Wall clock time and date at job start Tue Mar 31 2020 13:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.49890 * 2 1 4 4 C 1.53188 * 109.49810 * 120.09976 * 2 1 3 5 5 N 1.46921 * 108.77691 * 174.58121 * 4 2 1 6 6 C 1.34779 * 120.62820 * 126.43640 * 5 4 2 7 7 O 1.21286 * 120.00147 * 175.00639 * 6 5 4 8 8 C 1.50703 * 120.00132 * 355.00071 * 6 5 4 9 9 C 1.52995 * 115.54954 * 276.82752 * 8 6 5 10 10 F 1.39899 * 109.46978 * 65.00693 * 9 8 6 11 11 F 1.39901 * 109.47197 * 185.00335 * 9 8 6 12 12 F 1.39896 * 109.47440 * 305.00612 * 9 8 6 13 13 C 1.52996 * 117.49720 * 131.11941 * 8 6 5 14 14 C 1.52995 * 60.00171 * 252.51499 * 13 8 6 15 15 C 1.46931 * 118.77038 * 306.41528 * 5 4 2 16 16 C 1.53189 * 108.76892 * 53.55071 * 15 5 4 17 17 C 1.53038 * 109.49561 * 239.93651 * 2 1 3 18 18 H 1.09001 * 109.46345 * 58.66295 * 17 2 1 19 19 N 1.46503 * 109.45172 * 298.70115 * 17 2 1 20 20 C 1.36931 * 120.00140 * 154.94084 * 19 17 2 21 21 H 1.07993 * 120.00335 * 359.97438 * 20 19 17 22 22 C 1.38816 * 119.99941 * 179.97438 * 20 19 17 23 23 N 1.31623 * 119.99739 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47049 * 59.99750 * 24 22 20 26 26 H 1.48493 * 109.47049 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46675 * 299.99941 * 24 22 20 28 28 H 1.09000 * 109.47835 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46900 * 300.06366 * 1 2 3 30 30 H 1.09006 * 109.47288 * 60.05615 * 1 2 3 31 31 H 1.09000 * 109.58911 * 294.37662 * 4 2 1 32 32 H 1.09007 * 109.58816 * 54.79467 * 4 2 1 33 33 H 1.08999 * 117.50174 * 0.02562 * 13 8 6 34 34 H 1.09003 * 117.49558 * 145.01970 * 13 8 6 35 35 H 1.09001 * 117.49942 * 252.51795 * 14 13 8 36 36 H 1.08991 * 117.52345 * 107.48072 * 14 13 8 37 37 H 1.09000 * 109.56042 * 293.78596 * 15 5 4 38 38 H 1.08991 * 109.62114 * 173.35733 * 15 5 4 39 39 H 1.09006 * 109.49655 * 185.44756 * 16 15 5 40 40 H 1.09000 * 109.50149 * 65.38987 * 16 15 5 41 41 H 0.97005 * 119.99642 * 334.93369 * 19 17 2 42 42 H 0.97005 * 119.99900 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5045 -0.8296 1.1692 6 6 4.2810 -0.3876 2.1783 7 8 5.4807 -0.5617 2.1413 8 6 3.6586 0.3230 3.3525 9 6 3.3922 1.8165 3.1543 10 9 2.4309 1.9897 2.1527 11 9 2.9236 2.3694 4.3509 12 9 4.5782 2.4559 2.7780 13 6 4.0583 -0.1439 4.7536 14 6 2.6650 -0.4645 4.2089 15 6 4.1059 -1.4263 -0.0313 16 6 3.5708 -0.6947 -1.2662 17 6 2.0407 -0.7227 -1.2486 18 1 1.6581 -0.2239 -2.1390 19 7 1.5781 -2.1127 -1.2312 20 6 1.4466 -2.8052 -2.4051 21 1 1.6835 -2.3267 -3.3438 22 6 1.0089 -4.1225 -2.3886 23 7 0.7207 -4.7058 -1.2444 24 14 0.8288 -5.0671 -3.9901 25 1 2.1444 -5.1348 -4.6754 26 1 0.3498 -6.4428 -3.7021 27 1 -0.1504 -4.3745 -4.8657 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5148 0.8895 30 1 -0.3634 0.5130 -0.8905 31 1 1.7637 -0.1587 2.1388 32 1 1.6051 -1.7220 1.2975 33 1 4.7717 -0.9648 4.8261 34 1 4.1316 0.6130 5.5345 35 1 1.8215 0.0817 4.6314 36 1 2.4611 -1.4962 3.9228 37 1 3.8385 -2.4815 -0.0873 38 1 5.1900 -1.3238 0.0130 39 1 3.9334 -1.1891 -2.1675 40 1 3.9159 0.3392 -1.2546 41 1 1.3651 -2.5424 -0.3880 42 1 0.4151 -5.6264 -1.2328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036186950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:10 Heat of formation + Delta-G solvation = -162.334382 kcal Electronic energy + Delta-G solvation = -29615.472843 eV Core-core repulsion = 25181.086551 eV Total energy + Delta-G solvation = -4434.386291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.23637 -48.74754 -48.71474 -41.70413 -39.48374 -37.80398 -35.88587 -34.26217 -33.15387 -31.09232 -28.51235 -27.60357 -26.67933 -25.58323 -24.12909 -23.74861 -22.63243 -20.99879 -20.16965 -19.49058 -19.43563 -19.26378 -18.88106 -17.59237 -16.97834 -16.65576 -16.08417 -15.93752 -15.88419 -15.57676 -15.55486 -15.26660 -15.13254 -14.95394 -14.88918 -14.78700 -14.64599 -14.31910 -14.27792 -13.65318 -13.41843 -13.12154 -12.95437 -12.83221 -12.67143 -12.61916 -12.43870 -12.17384 -12.01061 -11.96904 -11.91387 -11.80154 -11.58156 -11.31938 -10.91596 -10.82988 -9.72098 -8.91709 -7.88476 -5.13704 1.00953 1.50611 1.51219 1.56834 1.65771 1.74208 2.11899 2.59698 2.60583 2.85792 3.15574 3.21881 3.45451 3.58572 3.64157 3.77460 3.89877 4.07781 4.09401 4.28143 4.36559 4.41034 4.48659 4.53716 4.56931 4.70203 4.77718 4.84532 4.95875 4.96925 5.06443 5.13101 5.16021 5.24166 5.32373 5.48173 5.58275 5.63852 6.26824 6.34060 6.88300 7.42303 8.17205 8.42318 9.34444 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.004029 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.982264 B = 6947.307170 C = 7125.171055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.588 5.588 6 C 0.551 3.449 7 O -0.565 6.565 8 C -0.260 4.260 9 C 0.504 3.496 10 F -0.172 7.172 11 F -0.164 7.164 12 F -0.185 7.185 13 C -0.105 4.105 14 C -0.119 4.119 15 C 0.127 3.873 16 C -0.141 4.141 17 C 0.173 3.827 18 H 0.047 0.953 19 N -0.721 5.721 20 C -0.230 4.230 21 H 0.071 0.929 22 C -0.068 4.068 23 N -0.966 5.966 24 Si 0.961 3.039 25 H -0.284 1.284 26 H -0.300 1.300 27 H -0.281 1.281 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.376 0.624 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 13.788 13.312 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.318 5.318 6 C 0.338 3.662 7 O -0.444 6.444 8 C -0.265 4.265 9 C 0.450 3.550 10 F -0.153 7.153 11 F -0.146 7.146 12 F -0.167 7.167 13 C -0.142 4.142 14 C -0.156 4.156 15 C 0.005 3.995 16 C -0.181 4.181 17 C 0.064 3.936 18 H 0.065 0.935 19 N -0.362 5.362 20 C -0.362 4.362 21 H 0.089 0.911 22 C -0.261 4.261 23 N -0.617 5.617 24 Si 0.791 3.209 25 H -0.211 1.211 26 H -0.227 1.227 27 H -0.208 1.208 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.210 0.790 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.525 13.684 13.071 19.091 hybrid contribution -0.028 -0.839 -1.149 1.423 sum 2.497 12.845 11.921 17.701 Atomic orbital electron populations 1.21595 0.93336 1.01781 1.02087 1.21644 0.97103 0.99251 0.94074 0.89766 1.22001 0.77596 1.01293 0.99818 1.48100 1.07900 1.58522 1.17279 1.19211 0.85863 0.78713 0.82412 1.90678 1.15875 1.58820 1.79016 1.22393 1.15596 0.91542 0.96954 1.18911 0.74003 0.87865 0.74248 1.93217 1.64277 1.96121 1.61713 1.93195 1.88612 1.87060 1.45690 1.93206 1.47913 1.84069 1.91489 1.23376 0.98496 1.03689 0.88667 1.23570 0.94478 1.01397 0.96141 1.21383 0.97572 0.96981 0.83539 1.22407 0.99353 0.99555 0.96834 1.20425 0.91255 0.85501 0.96429 0.93473 1.42506 1.78961 1.09117 1.05602 1.19501 1.34982 0.94008 0.87698 0.91088 1.25314 1.03493 0.98246 0.98998 1.69766 1.53752 1.12868 1.25305 0.85401 0.77654 0.77561 0.80255 1.21100 1.22652 1.20764 0.93751 0.90786 0.92670 0.87444 0.91745 0.86737 0.84220 0.83627 0.86164 0.92468 0.90701 0.91869 0.91581 0.79013 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.05 71.98 0.65 -2.97 16 2 C -0.10 -2.95 2.52 -10.72 -0.03 -2.97 16 3 H 0.08 2.28 7.17 -2.39 -0.02 2.26 16 4 C 0.11 3.21 4.22 86.36 0.36 3.57 16 5 N -0.59 -18.36 2.97 -818.91 -2.43 -20.79 16 6 C 0.55 16.90 6.65 87.66 0.58 17.49 16 7 O -0.56 -21.25 16.47 -3.05 -0.05 -21.30 16 8 C -0.26 -5.70 1.10 -52.93 -0.06 -5.76 16 9 C 0.50 11.08 3.06 71.98 0.22 11.30 16 10 F -0.17 -3.90 14.26 44.97 0.64 -3.26 16 11 F -0.16 -2.96 15.90 44.97 0.72 -2.24 16 12 F -0.19 -4.90 17.13 44.97 0.77 -4.13 16 13 C -0.11 -1.66 9.61 30.59 0.29 -1.37 16 14 C -0.12 -1.76 7.68 30.59 0.24 -1.52 16 15 C 0.13 4.55 6.16 86.36 0.53 5.09 16 16 C -0.14 -4.86 5.78 30.67 0.18 -4.69 16 17 C 0.17 6.26 2.53 45.02 0.11 6.38 16 18 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 19 N -0.72 -32.59 3.64 -322.81 -1.18 -33.76 16 20 C -0.23 -11.91 9.93 84.04 0.83 -11.07 16 21 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 22 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 23 N -0.97 -56.10 13.06 21.65 0.28 -55.82 16 24 Si 0.96 44.92 29.55 68.60 2.03 46.95 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.11 2.37 3.93 -2.39 -0.01 2.36 16 32 H 0.06 2.06 6.64 -2.38 -0.02 2.05 16 33 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.14 1.56 7.64 -2.39 -0.02 1.54 16 35 H 0.15 1.39 7.93 -2.39 -0.02 1.37 16 36 H 0.12 1.87 8.02 -2.39 -0.02 1.85 16 37 H 0.06 2.36 7.74 -2.39 -0.02 2.35 16 38 H 0.07 2.72 7.04 -2.39 -0.02 2.70 16 39 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.38 18.14 5.92 -92.70 -0.55 17.59 16 42 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -64.08 342.58 5.67 -58.41 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.51 Total: 25.73 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 4.39 Total: 10.23 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -3.33 Total: -110.37 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.30 kcal Atomic # 9 Polarization: -11.76 SS G_CDS: 2.13 Total: -9.63 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.08 5.67 -58.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036186950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.929 kcal (2) G-P(sol) polarization free energy of solvation -64.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds