Wall clock time and date at job start Tue Mar 31 2020 13:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49785 * 2 1 4 4 C 1.53189 * 109.52646 * 239.91604 * 2 1 3 5 5 N 1.46930 * 108.77782 * 185.39709 * 4 2 1 6 6 C 1.34777 * 120.62820 * 233.58635 * 5 4 2 7 7 O 1.21281 * 120.00317 * 355.64397 * 6 5 4 8 8 C 1.50699 * 119.99630 * 175.64417 * 6 5 4 9 9 C 1.52995 * 115.55399 * 76.54560 * 8 6 5 10 10 F 1.39900 * 109.47076 * 65.33682 * 9 8 6 11 11 F 1.39899 * 109.47414 * 185.34063 * 9 8 6 12 12 F 1.39900 * 109.47093 * 305.33684 * 9 8 6 13 13 C 1.53002 * 117.49848 * 290.87288 * 8 6 5 14 14 C 1.53008 * 117.49768 * 222.21692 * 8 6 5 15 15 C 1.46921 * 118.73775 * 53.61005 * 5 4 2 16 16 C 1.53192 * 108.77590 * 306.38888 * 15 5 4 17 17 C 1.53043 * 109.31082 * 54.64043 * 16 15 5 18 18 H 1.09003 * 109.45347 * 58.64242 * 17 16 15 19 19 N 1.46495 * 109.46080 * 178.61556 * 17 16 15 20 20 C 1.36939 * 120.00027 * 275.06662 * 19 17 16 21 21 H 1.08000 * 119.99556 * 359.97438 * 20 19 17 22 22 C 1.38809 * 120.00216 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00179 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99947 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46978 * 179.97438 * 24 22 20 26 26 H 1.48507 * 109.47087 * 299.99668 * 24 22 20 27 27 H 1.48496 * 109.47229 * 59.99710 * 24 22 20 28 28 H 1.08998 * 109.47026 * 299.93471 * 1 2 3 29 29 H 1.08990 * 109.47007 * 59.93937 * 1 2 3 30 30 H 1.09004 * 109.46792 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.59087 * 305.18375 * 4 2 1 32 32 H 1.08999 * 109.58703 * 65.60767 * 4 2 1 33 33 H 1.09007 * 117.49961 * 0.02562 * 13 8 6 34 34 H 1.08998 * 117.50178 * 145.01861 * 13 8 6 35 35 H 1.09001 * 117.49769 * 214.97908 * 14 8 6 36 36 H 1.09001 * 117.49425 * 359.97133 * 14 8 6 37 37 H 1.08998 * 109.58605 * 66.17826 * 15 5 4 38 38 H 1.08997 * 109.58553 * 186.60255 * 15 5 4 39 39 H 1.08998 * 109.50049 * 294.68637 * 16 15 5 40 40 H 1.09005 * 109.49469 * 174.58591 * 16 15 5 41 41 H 0.96999 * 120.00635 * 95.05967 * 19 17 16 42 42 H 0.96996 * 120.00623 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5054 -0.8284 -1.1689 6 6 4.2819 -0.3854 -2.1775 7 8 3.7732 0.0323 -3.1961 8 6 5.7824 -0.4092 -2.0395 9 6 6.4387 -1.7812 -2.2059 10 9 6.2556 -2.2296 -3.5184 11 9 7.8074 -1.6794 -1.9345 12 9 5.8534 -2.6891 -1.3170 13 6 6.4153 0.5600 -1.0389 14 6 6.5575 0.8104 -2.5423 15 6 4.1060 -1.4255 0.0317 16 6 3.5709 -0.6939 1.2667 17 6 2.0408 -0.7227 1.2486 18 1 1.6974 -1.7572 1.2354 19 7 1.5259 -0.0527 2.4453 20 6 1.3959 -0.7488 3.6173 21 1 1.6725 -1.7919 3.6593 22 6 0.9075 -0.1141 4.7511 23 7 0.5698 1.1570 4.6998 24 14 0.7294 -1.0639 6.3497 25 1 0.1910 -0.1652 7.4021 26 1 -0.2014 -2.2033 6.1474 27 1 2.0574 -1.5783 6.7704 28 1 -0.3633 0.5128 0.8906 29 1 -0.3633 0.5147 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6065 -1.7218 -1.2978 32 1 1.7644 -0.1581 -2.1388 33 1 5.7463 1.2145 -0.4802 34 1 7.2994 0.2203 -0.4995 35 1 7.5352 0.6353 -2.9914 36 1 5.9821 1.6297 -2.9733 37 1 3.8387 -2.4807 0.0877 38 1 5.1902 -1.3229 -0.0126 39 1 3.9155 0.3402 1.2547 40 1 3.9335 -1.1883 2.1679 41 1 1.2772 0.8841 2.4075 42 1 0.2289 1.6007 5.4921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036186947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:04 Heat of formation + Delta-G solvation = -163.491636 kcal Electronic energy + Delta-G solvation = -28961.902756 eV Core-core repulsion = 24527.466282 eV Total energy + Delta-G solvation = -4434.436474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.29011 -48.81027 -48.75224 -41.66421 -39.37690 -37.75156 -36.22132 -34.40906 -33.06873 -31.07488 -28.78162 -27.70082 -26.75909 -24.87239 -23.72192 -23.66233 -23.07330 -21.30176 -20.39401 -19.59529 -19.48176 -19.17296 -19.00960 -17.58624 -16.98160 -16.77112 -16.20080 -15.98987 -15.66021 -15.63174 -15.41003 -15.32372 -15.16983 -14.99126 -14.95798 -14.88185 -14.71970 -14.36901 -13.99239 -13.62044 -13.47516 -13.10863 -12.98585 -12.81060 -12.71100 -12.65445 -12.51862 -12.18815 -12.08969 -11.94155 -11.91934 -11.84287 -11.64999 -11.15912 -11.10227 -10.81222 -9.80370 -8.94684 -7.89443 -5.16691 1.00626 1.50515 1.51801 1.57722 1.60058 1.71713 2.11682 2.58015 2.59616 2.81530 3.16166 3.19516 3.43865 3.55652 3.62308 3.78131 3.80463 3.98311 4.05925 4.26959 4.34016 4.39274 4.48151 4.53783 4.64839 4.74678 4.76908 4.79487 4.81106 4.95331 4.96940 5.01167 5.16124 5.27406 5.40137 5.48229 5.56654 5.61302 6.19305 6.32070 6.85667 7.39200 8.14933 8.38258 9.33735 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.003665 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.375682 B = 7637.714367 C = 8235.137637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 H 0.059 0.941 4 C 0.125 3.875 5 N -0.593 5.593 6 C 0.554 3.446 7 O -0.559 6.559 8 C -0.259 4.259 9 C 0.502 3.498 10 F -0.182 7.182 11 F -0.166 7.166 12 F -0.174 7.174 13 C -0.118 4.118 14 C -0.104 4.104 15 C 0.112 3.888 16 C -0.141 4.141 17 C 0.178 3.822 18 H 0.045 0.955 19 N -0.730 5.730 20 C -0.232 4.232 21 H 0.076 0.924 22 C -0.072 4.072 23 N -0.969 5.969 24 Si 0.965 3.035 25 H -0.300 1.300 26 H -0.281 1.281 27 H -0.278 1.278 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.372 0.628 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.895 -4.128 -15.036 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 H 0.078 0.922 4 C 0.003 3.997 5 N -0.324 5.324 6 C 0.341 3.659 7 O -0.438 6.438 8 C -0.264 4.264 9 C 0.447 3.553 10 F -0.164 7.164 11 F -0.147 7.147 12 F -0.156 7.156 13 C -0.155 4.155 14 C -0.141 4.141 15 C -0.010 4.010 16 C -0.181 4.181 17 C 0.069 3.931 18 H 0.063 0.937 19 N -0.369 5.369 20 C -0.364 4.364 21 H 0.094 0.906 22 C -0.265 4.265 23 N -0.620 5.620 24 Si 0.795 3.205 25 H -0.227 1.227 26 H -0.207 1.207 27 H -0.205 1.205 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.204 0.796 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.614 -4.115 -15.434 20.988 hybrid contribution -0.497 -0.282 1.179 1.310 sum 13.117 -4.397 -14.255 19.865 Atomic orbital electron populations 1.21576 0.93872 1.02001 1.01360 1.21595 0.96716 0.99276 0.94181 0.92220 1.21707 0.78145 1.01634 0.98236 1.48154 1.07196 1.58815 1.18188 1.19117 0.86684 0.77374 0.82727 1.90689 1.75072 1.48387 1.29632 1.22440 0.93475 0.91689 1.18756 1.19002 0.76678 0.85846 0.73737 1.93211 1.95071 1.90651 1.37429 1.93201 1.31761 1.96191 1.93529 1.93207 1.83937 1.70152 1.68275 1.23511 1.02515 0.96291 0.93144 1.23355 1.00876 0.92868 0.97033 1.22129 0.99019 0.97311 0.82550 1.22496 0.98257 1.00407 0.96979 1.20427 0.91786 0.95257 0.85582 0.93725 1.42543 1.76861 1.10904 1.06566 1.19536 1.33882 0.94394 0.88542 0.90646 1.25423 1.03089 0.96849 1.01097 1.69795 1.51906 1.11046 1.29301 0.85337 0.77871 0.77381 0.79925 1.22695 1.20715 1.20454 0.93894 0.91580 0.92484 0.89911 0.89300 0.86479 0.84107 0.84445 0.86494 0.90201 0.88105 0.92621 0.91399 0.79633 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.03 71.98 0.65 -3.39 16 2 C -0.10 -3.02 2.46 -10.71 -0.03 -3.04 16 3 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 4 C 0.13 3.36 5.71 86.36 0.49 3.85 16 5 N -0.59 -15.44 2.97 -818.92 -2.43 -17.88 16 6 C 0.55 14.83 6.75 87.66 0.59 15.42 16 7 O -0.56 -18.42 16.38 -3.03 -0.05 -18.47 16 8 C -0.26 -5.16 1.05 -52.93 -0.06 -5.21 16 9 C 0.50 10.09 3.01 71.98 0.22 10.31 16 10 F -0.18 -4.26 17.29 44.97 0.78 -3.48 16 11 F -0.17 -2.82 15.90 44.97 0.72 -2.11 16 12 F -0.17 -3.70 13.66 44.97 0.61 -3.09 16 13 C -0.12 -1.69 8.52 30.62 0.26 -1.43 16 14 C -0.10 -1.52 9.58 30.62 0.29 -1.23 16 15 C 0.11 2.72 4.60 86.36 0.40 3.12 16 16 C -0.14 -4.29 5.66 30.67 0.17 -4.12 16 17 C 0.18 6.36 2.19 45.02 0.10 6.46 16 18 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 19 N -0.73 -34.14 4.41 -322.80 -1.42 -35.57 16 20 C -0.23 -12.11 9.93 84.03 0.83 -11.27 16 21 H 0.08 3.78 7.83 -2.91 -0.02 3.75 16 22 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 23 N -0.97 -57.59 13.06 21.65 0.28 -57.31 16 24 Si 0.96 44.76 29.55 68.60 2.03 46.78 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 H 0.04 1.61 7.36 -2.39 -0.02 1.59 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.09 2.46 7.03 -2.39 -0.02 2.44 16 33 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.14 1.45 7.63 -2.39 -0.02 1.43 16 35 H 0.14 1.41 7.94 -2.39 -0.02 1.39 16 36 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 1.87 8.00 -2.39 -0.02 1.85 16 38 H 0.10 2.07 4.09 -2.39 -0.01 2.06 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.37 19.11 7.50 -92.71 -0.70 18.41 16 42 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -64.39 347.42 5.26 -59.13 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.36 Total: 26.05 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 4.39 Total: 5.94 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.57 Total: -110.76 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.05 Total: -18.47 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 2.11 Total: -8.68 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.39 5.26 -59.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036186947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.361 kcal (2) G-P(sol) polarization free energy of solvation -64.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds