Wall clock time and date at job start Tue Mar 31 2020 13:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46864 * 2 1 4 4 C 1.50697 * 109.47361 * 120.00277 * 2 1 3 5 5 O 1.21281 * 120.00007 * 119.99344 * 4 2 1 6 6 N 1.34779 * 119.99789 * 300.00197 * 4 2 1 7 7 C 1.46497 * 119.99721 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.97604 * 37.69236 * 7 6 4 9 9 C 1.55021 * 111.10557 * 273.54346 * 7 6 4 10 10 O 1.43912 * 105.17972 * 206.02899 * 9 7 6 11 11 C 1.42402 * 109.55569 * 24.29758 * 10 9 7 12 12 C 1.52697 * 116.14175 * 129.84377 * 11 10 9 13 13 N 1.47219 * 87.79736 * 90.69826 * 12 11 10 14 14 C 1.36935 * 135.97407 * 206.45759 * 13 12 11 15 15 H 1.07995 * 120.00083 * 6.48300 * 14 13 12 16 16 C 1.38817 * 119.99741 * 186.48632 * 14 13 12 17 17 N 1.31621 * 119.99777 * 6.41211 * 16 14 13 18 18 Si 1.86796 * 119.99659 * 186.41024 * 16 14 13 19 19 H 1.48494 * 109.47314 * 84.99017 * 18 16 14 20 20 H 1.48507 * 109.46943 * 204.98927 * 18 16 14 21 21 H 1.48495 * 109.47489 * 324.98593 * 18 16 14 22 22 C 1.47209 * 88.04832 * 26.71385 * 13 12 11 23 23 C 1.53651 * 108.53393 * 358.08024 * 11 10 9 24 24 C 1.50699 * 109.46953 * 240.00259 * 2 1 3 25 25 C 1.34512 * 125.78746 * 119.71646 * 24 2 1 26 26 C 1.41391 * 106.84092 * 179.89175 * 25 24 2 27 27 C 1.34515 * 106.83818 * 0.36932 * 26 25 24 28 28 O 1.34304 * 125.79051 * 300.02287 * 24 2 1 29 29 H 1.09003 * 109.47594 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47253 * 299.99604 * 1 2 3 31 31 H 1.09006 * 109.47435 * 59.99759 * 1 2 3 32 32 H 0.97002 * 120.00077 * 359.97438 * 6 4 2 33 33 H 1.08999 * 110.30044 * 87.10618 * 9 7 6 34 34 H 1.08990 * 110.38487 * 324.99645 * 9 7 6 35 35 H 1.09002 * 113.49773 * 335.97102 * 12 11 10 36 36 H 1.09000 * 113.56066 * 205.44246 * 12 11 10 37 37 H 0.96998 * 119.99574 * 180.02562 * 17 16 14 38 38 H 1.08998 * 113.50414 * 88.02132 * 22 13 12 39 39 H 1.09006 * 113.49869 * 218.55501 * 22 13 12 40 40 H 1.09003 * 110.92717 * 97.30122 * 23 11 10 41 41 H 1.08998 * 110.93473 * 220.96481 * 23 11 10 42 42 H 1.07998 * 126.58611 * 0.02562 * 25 24 2 43 43 H 1.07992 * 126.58121 * 180.16758 * 26 25 24 44 44 H 1.07998 * 125.78850 * 179.75730 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7067 -0.2500 2.4545 7 6 2.1947 -0.9410 3.6506 8 1 3.2124 -1.3029 3.5043 9 6 1.2438 -2.0968 4.0545 10 8 1.4363 -2.2658 5.4706 11 6 1.9194 -1.0506 6.0343 12 6 1.1767 -0.5383 7.2662 13 7 2.1258 -1.3072 8.0880 14 6 2.1087 -1.8885 9.3278 15 1 1.1921 -1.9171 9.8981 16 6 3.2696 -2.4407 9.8514 17 7 4.4126 -2.2956 9.2151 18 14 3.2096 -3.3899 11.4592 19 1 2.8306 -4.7997 11.1879 20 1 4.5457 -3.3522 12.1064 21 1 2.2050 -2.7721 12.3615 22 6 3.1034 -1.1719 6.9958 23 6 2.0998 -0.0256 4.9039 24 6 2.0323 -0.7104 -1.2305 25 6 2.8044 -0.1703 -2.1904 26 6 3.0377 -1.1846 -3.1475 27 6 2.3873 -2.2814 -2.7192 28 8 1.7801 -1.9883 -1.5576 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.1493 0.5388 2.5436 33 1 1.5130 -3.0106 3.5246 34 1 0.2089 -1.8286 3.8429 35 1 0.1503 -0.8987 7.3359 36 1 1.2554 0.5399 7.4054 37 1 5.2237 -2.6818 9.5808 38 1 3.7051 -0.2653 7.0608 39 1 3.7044 -2.0673 6.8370 40 1 1.2368 0.6370 4.8377 41 1 3.0182 0.5457 5.0391 42 1 3.1768 0.8429 -2.2229 43 1 3.6227 -1.0949 -4.0507 44 1 2.3581 -3.2358 -3.2239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053923360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:31 Heat of formation + Delta-G solvation = -23.975659 kcal Electronic energy + Delta-G solvation = -26800.111308 eV Core-core repulsion = 22913.581442 eV Total energy + Delta-G solvation = -3886.529867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.48629 -41.65927 -40.54097 -37.94636 -35.76671 -35.17111 -34.20731 -33.74713 -31.67490 -29.94846 -29.30358 -27.38998 -26.55040 -25.66856 -23.98949 -22.99998 -22.64771 -21.98925 -20.93301 -20.58134 -18.82848 -18.58197 -18.10118 -17.47438 -17.12676 -16.78885 -16.46370 -16.32043 -16.16321 -15.82195 -15.30209 -15.17448 -14.86138 -14.76425 -14.46899 -14.24664 -13.67050 -13.56508 -13.52496 -13.42818 -13.32696 -13.10641 -12.83982 -12.76023 -12.66127 -12.53827 -12.47922 -12.25053 -11.76765 -11.65897 -11.35588 -10.94717 -10.91637 -10.77003 -10.33346 -10.11871 -9.37145 -8.95155 -7.94283 -5.25220 0.80719 1.42262 1.46903 1.53003 1.53940 1.69109 2.04357 2.17789 2.46202 2.81323 3.27338 3.32138 3.54307 3.57120 3.60218 3.74702 3.75747 4.01660 4.06639 4.14530 4.17654 4.24351 4.36196 4.64621 4.65835 4.75546 4.78089 4.82736 4.85564 4.88700 4.89616 4.96871 4.99104 5.04437 5.16067 5.18823 5.19864 5.30572 5.38767 5.46877 5.65344 5.89505 6.27087 6.28607 6.49419 6.88113 7.19783 7.57904 8.58928 9.25250 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032121 B = 0.002354 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.490037 B =11890.436494 C =12212.546774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 H 0.163 0.837 4 C 0.513 3.487 5 O -0.577 6.577 6 N -0.694 5.694 7 C 0.125 3.875 8 H 0.079 0.921 9 C 0.039 3.961 10 O -0.373 6.373 11 C 0.076 3.924 12 C 0.115 3.885 13 N -0.641 5.641 14 C -0.228 4.228 15 H 0.085 0.915 16 C -0.073 4.073 17 N -0.956 5.956 18 Si 0.982 3.018 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.264 1.264 22 C 0.153 3.847 23 C -0.122 4.122 24 C -0.014 4.014 25 C -0.214 4.214 26 C -0.227 4.227 27 C -0.053 4.053 28 O -0.189 6.189 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.424 0.576 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.248 0.752 38 H 0.043 0.957 39 H 0.017 0.983 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.239 11.447 -26.068 29.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.042 4.042 3 H 0.180 0.820 4 C 0.300 3.700 5 O -0.455 6.455 6 N -0.349 5.349 7 C 0.019 3.981 8 H 0.097 0.903 9 C -0.038 4.038 10 O -0.291 6.291 11 C 0.035 3.965 12 C -0.010 4.010 13 N -0.367 5.367 14 C -0.356 4.356 15 H 0.103 0.897 16 C -0.265 4.265 17 N -0.605 5.605 18 Si 0.810 3.190 19 H -0.215 1.215 20 H -0.219 1.219 21 H -0.188 1.188 22 C 0.027 3.973 23 C -0.160 4.160 24 C -0.064 4.064 25 C -0.233 4.233 26 C -0.246 4.246 27 C -0.120 4.120 28 O -0.085 6.085 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.036 0.964 40 H 0.144 0.856 41 H 0.121 0.879 42 H 0.187 0.813 43 H 0.185 0.815 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.865 10.210 -25.534 28.893 hybrid contribution 0.655 -0.606 0.861 1.240 sum -8.210 9.603 -24.673 27.719 Atomic orbital electron populations 1.21857 0.89407 1.03117 1.05550 1.20059 0.99537 1.00028 0.84561 0.81951 1.21108 0.79309 0.84141 0.85433 1.90768 1.39350 1.28157 1.87215 1.45575 1.53615 1.32191 1.03479 1.22357 0.97945 0.92692 0.85137 0.90298 1.23913 0.99976 0.99190 0.80770 1.88435 1.85576 1.33856 1.21221 1.23044 0.95926 0.84746 0.92819 1.22899 0.94602 0.95958 0.87585 1.45895 1.14068 1.61091 1.15672 1.19318 0.95259 1.29003 0.92001 0.89691 1.25724 0.94846 1.03228 1.02734 1.70031 0.98516 1.50142 1.41805 0.85043 0.76799 0.78351 0.78845 1.21544 1.21851 1.18812 1.22372 0.92281 0.97785 0.84901 1.23055 1.06163 0.96938 0.89893 1.22086 1.02985 0.82696 0.98662 1.21937 1.03082 1.02441 0.95859 1.22162 1.05759 0.93411 1.03272 1.24709 0.98783 1.02205 0.86304 1.84018 1.59818 1.28693 1.36018 0.93472 0.88205 0.89260 0.73613 0.91281 0.89614 0.93188 0.90741 0.94316 0.93904 0.96434 0.85583 0.87946 0.81305 0.81465 0.75766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.07 71.98 0.65 -0.59 16 2 C -0.02 -0.28 3.13 -12.29 -0.04 -0.32 16 3 H 0.16 0.93 8.10 -2.39 -0.02 0.91 16 4 C 0.51 10.93 7.15 87.66 0.63 11.56 16 5 O -0.58 -19.15 15.55 3.46 0.05 -19.09 16 6 N -0.69 -11.40 5.13 -435.24 -2.23 -13.64 16 7 C 0.13 3.12 3.37 46.54 0.16 3.27 16 8 H 0.08 2.46 7.74 -2.39 -0.02 2.45 16 9 C 0.04 1.17 7.49 72.67 0.54 1.71 16 10 O -0.37 -15.22 11.18 -148.98 -1.67 -16.89 16 11 C 0.08 2.83 1.75 -10.67 -0.02 2.82 16 12 C 0.11 4.58 8.20 83.37 0.68 5.27 16 13 N -0.64 -34.75 3.77 -739.01 -2.79 -37.53 16 14 C -0.23 -13.49 10.73 84.04 0.90 -12.59 16 15 H 0.09 4.78 7.84 -2.91 -0.02 4.76 16 16 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 17 N -0.96 -60.95 11.82 21.65 0.26 -60.70 16 18 Si 0.98 47.92 29.56 68.60 2.03 49.95 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.15 7.57 6.71 83.48 0.56 8.13 16 23 C -0.12 -2.86 6.03 31.67 0.19 -2.67 16 24 C -0.01 -0.27 5.20 24.83 0.13 -0.15 16 25 C -0.21 -3.73 10.78 22.19 0.24 -3.49 16 26 C -0.23 -3.86 10.91 22.19 0.24 -3.62 16 27 C -0.05 -0.98 12.09 66.97 0.81 -0.17 16 28 O -0.19 -4.59 10.35 3.96 0.04 -4.55 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.32 7.56 -2.39 -0.02 0.30 16 31 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.42 3.13 7.92 -92.71 -0.73 2.40 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.08 2.55 8.13 -2.39 -0.02 2.53 16 37 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.04 2.07 7.95 -2.39 -0.02 2.05 16 39 H 0.02 1.01 7.60 -2.38 -0.02 0.99 16 40 H 0.13 1.90 7.96 -2.39 -0.02 1.88 16 41 H 0.10 2.28 7.81 -2.39 -0.02 2.26 16 42 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.23 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -88.49 368.59 2.11 -86.38 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.28 Total: 10.81 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.15 Total: 5.26 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -4.76 Total: -111.87 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.57 Total: -40.53 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -88.49 2.11 -86.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053923360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.401 kcal (2) G-P(sol) polarization free energy of solvation -88.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds