Wall clock time and date at job start Tue Mar 31 2020 12:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 H 1.09002 * 110.71769 * 260.12351 * 4 2 1 6 6 N 1.46498 * 110.72439 * 23.22335 * 4 2 1 7 7 C 1.36936 * 119.99971 * 204.99916 * 6 4 2 8 8 H 1.07998 * 119.99870 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99839 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00003 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99917 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46814 * 89.99969 * 11 9 7 13 13 H 1.48496 * 109.47065 * 209.99588 * 11 9 7 14 14 H 1.48495 * 109.47155 * 330.00406 * 11 9 7 15 15 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 16 16 C 1.54904 * 101.57813 * 324.49251 * 15 4 2 17 17 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 18 18 C 1.34784 * 125.64833 * 61.52277 * 17 2 1 19 19 O 1.21691 * 119.99669 * 359.97438 * 18 17 2 20 20 C 1.46659 * 119.99794 * 180.02562 * 18 17 2 21 21 O 1.35393 * 126.11713 * 0.02670 * 20 18 17 22 22 C 1.34396 * 109.47305 * 179.97438 * 21 20 18 23 23 C 1.33902 * 108.56129 * 359.97438 * 22 21 20 24 24 C 1.35190 * 126.11595 * 179.71342 * 20 18 17 25 25 C 1.50729 * 130.57192 * 1.00024 * 24 20 18 26 26 C 1.53674 * 107.49970 * 163.70133 * 25 24 20 27 27 O 1.42905 * 109.97601 * 48.01004 * 26 25 24 28 28 C 1.43504 * 114.76709 * 287.61857 * 27 26 25 29 29 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 30 30 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 31 31 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 32 32 H 0.96998 * 119.99548 * 24.99809 * 6 4 2 33 33 H 0.96998 * 120.00036 * 180.02562 * 10 9 7 34 34 H 1.08991 * 111.00800 * 82.57191 * 15 4 2 35 35 H 1.09000 * 111.00097 * 206.38576 * 15 4 2 36 36 H 1.09002 * 110.36826 * 155.85543 * 16 15 4 37 37 H 1.09001 * 110.36870 * 278.06153 * 16 15 4 38 38 H 1.08002 * 125.72288 * 180.02562 * 22 21 20 39 39 H 1.09001 * 110.02260 * 44.08988 * 25 24 20 40 40 H 1.08997 * 109.69852 * 283.12689 * 25 24 20 41 41 H 1.09004 * 109.38884 * 287.86331 * 26 25 24 42 42 H 1.08998 * 109.38967 * 168.16908 * 26 25 24 43 43 H 1.09000 * 109.82445 * 291.96131 * 28 27 26 44 44 H 1.09000 * 109.87990 * 171.06238 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 2.3504 -0.0432 2.0211 6 7 1.0470 -1.6827 1.7501 7 6 1.0607 -2.0569 3.0673 8 1 1.8142 -1.6625 3.7329 9 6 0.1054 -2.9424 3.5472 10 7 -0.8138 -3.4218 2.7364 11 14 0.1237 -3.4523 5.3442 12 1 -0.7110 -2.5117 6.1341 13 1 -0.4222 -4.8272 5.4741 14 1 1.5185 -3.4232 5.8528 15 6 3.2901 -1.5101 0.6953 16 6 2.8196 -1.8769 -0.7342 17 7 2.0331 -0.7135 -1.1829 18 6 1.8112 -0.3627 -2.4652 19 8 1.1424 0.6216 -2.7197 20 6 2.3749 -1.1679 -3.5538 21 8 3.1317 -2.2817 -3.4133 22 6 3.4677 -2.7511 -4.6269 23 6 2.9333 -1.9495 -5.5569 24 6 2.2267 -0.9340 -4.8770 25 6 1.4995 0.1693 -5.6022 26 6 1.9976 0.1733 -7.0560 27 8 1.9786 -1.1552 -7.5822 28 6 2.9962 -2.0228 -7.0613 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0126 32 1 0.3701 -2.0366 1.1523 33 1 -1.4815 -4.0403 3.0718 34 1 4.1665 -0.8628 0.6642 35 1 3.4892 -2.4058 1.2836 36 1 3.6778 -2.0299 -1.3885 37 1 2.1972 -2.7715 -0.7109 38 1 4.0674 -3.6283 -4.8199 39 1 1.7158 1.1295 -5.1339 40 1 0.4265 -0.0207 -5.5789 41 1 3.0159 0.5607 -7.0886 42 1 1.3502 0.8104 -7.6585 43 1 3.9759 -1.6922 -7.4061 44 1 2.8147 -3.0461 -7.3899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986606630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:42 Heat of formation + Delta-G solvation = -58.839792 kcal Electronic energy + Delta-G solvation = -27699.037340 eV Core-core repulsion = 23810.995651 eV Total energy + Delta-G solvation = -3888.041689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.89760 -41.19398 -39.55127 -38.93851 -35.83078 -34.65145 -33.55100 -32.97469 -32.29285 -31.05601 -29.82954 -27.22580 -26.78949 -25.69661 -25.10556 -24.22106 -22.79064 -21.23123 -20.67404 -20.11946 -19.40975 -18.51005 -17.89725 -17.38532 -17.31391 -17.03405 -16.44061 -16.27426 -16.08751 -15.85475 -15.71158 -15.37033 -14.81247 -14.53191 -14.47117 -14.27934 -14.10338 -13.87348 -13.65869 -13.30158 -13.24402 -12.97398 -12.89049 -12.60252 -12.58198 -12.36560 -12.27790 -12.06152 -11.90229 -11.72238 -11.48736 -11.30885 -10.93369 -10.80322 -10.51306 -9.91847 -9.55298 -9.01505 -7.92254 -5.21094 -0.02697 1.20240 1.49922 1.50882 1.53860 1.59114 1.98726 2.06850 2.57589 2.82344 3.32662 3.40365 3.45777 3.67122 3.75341 3.84368 3.90694 3.95501 4.18729 4.22099 4.23136 4.29614 4.33872 4.36669 4.50427 4.51607 4.67679 4.70965 4.77140 4.79842 4.83083 4.89257 4.97372 5.02610 5.05482 5.15450 5.24116 5.30677 5.33207 5.40324 5.56664 5.79439 6.14630 6.28547 6.35991 6.88374 7.35881 8.08627 8.32637 9.31106 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025351 B = 0.003006 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.244781 B = 9313.051904 C = 9618.461443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.131 3.869 3 H 0.090 0.910 4 C 0.165 3.835 5 H 0.081 0.919 6 N -0.725 5.725 7 C -0.235 4.235 8 H 0.083 0.917 9 C -0.074 4.074 10 N -0.970 5.970 11 Si 0.971 3.029 12 H -0.291 1.291 13 H -0.301 1.301 14 H -0.266 1.266 15 C -0.145 4.145 16 C 0.113 3.887 17 N -0.599 5.599 18 C 0.606 3.394 19 O -0.552 6.552 20 C -0.089 4.089 21 O -0.171 6.171 22 C 0.030 3.970 23 C -0.253 4.253 24 C -0.096 4.096 25 C -0.088 4.088 26 C 0.068 3.932 27 O -0.398 6.398 28 C 0.135 3.865 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.375 0.625 33 H 0.249 0.751 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.259 0.741 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.442 3.855 -19.464 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 H 0.108 0.892 4 C 0.054 3.946 5 H 0.099 0.901 6 N -0.366 5.366 7 C -0.366 4.366 8 H 0.101 0.899 9 C -0.266 4.266 10 N -0.621 5.621 11 Si 0.801 3.199 12 H -0.219 1.219 13 H -0.228 1.228 14 H -0.191 1.191 15 C -0.186 4.186 16 C -0.009 4.009 17 N -0.330 5.330 18 C 0.396 3.604 19 O -0.433 6.433 20 C -0.140 4.140 21 O -0.068 6.068 22 C -0.039 4.039 23 C -0.255 4.255 24 C -0.100 4.100 25 C -0.126 4.126 26 C -0.008 4.008 27 O -0.317 6.317 28 C 0.059 3.941 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.210 0.790 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.275 0.725 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.136 0.864 43 H 0.107 0.893 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.064 4.213 -19.301 23.685 hybrid contribution -0.748 -0.590 1.183 1.519 sum 12.315 3.624 -18.119 22.206 Atomic orbital electron populations 1.21770 0.95389 1.00997 1.01362 1.21975 0.94389 0.96432 0.84446 0.89215 1.21428 0.89084 0.91413 0.92633 0.90065 1.42701 1.33534 1.52301 1.08054 1.19648 1.09967 1.19828 0.87199 0.89908 1.25514 0.98285 1.01187 1.01654 1.69828 1.19461 1.36915 1.35915 0.85174 0.77891 0.76424 0.80447 1.21862 1.22828 1.19074 1.23391 0.98917 1.02065 0.94243 1.22348 0.94850 0.87138 0.96576 1.48550 1.51221 1.28840 1.04435 1.16454 0.80012 0.83412 0.80500 1.90796 1.41434 1.27893 1.83215 1.21110 1.05615 0.92661 0.94627 1.84444 1.54565 1.35029 1.32743 1.24644 0.99629 0.99983 0.79656 1.21337 1.05536 0.98519 1.00063 1.20550 0.99226 0.98921 0.91254 1.20904 0.99405 0.96109 0.96142 1.22744 1.02207 0.83827 0.92049 1.87954 1.55240 1.22973 1.65494 1.21320 0.92273 0.96304 0.84206 0.91695 0.92900 0.94325 0.79018 0.94250 0.88801 0.90339 0.88578 0.93234 0.72540 0.89270 0.90679 0.91460 0.86387 0.89276 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.50 71.98 0.61 -4.81 16 2 C 0.13 4.64 3.42 45.34 0.16 4.79 16 3 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 4 C 0.16 6.09 3.47 46.18 0.16 6.25 16 5 H 0.08 2.87 8.09 -2.39 -0.02 2.85 16 6 N -0.72 -34.60 4.56 -317.32 -1.45 -36.05 16 7 C -0.23 -12.31 9.96 84.03 0.84 -11.48 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 10 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 11 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 15 C -0.15 -4.51 6.78 31.99 0.22 -4.30 16 16 C 0.11 3.53 6.15 86.85 0.53 4.07 16 17 N -0.60 -20.46 3.07 -792.73 -2.43 -22.90 16 18 C 0.61 21.39 7.61 86.44 0.66 22.04 16 19 O -0.55 -21.60 14.68 -4.32 -0.06 -21.66 16 20 C -0.09 -2.70 6.91 23.77 0.16 -2.54 16 21 O -0.17 -4.31 7.91 -14.52 -0.11 -4.43 16 22 C 0.03 0.50 12.06 66.83 0.81 1.30 16 23 C -0.25 -4.98 6.04 -20.12 -0.12 -5.10 16 24 C -0.10 -2.57 6.02 -19.84 -0.12 -2.69 16 25 C -0.09 -2.14 5.70 30.08 0.17 -1.96 16 26 C 0.07 1.20 6.75 72.21 0.49 1.69 16 27 O -0.40 -7.83 10.70 -148.98 -1.59 -9.42 16 28 C 0.13 1.92 7.27 71.25 0.52 2.43 16 29 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.05 2.08 6.89 -2.39 -0.02 2.06 16 31 H 0.04 1.73 6.22 -2.39 -0.01 1.72 16 32 H 0.38 19.87 5.68 -92.71 -0.53 19.35 16 33 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.10 2.56 6.22 -2.39 -0.01 2.55 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.26 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.09 2.25 7.64 -2.39 -0.02 2.24 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 42 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -70.56 353.30 2.70 -67.85 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.50 Total: 31.80 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.55 Total: 6.04 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -3.60 Total: -117.29 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.77 Total: -35.51 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -70.56 2.70 -67.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986606630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.015 kcal (2) G-P(sol) polarization free energy of solvation -70.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds