Wall clock time and date at job start Tue Mar 31 2020 13:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.89015 * 2 1 4 4 C 1.55134 * 110.93888 * 124.07837 * 2 1 3 5 5 N 1.47431 * 104.71920 * 155.28771 * 4 2 1 6 6 C 1.34771 * 125.64519 * 155.81847 * 5 4 2 7 7 O 1.21287 * 119.99921 * 356.54936 * 6 5 4 8 8 C 1.50699 * 120.00148 * 176.55383 * 6 5 4 9 9 C 1.52998 * 112.84652 * 287.44670 * 8 6 5 10 10 F 1.39899 * 109.47341 * 75.63565 * 9 8 6 11 11 F 1.39902 * 109.47245 * 195.63652 * 9 8 6 12 12 F 1.39903 * 109.47546 * 315.63265 * 9 8 6 13 13 C 1.53776 * 113.61772 * 156.24988 * 8 6 5 14 14 C 1.54049 * 86.98461 * 270.83691 * 13 8 6 15 15 C 1.53777 * 87.07981 * 334.56655 * 14 13 8 16 16 C 1.47018 * 108.70534 * 335.54969 * 5 4 2 17 17 C 1.54334 * 107.27010 * 1.29013 * 16 5 4 18 18 H 1.08995 * 110.71855 * 140.55567 * 17 16 5 19 19 N 1.46495 * 110.71725 * 263.65179 * 17 16 5 20 20 C 1.36945 * 119.99825 * 273.54396 * 19 17 16 21 21 H 1.07999 * 120.00051 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99885 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99915 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99922 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47022 * 60.00032 * 24 22 20 26 26 H 1.48501 * 109.47108 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46950 * 300.00226 * 24 22 20 28 28 H 1.08998 * 109.47133 * 183.88215 * 1 2 3 29 29 H 1.09006 * 109.46907 * 303.88050 * 1 2 3 30 30 H 1.08997 * 109.47357 * 63.87841 * 1 2 3 31 31 H 1.09002 * 110.49791 * 36.44475 * 4 2 1 32 32 H 1.09001 * 110.34311 * 274.05029 * 4 2 1 33 33 H 1.09002 * 113.61325 * 25.42894 * 13 8 6 34 34 H 1.09002 * 113.61542 * 156.33684 * 13 8 6 35 35 H 1.08996 * 113.62376 * 220.01840 * 14 13 8 36 36 H 1.09002 * 113.69222 * 89.12762 * 14 13 8 37 37 H 1.08999 * 113.61710 * 270.88446 * 15 14 13 38 38 H 1.09006 * 113.69265 * 139.98060 * 15 14 13 39 39 H 1.08993 * 109.88140 * 120.70243 * 16 5 4 40 40 H 1.09000 * 109.88424 * 241.87611 * 16 5 4 41 41 H 0.96998 * 120.00665 * 93.54923 * 19 17 16 42 42 H 0.97001 * 119.99704 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0844 -0.8119 1.2001 5 7 3.4281 -1.2423 0.7724 6 6 4.4490 -1.5604 1.5927 7 8 4.3212 -1.4441 2.7932 8 6 5.7494 -2.0605 1.0183 9 6 5.6494 -3.4876 0.4758 10 9 4.9737 -3.4746 -0.7491 11 9 6.9350 -4.0085 0.2937 12 9 4.9481 -4.2848 1.3868 13 6 6.9579 -1.8361 1.9424 14 6 7.1221 -0.4649 1.2597 15 6 6.4105 -1.0747 0.0404 16 6 3.4679 -1.2731 -0.6969 17 6 2.0861 -0.8075 -1.2026 18 1 2.1915 -0.1694 -2.0799 19 7 1.2287 -1.9574 -1.5003 20 6 1.2850 -2.5527 -2.7323 21 1 1.9618 -2.1746 -3.4843 22 6 0.4722 -3.6420 -3.0147 23 7 -0.3530 -4.1024 -2.0984 24 14 0.5495 -4.4544 -4.6950 25 1 1.9245 -4.9604 -4.9374 26 1 -0.4096 -5.5872 -4.7417 27 1 0.1956 -3.4619 -5.7413 28 1 -0.3633 -1.0253 0.0696 29 1 -0.3633 0.5729 0.8532 30 1 -0.3634 0.4524 -0.9227 31 1 1.4537 -1.6784 1.3986 32 1 2.1524 -0.1802 2.0858 33 1 6.6942 -1.7710 2.9980 34 1 7.7853 -2.5199 1.7530 35 1 8.1604 -0.1937 1.0687 36 1 6.5576 0.3341 1.7403 37 1 7.0885 -1.5509 -0.6679 38 1 5.7049 -0.3965 -0.4394 39 1 4.2425 -0.5983 -1.0610 40 1 3.6657 -2.2882 -1.0412 41 1 0.6210 -2.2972 -0.8249 42 1 -0.9212 -4.8634 -2.2958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054806114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:43 Heat of formation + Delta-G solvation = -138.607239 kcal Electronic energy + Delta-G solvation = -29796.313013 eV Core-core repulsion = 25362.955608 eV Total energy + Delta-G solvation = -4433.357405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.07540 -47.60970 -47.48950 -40.73379 -38.53647 -37.03682 -34.00879 -32.44717 -30.51907 -29.04687 -27.76879 -26.57673 -25.79596 -23.94123 -23.65087 -22.46076 -20.87047 -19.35031 -18.95443 -18.32171 -18.20309 -18.09245 -17.37944 -16.26527 -15.83777 -15.67856 -14.75375 -14.63427 -14.44287 -14.32966 -14.24843 -13.98186 -13.77043 -13.66897 -13.60108 -13.28511 -12.97633 -12.87346 -12.73039 -12.64968 -12.41705 -12.16646 -11.99862 -11.49421 -11.15789 -11.12735 -10.92130 -10.85546 -10.77203 -10.63419 -10.43190 -10.29327 -9.96685 -9.85491 -9.63849 -9.00256 -8.33281 -7.07153 -5.83641 -3.13750 2.25604 2.96297 2.97244 3.40459 3.45459 3.46301 3.63092 3.82915 3.93550 4.29143 4.41537 4.51890 4.52815 4.61778 4.89137 5.08592 5.14771 5.27412 5.30872 5.34759 5.50015 5.59094 5.64898 5.66381 5.75083 5.79493 5.86401 5.93121 6.00244 6.15170 6.24672 6.29882 6.35077 6.48518 6.54826 6.76801 6.89141 7.63475 7.68613 8.15880 8.34124 9.46071 10.00002 10.34628 11.38395 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.005461 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.935454 B = 5126.151329 C = 6264.109502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 H 0.079 0.921 4 C 0.114 3.886 5 N -0.594 5.594 6 C 0.554 3.446 7 O -0.533 6.533 8 C -0.161 4.161 9 C 0.470 3.530 10 F -0.160 7.160 11 F -0.180 7.180 12 F -0.176 7.176 13 C -0.112 4.112 14 C -0.133 4.133 15 C -0.125 4.125 16 C 0.037 3.963 17 C 0.174 3.826 18 H 0.071 0.929 19 N -0.710 5.710 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.007 4.007 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.387 0.613 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.341 8.399 5.649 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.133 4.133 3 H 0.098 0.902 4 C -0.008 4.008 5 N -0.325 5.325 6 C 0.340 3.660 7 O -0.410 6.410 8 C -0.165 4.165 9 C 0.415 3.585 10 F -0.141 7.141 11 F -0.161 7.161 12 F -0.157 7.157 13 C -0.150 4.150 14 C -0.170 4.170 15 C -0.162 4.162 16 C -0.088 4.088 17 C 0.061 3.939 18 H 0.088 0.912 19 N -0.352 5.352 20 C -0.377 4.377 21 H 0.089 0.911 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.737 3.263 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.222 0.778 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.300 8.318 6.127 16.841 hybrid contribution -0.192 -1.121 -0.914 1.459 sum 13.108 7.197 5.214 15.837 Atomic orbital electron populations 1.21546 0.93252 1.03042 1.01039 1.22657 0.97053 0.98370 0.95239 0.90223 1.22396 0.82214 0.98624 0.97516 1.48359 1.11597 1.64360 1.08200 1.18648 0.82797 0.78663 0.85931 1.90685 1.81843 1.54390 1.14128 1.23462 0.98248 0.91841 1.02980 1.20004 0.73679 0.88332 0.76458 1.93153 1.79480 1.96501 1.44945 1.93142 1.39189 1.88427 1.95338 1.93229 1.79106 1.76513 1.66846 1.23016 0.93733 0.98084 1.00158 1.22833 1.01651 0.96691 0.95848 1.23209 0.99524 0.96889 0.96552 1.24134 1.01899 1.04702 0.78084 1.21188 0.88235 0.89887 0.94578 0.91168 1.42433 1.45378 1.32720 1.14633 1.19156 1.18598 1.09576 0.90418 0.91067 1.24736 0.98928 0.98794 0.97877 1.69643 1.27247 1.27452 1.33280 0.86295 0.77268 0.78927 0.83838 1.21199 1.21701 1.21183 0.91160 0.93637 0.92001 0.90859 0.91001 0.88544 0.87912 0.89898 0.89408 0.87989 0.88622 0.92208 0.87627 0.77751 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.71 3.53 -88.35 -0.31 -2.02 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.11 1.86 6.37 -2.40 -0.02 1.84 16 5 N -0.59 -9.90 3.32 -170.37 -0.57 -10.47 16 6 C 0.55 9.27 6.00 -10.99 -0.07 9.21 16 7 O -0.53 -10.16 16.28 5.55 0.09 -10.07 16 8 C -0.16 -2.21 0.53 -154.85 -0.08 -2.30 16 9 C 0.47 7.32 2.73 37.16 0.10 7.42 16 10 F -0.16 -2.78 13.40 2.25 0.03 -2.75 16 11 F -0.18 -2.47 15.81 2.25 0.04 -2.43 16 12 F -0.18 -3.15 16.77 2.25 0.04 -3.11 16 13 C -0.11 -1.25 7.01 -25.78 -0.18 -1.43 16 14 C -0.13 -1.23 7.81 -25.78 -0.20 -1.44 16 15 C -0.12 -1.32 6.40 -25.92 -0.17 -1.49 16 16 C 0.04 0.61 5.33 -3.06 -0.02 0.60 16 17 C 0.17 3.11 3.36 -66.09 -0.22 2.89 16 18 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 19 N -0.71 -16.33 4.62 -51.65 -0.24 -16.57 16 20 C -0.25 -6.40 9.98 -15.05 -0.15 -6.55 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 24 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 28 H 0.07 1.26 6.39 -51.93 -0.33 0.92 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.32 7.99 -51.93 -0.41 0.91 16 32 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 33 H 0.10 1.17 7.38 -51.93 -0.38 0.78 16 34 H 0.10 0.98 7.03 -51.93 -0.36 0.61 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.95 8.04 -51.93 -0.42 0.53 16 38 H 0.10 1.03 5.24 -51.93 -0.27 0.75 16 39 H 0.06 0.83 5.53 -51.93 -0.29 0.55 16 40 H 0.11 2.05 4.65 -51.93 -0.24 1.81 16 41 H 0.39 9.59 6.12 -40.82 -0.25 9.34 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -30.24 338.86 -6.34 -36.58 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.46 Total: 8.56 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.08 Total: 4.78 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.08 Total: -53.41 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 0.10 Total: -8.29 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.24 -6.34 -36.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054806114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.027 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds