Wall clock time and date at job start Tue Mar 31 2020 13:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49785 * 2 1 4 4 C 1.53189 * 109.52646 * 239.91604 * 2 1 3 5 5 N 1.46930 * 108.77782 * 185.39709 * 4 2 1 6 6 C 1.34777 * 120.62820 * 233.58635 * 5 4 2 7 7 O 1.21281 * 120.00317 * 355.64397 * 6 5 4 8 8 C 1.50699 * 119.99630 * 175.64417 * 6 5 4 9 9 C 1.52995 * 115.55399 * 76.54560 * 8 6 5 10 10 F 1.39900 * 109.47076 * 65.33682 * 9 8 6 11 11 F 1.39899 * 109.47414 * 185.34063 * 9 8 6 12 12 F 1.39900 * 109.47093 * 305.33684 * 9 8 6 13 13 C 1.53002 * 117.49848 * 290.87288 * 8 6 5 14 14 C 1.53008 * 117.49768 * 222.21692 * 8 6 5 15 15 C 1.46921 * 118.73775 * 53.61005 * 5 4 2 16 16 C 1.53192 * 108.77590 * 306.38888 * 15 5 4 17 17 C 1.53043 * 109.31082 * 54.64043 * 16 15 5 18 18 H 1.09003 * 109.45347 * 58.64242 * 17 16 15 19 19 N 1.46495 * 109.46080 * 178.61556 * 17 16 15 20 20 C 1.36939 * 120.00027 * 275.06662 * 19 17 16 21 21 H 1.08000 * 119.99556 * 359.97438 * 20 19 17 22 22 C 1.38809 * 120.00216 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00179 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99947 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46978 * 179.97438 * 24 22 20 26 26 H 1.48507 * 109.47087 * 299.99668 * 24 22 20 27 27 H 1.48496 * 109.47229 * 59.99710 * 24 22 20 28 28 H 1.08998 * 109.47026 * 299.93471 * 1 2 3 29 29 H 1.08990 * 109.47007 * 59.93937 * 1 2 3 30 30 H 1.09004 * 109.46792 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.59087 * 305.18375 * 4 2 1 32 32 H 1.08999 * 109.58703 * 65.60767 * 4 2 1 33 33 H 1.09007 * 117.49961 * 0.02562 * 13 8 6 34 34 H 1.08998 * 117.50178 * 145.01861 * 13 8 6 35 35 H 1.09001 * 117.49769 * 214.97908 * 14 8 6 36 36 H 1.09001 * 117.49425 * 359.97133 * 14 8 6 37 37 H 1.08998 * 109.58605 * 66.17826 * 15 5 4 38 38 H 1.08997 * 109.58553 * 186.60255 * 15 5 4 39 39 H 1.08998 * 109.50049 * 294.68637 * 16 15 5 40 40 H 1.09005 * 109.49469 * 174.58591 * 16 15 5 41 41 H 0.96999 * 120.00635 * 95.05967 * 19 17 16 42 42 H 0.96996 * 120.00623 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5054 -0.8284 -1.1689 6 6 4.2819 -0.3854 -2.1775 7 8 3.7732 0.0323 -3.1961 8 6 5.7824 -0.4092 -2.0395 9 6 6.4387 -1.7812 -2.2059 10 9 6.2556 -2.2296 -3.5184 11 9 7.8074 -1.6794 -1.9345 12 9 5.8534 -2.6891 -1.3170 13 6 6.4153 0.5600 -1.0389 14 6 6.5575 0.8104 -2.5423 15 6 4.1060 -1.4255 0.0317 16 6 3.5709 -0.6939 1.2667 17 6 2.0408 -0.7227 1.2486 18 1 1.6974 -1.7572 1.2354 19 7 1.5259 -0.0527 2.4453 20 6 1.3959 -0.7488 3.6173 21 1 1.6725 -1.7919 3.6593 22 6 0.9075 -0.1141 4.7511 23 7 0.5698 1.1570 4.6998 24 14 0.7294 -1.0639 6.3497 25 1 0.1910 -0.1652 7.4021 26 1 -0.2014 -2.2033 6.1474 27 1 2.0574 -1.5783 6.7704 28 1 -0.3633 0.5128 0.8906 29 1 -0.3633 0.5147 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6065 -1.7218 -1.2978 32 1 1.7644 -0.1581 -2.1388 33 1 5.7463 1.2145 -0.4802 34 1 7.2994 0.2203 -0.4995 35 1 7.5352 0.6353 -2.9914 36 1 5.9821 1.6297 -2.9733 37 1 3.8387 -2.4807 0.0877 38 1 5.1902 -1.3229 -0.0126 39 1 3.9155 0.3402 1.2547 40 1 3.9335 -1.1883 2.1679 41 1 1.2772 0.8841 2.4075 42 1 0.2289 1.6007 5.4921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036186947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:05 Heat of formation + Delta-G solvation = -146.290812 kcal Electronic energy + Delta-G solvation = -28961.156873 eV Core-core repulsion = 24527.466282 eV Total energy + Delta-G solvation = -4433.690590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.42222 -47.95774 -47.85829 -40.56809 -38.14354 -36.79567 -34.68147 -32.84799 -31.53650 -29.41214 -27.84498 -26.56352 -25.17906 -23.40566 -23.03339 -22.51803 -21.68271 -20.07075 -19.28093 -18.63447 -18.60300 -18.19580 -17.13164 -16.44950 -16.02752 -15.27628 -15.00776 -14.82004 -14.71839 -14.47038 -14.29603 -14.13755 -14.10167 -13.98041 -13.81669 -13.73640 -13.36136 -13.10631 -12.53856 -12.48246 -12.27513 -12.02445 -11.80438 -11.59487 -11.36046 -11.15140 -11.08291 -10.95701 -10.83335 -10.67400 -10.45661 -10.26038 -9.98646 -9.77326 -9.67033 -8.93838 -8.60520 -7.00807 -5.81227 -3.10144 1.99561 2.56548 2.64228 2.96265 3.40408 3.42032 3.45576 3.46163 3.72815 3.97802 4.07829 4.37759 4.41842 4.54357 4.97162 5.05484 5.15498 5.18036 5.21559 5.33080 5.41413 5.47985 5.59650 5.61431 5.63556 5.73018 5.88603 6.01413 6.10595 6.25287 6.30977 6.38362 6.44001 6.54847 6.76056 6.86413 6.99174 7.31186 7.65020 7.96351 8.36957 9.48535 10.05243 10.40188 11.41131 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.003665 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.375682 B = 7637.714367 C = 8235.137637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.591 5.591 6 C 0.556 3.444 7 O -0.527 6.527 8 C -0.239 4.239 9 C 0.498 3.502 10 F -0.172 7.172 11 F -0.176 7.176 12 F -0.170 7.170 13 C -0.131 4.131 14 C -0.115 4.115 15 C 0.102 3.898 16 C -0.152 4.152 17 C 0.183 3.817 18 H 0.049 0.951 19 N -0.720 5.720 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.292 1.292 26 H -0.286 1.286 27 H -0.286 1.286 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.248 -3.117 -14.353 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.322 5.322 6 C 0.341 3.659 7 O -0.404 6.404 8 C -0.243 4.243 9 C 0.444 3.556 10 F -0.154 7.154 11 F -0.157 7.157 12 F -0.151 7.151 13 C -0.168 4.168 14 C -0.153 4.153 15 C -0.021 4.021 16 C -0.193 4.193 17 C 0.073 3.927 18 H 0.067 0.933 19 N -0.360 5.360 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.213 1.213 27 H -0.213 1.213 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.218 0.782 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.934 -3.058 -14.725 19.199 hybrid contribution 0.001 -0.582 1.057 1.206 sum 11.934 -3.639 -13.669 18.507 Atomic orbital electron populations 1.21656 0.93922 1.01877 1.01925 1.21746 0.96725 0.99959 0.94484 0.91215 1.21811 0.77610 1.01273 0.99551 1.48098 1.07301 1.58895 1.17934 1.18681 0.85383 0.78455 0.83424 1.90708 1.74059 1.47116 1.28483 1.22498 0.95415 0.90794 1.15641 1.19043 0.76284 0.86069 0.74221 1.93228 1.94965 1.90516 1.36654 1.93182 1.32609 1.96256 1.93647 1.93222 1.83773 1.69918 1.68196 1.23370 1.02470 0.97964 0.93041 1.23192 1.00545 0.94624 0.96897 1.22178 0.98024 0.97568 0.84301 1.22721 1.00386 1.00300 0.95883 1.20205 0.90354 0.95779 0.86401 0.93335 1.42389 1.76478 1.11424 1.05723 1.19169 1.36087 0.94122 0.87709 0.91281 1.24713 1.01953 0.96000 0.98027 1.69640 1.49855 1.09510 1.29045 0.86307 0.77762 0.78742 0.83588 1.21743 1.21288 1.21311 0.90646 0.93776 0.92974 0.91152 0.89238 0.86070 0.86222 0.86623 0.86124 0.90965 0.90140 0.92191 0.90387 0.78216 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.03 37.16 0.34 -1.79 16 2 C -0.11 -1.72 2.46 -90.50 -0.22 -1.94 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.12 1.69 5.71 -3.71 -0.02 1.67 16 5 N -0.59 -8.19 2.97 -172.77 -0.51 -8.70 16 6 C 0.56 7.88 6.75 -10.99 -0.07 7.80 16 7 O -0.53 -8.95 16.38 5.56 0.09 -8.86 16 8 C -0.24 -2.65 1.05 -155.66 -0.16 -2.82 16 9 C 0.50 5.62 3.01 37.16 0.11 5.73 16 10 F -0.17 -2.17 17.29 2.25 0.04 -2.13 16 11 F -0.18 -1.77 15.90 2.25 0.04 -1.73 16 12 F -0.17 -2.01 13.66 2.25 0.03 -1.98 16 13 C -0.13 -1.13 8.52 -26.69 -0.23 -1.36 16 14 C -0.12 -1.00 9.58 -26.69 -0.26 -1.25 16 15 C 0.10 1.34 4.60 -3.71 -0.02 1.32 16 16 C -0.15 -2.41 5.66 -26.61 -0.15 -2.56 16 17 C 0.18 3.32 2.19 -67.89 -0.15 3.17 16 18 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 19 N -0.72 -16.69 4.41 -53.38 -0.24 -16.93 16 20 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 24 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.30 7.03 -51.93 -0.37 0.93 16 33 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.12 0.84 7.63 -51.93 -0.40 0.45 16 35 H 0.12 0.79 7.94 -51.93 -0.41 0.38 16 36 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 38 H 0.08 0.94 4.09 -51.93 -0.21 0.72 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.38 9.62 7.50 -40.82 -0.31 9.31 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -29.90 347.42 -6.53 -36.44 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.84 Total: 7.24 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.08 Total: 1.17 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.02 Total: -52.02 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.11 Total: -5.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.90 -6.53 -36.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036186947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.855 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds