.30589 -10.17948 -10.06941 -9.78944 -9.63784 -9.59246 -8.98306 -8.81629 -8.32821 -7.05683 -5.83779 -3.13726 1.03988 2.07542 2.60446 3.20121 3.28625 3.39469 3.44919 3.46562 3.52960 4.26296 4.40517 4.52635 4.64138 4.73776 4.95504 5.04008 5.04915 5.06974 5.16589 5.30280 5.41879 5.45726 5.56511 5.59236 5.63295 5.69463 5.75145 5.79265 5.85777 5.90731 6.01050 6.13529 6.18218 6.32581 6.39663 6.49302 6.58643 6.64192 6.74320 6.83345 6.89853 6.99559 7.64213 7.68953 8.20856 8.34213 9.45869 10.00596 10.35693 11.38355 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025351 B = 0.003006 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.244781 B = 9313.051904 C = 9618.461443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.126 3.874 3 H 0.074 0.926 4 C 0.172 3.828 5 H 0.072 0.928 6 N -0.713 5.713 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.159 4.159 16 C 0.105 3.895 17 N -0.596 5.596 18 C 0.610 3.390 19 O -0.525 6.525 20 C -0.050 4.050 21 O -0.159 6.159 22 C 0.008 3.992 23 C -0.240 4.240 24 C -0.092 4.092 25 C -0.085 4.085 26 C 0.063 3.937 27 O -0.380 6.380 28 C 0.137 3.863 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.388 0.612 33 H 0.256 0.744 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.210 0.790 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.716 4.080 -18.230 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.092 0.908 4 C 0.060 3.940 5 H 0.090 0.910 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.201 4.201 16 C -0.017 4.017 17 N -0.328 5.328 18 C 0.398 3.602 19 O -0.404 6.404 20 C -0.102 4.102 21 O -0.055 6.055 22 C -0.062 4.062 23 C -0.242 4.242 24 C -0.095 4.095 25 C -0.122 4.122 26 C -0.013 4.013 27 O -0.298 6.298 28 C 0.061 3.939 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.225 0.775 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.226 0.774 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.277 4.409 -18.063 21.245 hybrid contribution 0.038 -0.686 0.926 1.154 sum 10.315 3.722 -17.137 20.345 Atomic orbital electron populations 1.21931 0.93954 1.03100 1.01801 1.22097 0.95633 0.95654 0.84306 0.90816 1.21202 0.89098 0.91719 0.91977 0.91005 1.42561 1.32580 1.51503 1.08893 1.19235 1.10885 1.21401 0.86060 0.90989 1.24753 0.97885 1.00031 0.97922 1.69660 1.18298 1.35545 1.34232 0.86188 0.77450 0.77662 0.84830 1.21679 1.21819 1.20730 1.23535 0.99275 1.02464 0.94802 1.22415 0.94738 0.88396 0.96191 1.48539 1.50990 1.28687 1.04552 1.16136 0.80459 0.83445 0.80139 1.90830 1.40241 1.26608 1.82727 1.21499 1.02749 0.91001 0.94921 1.84489 1.54561 1.35511 1.30979 1.23638 1.01426 0.99907 0.81212 1.20974 1.05600 0.99117 0.98511 1.20131 0.99832 0.98281 0.91304 1.20853 1.00302 0.96787 0.94261 1.22699 1.01088 0.83755 0.93797 1.87976 1.54137 1.22375 1.65325 1.21008 0.91560 0.95335 0.86043 0.91202 0.92667 0.91507 0.77518 0.93390 0.91999 0.89271 0.90933 0.90882 0.77374 0.88492 0.89195 0.92885 0.88134 0.91672 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.50 37.16 0.32 -2.54 16 2 C 0.13 2.24 3.42 -66.95 -0.23 2.01 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.17 3.25 3.47 -66.09 -0.23 3.02 16 5 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 6 N -0.71 -16.81 4.56 -51.65 -0.24 -17.04 16 7 C -0.24 -6.43 9.96 -15.06 -0.15 -6.58 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 11 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 15 C -0.16 -2.61 6.78 -24.58 -0.17 -2.77 16 16 C 0.10 1.68 6.15 -2.53 -0.02 1.67 16 17 N -0.60 -10.19 3.07 -164.55 -0.51 -10.69 16 18 C 0.61 10.62 7.61 -12.86 -0.10 10.52 16 19 O -0.52 -9.97 14.68 5.20 0.08 -9.90 16 20 C -0.05 -0.77 6.91 -37.27 -0.26 -1.03 16 21 O -0.16 -2.15 7.91 2.35 0.02 -2.13 16 22 C 0.01 0.08 12.06 29.21 0.35 0.43 16 23 C -0.24 -2.68 6.04 -105.01 -0.63 -3.32 16 24 C -0.09 -1.27 6.02 -104.58 -0.63 -1.90 16 25 C -0.08 -1.03 5.70 -27.52 -0.16 -1.19 16 26 C 0.06 0.61 6.75 37.51 0.25 0.86 16 27 O -0.38 -4.18 10.70 -35.23 -0.38 -4.56 16 28 C 0.14 1.21 7.27 36.03 0.26 1.47 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.05 1.04 6.89 -51.93 -0.36 0.68 16 31 H 0.07 1.42 6.22 -51.93 -0.32 1.10 16 32 H 0.39 9.91 5.68 -40.82 -0.23 9.68 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.07 1.03 6.22 -51.93 -0.32 0.71 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.10 1.19 7.64 -51.93 -0.40 0.80 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -31.57 353.30 -7.72 -39.30 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.25 Total: 9.24 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.48 Total: 0.30 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.02 Total: -54.28 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.28 Total: -16.58 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.57 -7.72 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986606630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.122 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds