Wall clock time and date at job start Tue Mar 31 2020 13:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46864 * 2 1 4 4 C 1.50697 * 109.47361 * 120.00277 * 2 1 3 5 5 O 1.21281 * 120.00007 * 119.99344 * 4 2 1 6 6 N 1.34779 * 119.99789 * 300.00197 * 4 2 1 7 7 C 1.46497 * 119.99721 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.97604 * 37.69236 * 7 6 4 9 9 C 1.55021 * 111.10557 * 273.54346 * 7 6 4 10 10 O 1.43912 * 105.17972 * 206.02899 * 9 7 6 11 11 C 1.42402 * 109.55569 * 24.29758 * 10 9 7 12 12 C 1.52697 * 116.14175 * 129.84377 * 11 10 9 13 13 N 1.47219 * 87.79736 * 90.69826 * 12 11 10 14 14 C 1.36935 * 135.97407 * 206.45759 * 13 12 11 15 15 H 1.07995 * 120.00083 * 6.48300 * 14 13 12 16 16 C 1.38817 * 119.99741 * 186.48632 * 14 13 12 17 17 N 1.31621 * 119.99777 * 6.41211 * 16 14 13 18 18 Si 1.86796 * 119.99659 * 186.41024 * 16 14 13 19 19 H 1.48494 * 109.47314 * 84.99017 * 18 16 14 20 20 H 1.48507 * 109.46943 * 204.98927 * 18 16 14 21 21 H 1.48495 * 109.47489 * 324.98593 * 18 16 14 22 22 C 1.47209 * 88.04832 * 26.71385 * 13 12 11 23 23 C 1.53651 * 108.53393 * 358.08024 * 11 10 9 24 24 C 1.50699 * 109.46953 * 240.00259 * 2 1 3 25 25 C 1.34512 * 125.78746 * 119.71646 * 24 2 1 26 26 C 1.41391 * 106.84092 * 179.89175 * 25 24 2 27 27 C 1.34515 * 106.83818 * 0.36932 * 26 25 24 28 28 O 1.34304 * 125.79051 * 300.02287 * 24 2 1 29 29 H 1.09003 * 109.47594 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47253 * 299.99604 * 1 2 3 31 31 H 1.09006 * 109.47435 * 59.99759 * 1 2 3 32 32 H 0.97002 * 120.00077 * 359.97438 * 6 4 2 33 33 H 1.08999 * 110.30044 * 87.10618 * 9 7 6 34 34 H 1.08990 * 110.38487 * 324.99645 * 9 7 6 35 35 H 1.09002 * 113.49773 * 335.97102 * 12 11 10 36 36 H 1.09000 * 113.56066 * 205.44246 * 12 11 10 37 37 H 0.96998 * 119.99574 * 180.02562 * 17 16 14 38 38 H 1.08998 * 113.50414 * 88.02132 * 22 13 12 39 39 H 1.09006 * 113.49869 * 218.55501 * 22 13 12 40 40 H 1.09003 * 110.92717 * 97.30122 * 23 11 10 41 41 H 1.08998 * 110.93473 * 220.96481 * 23 11 10 42 42 H 1.07998 * 126.58611 * 0.02562 * 25 24 2 43 43 H 1.07992 * 126.58121 * 180.16758 * 26 25 24 44 44 H 1.07998 * 125.78850 * 179.75730 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7067 -0.2500 2.4545 7 6 2.1947 -0.9410 3.6506 8 1 3.2124 -1.3029 3.5043 9 6 1.2438 -2.0968 4.0545 10 8 1.4363 -2.2658 5.4706 11 6 1.9194 -1.0506 6.0343 12 6 1.1767 -0.5383 7.2662 13 7 2.1258 -1.3072 8.0880 14 6 2.1087 -1.8885 9.3278 15 1 1.1921 -1.9171 9.8981 16 6 3.2696 -2.4407 9.8514 17 7 4.4126 -2.2956 9.2151 18 14 3.2096 -3.3899 11.4592 19 1 2.8306 -4.7997 11.1879 20 1 4.5457 -3.3522 12.1064 21 1 2.2050 -2.7721 12.3615 22 6 3.1034 -1.1719 6.9958 23 6 2.0998 -0.0256 4.9039 24 6 2.0323 -0.7104 -1.2305 25 6 2.8044 -0.1703 -2.1904 26 6 3.0377 -1.1846 -3.1475 27 6 2.3873 -2.2814 -2.7192 28 8 1.7801 -1.9883 -1.5576 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.1493 0.5388 2.5436 33 1 1.5130 -3.0106 3.5246 34 1 0.2089 -1.8286 3.8429 35 1 0.1503 -0.8987 7.3359 36 1 1.2554 0.5399 7.4054 37 1 5.2237 -2.6818 9.5808 38 1 3.7051 -0.2653 7.0608 39 1 3.7044 -2.0673 6.8370 40 1 1.2368 0.6370 4.8377 41 1 3.0182 0.5457 5.0391 42 1 3.1768 0.8429 -2.2229 43 1 3.6227 -1.0949 -4.0507 44 1 2.3581 -3.2358 -3.2239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053923360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:32 Heat of formation + Delta-G solvation = 3.842069 kcal Electronic energy + Delta-G solvation = -26798.905041 eV Core-core repulsion = 22913.581442 eV Total energy + Delta-G solvation = -3885.323599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.78124 -40.39720 -39.33994 -36.34520 -34.72091 -34.35366 -33.04806 -32.10940 -30.45285 -28.82640 -28.07506 -25.71448 -24.99769 -24.76125 -22.51381 -21.96300 -21.64609 -20.99156 -20.11759 -19.05996 -17.86558 -17.30027 -16.69589 -16.45194 -16.01653 -15.39973 -15.35646 -15.17762 -14.64711 -14.53622 -14.23795 -13.73967 -13.58740 -13.35284 -13.16471 -13.05600 -13.00756 -12.88681 -12.74717 -12.06763 -12.00033 -11.94023 -11.82258 -11.51392 -11.18220 -11.12713 -10.78735 -10.46991 -10.21189 -10.11813 -10.00229 -9.81870 -9.46410 -9.17746 -8.77395 -8.68227 -8.63866 -6.85336 -5.73654 -3.03809 1.51873 2.37661 2.40415 2.75496 2.95253 3.43905 3.48166 3.49745 4.16071 4.17913 4.32447 4.49688 4.55188 4.60484 4.71167 4.85369 4.93076 4.99733 5.04777 5.17565 5.25135 5.27032 5.30251 5.42254 5.58858 5.62328 5.64223 5.69993 5.82942 5.87285 5.89582 5.98108 6.05534 6.27720 6.29408 6.39240 6.55089 6.62370 6.95067 6.96101 7.19545 7.26391 7.53960 7.77172 8.00567 8.01508 9.07638 9.74510 10.67467 11.45557 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032121 B = 0.002354 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.490037 B =11890.436494 C =12212.546774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.029 4.029 3 H 0.126 0.874 4 C 0.515 3.485 5 O -0.520 6.520 6 N -0.716 5.716 7 C 0.112 3.888 8 H 0.107 0.893 9 C 0.042 3.958 10 O -0.333 6.333 11 C 0.056 3.944 12 C 0.112 3.888 13 N -0.602 5.602 14 C -0.215 4.215 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.914 3.086 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.160 3.840 23 C -0.141 4.141 24 C 0.012 3.988 25 C -0.207 4.207 26 C -0.217 4.217 27 C -0.036 4.036 28 O -0.160 6.160 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.402 0.598 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.254 0.746 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 8.861 -24.871 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 H 0.144 0.856 4 C 0.300 3.700 5 O -0.394 6.394 6 N -0.369 5.369 7 C 0.008 3.992 8 H 0.125 0.875 9 C -0.037 4.037 10 O -0.251 6.251 11 C 0.015 3.985 12 C -0.015 4.015 13 N -0.327 5.327 14 C -0.343 4.343 15 H 0.099 0.901 16 C -0.205 4.205 17 N -0.567 5.567 18 Si 0.744 3.256 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.034 3.966 23 C -0.180 4.180 24 C -0.039 4.039 25 C -0.226 4.226 26 C -0.236 4.236 27 C -0.104 4.104 28 O -0.054 6.054 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.907 7.558 -24.312 26.380 hybrid contribution 0.090 0.231 0.588 0.638 sum -6.817 7.788 -23.724 25.884 Atomic orbital electron populations 1.21829 0.91188 1.03890 1.03441 1.19893 0.98248 0.99264 0.87618 0.85647 1.20410 0.80470 0.84877 0.84286 1.90781 1.36728 1.25501 1.86423 1.45848 1.53931 1.32004 1.05081 1.22777 0.99701 0.93113 0.83647 0.87523 1.23747 0.97915 0.98743 0.83263 1.88481 1.85669 1.32463 1.18463 1.23409 0.99888 0.83613 0.91611 1.22686 0.95403 0.94960 0.88439 1.45481 1.11685 1.59780 1.15783 1.18888 0.95110 1.29361 0.90911 0.90111 1.24816 0.95070 1.01646 0.98943 1.69837 0.98093 1.48685 1.40076 0.86113 0.76686 0.80106 0.82690 1.21415 1.21677 1.20714 1.22323 0.91195 1.00029 0.83070 1.23130 1.03512 0.98220 0.93111 1.21499 1.02150 0.82892 0.97400 1.21534 1.03688 1.01319 0.96087 1.21776 1.05766 0.93565 1.02529 1.24048 0.98900 1.00770 0.86707 1.84037 1.58917 1.27559 1.34929 0.91268 0.90909 0.90778 0.76354 0.89684 0.92492 0.93603 0.94010 0.93617 0.94109 0.91460 0.90179 0.89084 0.83527 0.83513 0.78201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.07 37.16 0.34 -0.54 16 2 C -0.03 -0.23 3.13 -92.93 -0.29 -0.52 16 3 H 0.13 0.64 8.10 -51.93 -0.42 0.22 16 4 C 0.51 5.92 7.15 -10.99 -0.08 5.84 16 5 O -0.52 -8.54 15.55 -1.24 -0.02 -8.56 16 6 N -0.72 -7.00 5.13 -51.50 -0.26 -7.26 16 7 C 0.11 1.50 3.37 -65.54 -0.22 1.28 16 8 H 0.11 1.65 7.74 -51.93 -0.40 1.24 16 9 C 0.04 0.64 7.49 38.23 0.29 0.93 16 10 O -0.33 -6.79 11.18 -35.23 -0.39 -7.19 16 11 C 0.06 1.08 1.75 -90.44 -0.16 0.92 16 12 C 0.11 2.34 8.20 -8.08 -0.07 2.27 16 13 N -0.60 -16.12 3.77 -184.60 -0.70 -16.82 16 14 C -0.22 -6.29 10.73 -15.06 -0.16 -6.45 16 15 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 17 N -0.92 -28.23 11.82 55.49 0.66 -27.57 16 18 Si 0.91 22.83 29.56 -169.99 -5.02 17.80 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.16 3.86 6.71 -7.92 -0.05 3.80 16 23 C -0.14 -1.88 6.03 -25.07 -0.15 -2.03 16 24 C 0.01 0.12 5.20 -35.63 -0.19 -0.06 16 25 C -0.21 -1.98 10.78 -39.70 -0.43 -2.40 16 26 C -0.22 -1.97 10.91 -39.70 -0.43 -2.41 16 27 C -0.04 -0.34 12.09 29.42 0.36 0.02 16 28 O -0.16 -1.93 10.35 -1.10 -0.01 -1.94 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.29 7.56 -51.93 -0.39 -0.10 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.40 2.53 7.92 -40.82 -0.32 2.20 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.80 8.13 -51.93 -0.42 0.37 16 37 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.04 0.97 7.95 -51.93 -0.41 0.55 16 39 H 0.07 1.84 7.60 -51.93 -0.39 1.45 16 40 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 41 H 0.09 1.16 7.81 -51.93 -0.41 0.76 16 42 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 43 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -37.68 368.59 -8.06 -45.74 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.52 Total: -0.07 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.34 Total: 0.31 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.30 Total: -51.65 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.42 Total: -17.68 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.68 -8.06 -45.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053923360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.581 kcal (2) G-P(sol) polarization free energy of solvation -37.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds