Wall clock time and date at job start Tue Mar 31 2020 13:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.89015 * 2 1 4 4 C 1.55134 * 110.93888 * 124.07837 * 2 1 3 5 5 N 1.47431 * 104.71920 * 155.28771 * 4 2 1 6 6 C 1.34771 * 125.64519 * 155.81847 * 5 4 2 7 7 O 1.21287 * 119.99921 * 356.54936 * 6 5 4 8 8 C 1.50699 * 120.00148 * 176.55383 * 6 5 4 9 9 C 1.52998 * 112.84652 * 287.44670 * 8 6 5 10 10 F 1.39899 * 109.47341 * 75.63565 * 9 8 6 11 11 F 1.39902 * 109.47245 * 195.63652 * 9 8 6 12 12 F 1.39903 * 109.47546 * 315.63265 * 9 8 6 13 13 C 1.53776 * 113.61772 * 156.24988 * 8 6 5 14 14 C 1.54049 * 86.98461 * 270.83691 * 13 8 6 15 15 C 1.53777 * 87.07981 * 334.56655 * 14 13 8 16 16 C 1.47018 * 108.70534 * 335.54969 * 5 4 2 17 17 C 1.54334 * 107.27010 * 1.29013 * 16 5 4 18 18 H 1.08995 * 110.71855 * 140.55567 * 17 16 5 19 19 N 1.46495 * 110.71725 * 263.65179 * 17 16 5 20 20 C 1.36945 * 119.99825 * 273.54396 * 19 17 16 21 21 H 1.07999 * 120.00051 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99885 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99915 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99922 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47022 * 60.00032 * 24 22 20 26 26 H 1.48501 * 109.47108 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46950 * 300.00226 * 24 22 20 28 28 H 1.08998 * 109.47133 * 183.88215 * 1 2 3 29 29 H 1.09006 * 109.46907 * 303.88050 * 1 2 3 30 30 H 1.08997 * 109.47357 * 63.87841 * 1 2 3 31 31 H 1.09002 * 110.49791 * 36.44475 * 4 2 1 32 32 H 1.09001 * 110.34311 * 274.05029 * 4 2 1 33 33 H 1.09002 * 113.61325 * 25.42894 * 13 8 6 34 34 H 1.09002 * 113.61542 * 156.33684 * 13 8 6 35 35 H 1.08996 * 113.62376 * 220.01840 * 14 13 8 36 36 H 1.09002 * 113.69222 * 89.12762 * 14 13 8 37 37 H 1.08999 * 113.61710 * 270.88446 * 15 14 13 38 38 H 1.09006 * 113.69265 * 139.98060 * 15 14 13 39 39 H 1.08993 * 109.88140 * 120.70243 * 16 5 4 40 40 H 1.09000 * 109.88424 * 241.87611 * 16 5 4 41 41 H 0.96998 * 120.00665 * 93.54923 * 19 17 16 42 42 H 0.97001 * 119.99704 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0844 -0.8119 1.2001 5 7 3.4281 -1.2423 0.7724 6 6 4.4490 -1.5604 1.5927 7 8 4.3212 -1.4441 2.7932 8 6 5.7494 -2.0605 1.0183 9 6 5.6494 -3.4876 0.4758 10 9 4.9737 -3.4746 -0.7491 11 9 6.9350 -4.0085 0.2937 12 9 4.9481 -4.2848 1.3868 13 6 6.9579 -1.8361 1.9424 14 6 7.1221 -0.4649 1.2597 15 6 6.4105 -1.0747 0.0404 16 6 3.4679 -1.2731 -0.6969 17 6 2.0861 -0.8075 -1.2026 18 1 2.1915 -0.1694 -2.0799 19 7 1.2287 -1.9574 -1.5003 20 6 1.2850 -2.5527 -2.7323 21 1 1.9618 -2.1746 -3.4843 22 6 0.4722 -3.6420 -3.0147 23 7 -0.3530 -4.1024 -2.0984 24 14 0.5495 -4.4544 -4.6950 25 1 1.9245 -4.9604 -4.9374 26 1 -0.4096 -5.5872 -4.7417 27 1 0.1956 -3.4619 -5.7413 28 1 -0.3633 -1.0253 0.0696 29 1 -0.3633 0.5729 0.8532 30 1 -0.3634 0.4524 -0.9227 31 1 1.4537 -1.6784 1.3986 32 1 2.1524 -0.1802 2.0858 33 1 6.6942 -1.7710 2.9980 34 1 7.7853 -2.5199 1.7530 35 1 8.1604 -0.1937 1.0687 36 1 6.5576 0.3341 1.7403 37 1 7.0885 -1.5509 -0.6679 38 1 5.7049 -0.3965 -0.4394 39 1 4.2425 -0.5983 -1.0610 40 1 3.6657 -2.2882 -1.0412 41 1 0.6210 -2.2972 -0.8249 42 1 -0.9212 -4.8634 -2.2958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054806114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:43 Heat of formation + Delta-G solvation = -156.925748 kcal Electronic energy + Delta-G solvation = -29797.107363 eV Core-core repulsion = 25362.955608 eV Total energy + Delta-G solvation = -4434.151756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.33111 -48.84365 -48.80314 -41.91726 -39.77583 -38.28462 -35.73885 -33.96107 -32.24304 -30.13531 -29.32012 -27.75253 -26.76627 -25.78508 -24.84107 -23.78105 -21.97513 -20.74472 -20.11845 -19.60707 -19.50329 -19.41709 -19.04353 -17.54254 -17.24376 -16.79675 -16.41162 -15.92004 -15.83949 -15.64539 -15.43323 -15.42728 -15.18403 -14.97888 -14.87889 -14.71624 -14.47615 -14.19036 -13.96477 -13.62864 -13.42960 -13.37962 -13.32897 -12.97979 -12.81432 -12.71515 -12.32875 -12.17990 -12.02260 -11.93429 -11.75409 -11.62654 -11.42127 -11.35936 -11.12835 -10.87818 -9.70541 -8.99074 -7.90893 -5.18524 1.00097 1.49200 1.51196 1.56514 1.73557 1.74203 2.58120 2.59010 2.67123 2.79998 3.21634 3.38404 3.40871 3.44980 3.62816 3.69829 3.86681 3.94111 4.05891 4.21034 4.38772 4.47457 4.57469 4.60322 4.68706 4.71673 4.83055 4.87014 4.88859 4.99213 5.02344 5.05238 5.15635 5.24542 5.26681 5.36093 5.55025 5.60419 6.30465 6.36783 6.84697 7.38183 8.12961 8.34916 9.32329 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.005461 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.935454 B = 5126.151329 C = 6264.109502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.096 4.096 3 H 0.116 0.884 4 C 0.112 3.888 5 N -0.596 5.596 6 C 0.550 3.450 7 O -0.562 6.562 8 C -0.171 4.171 9 C 0.465 3.535 10 F -0.173 7.173 11 F -0.167 7.167 12 F -0.197 7.197 13 C -0.110 4.110 14 C -0.118 4.118 15 C -0.117 4.117 16 C 0.045 3.955 17 C 0.162 3.838 18 H 0.084 0.916 19 N -0.722 5.722 20 C -0.232 4.232 21 H 0.083 0.917 22 C -0.073 4.073 23 N -0.970 5.970 24 Si 0.964 3.036 25 H -0.282 1.282 26 H -0.303 1.303 27 H -0.274 1.274 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.374 0.626 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.693 10.634 4.888 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.116 4.116 3 H 0.134 0.866 4 C -0.010 4.010 5 N -0.327 5.327 6 C 0.337 3.663 7 O -0.441 6.441 8 C -0.175 4.175 9 C 0.410 3.590 10 F -0.154 7.154 11 F -0.148 7.148 12 F -0.178 7.178 13 C -0.148 4.148 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.079 4.079 17 C 0.051 3.949 18 H 0.102 0.898 19 N -0.362 5.362 20 C -0.364 4.364 21 H 0.100 0.900 22 C -0.265 4.265 23 N -0.620 5.620 24 Si 0.794 3.206 25 H -0.208 1.208 26 H -0.230 1.230 27 H -0.200 1.200 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.208 0.792 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.699 10.602 5.347 19.684 hybrid contribution -0.873 -1.782 -0.614 2.077 sum 14.825 8.821 4.733 17.888 Atomic orbital electron populations 1.21476 0.93490 1.01268 1.02112 1.22627 0.96733 0.99360 0.92857 0.86633 1.22386 0.81947 0.97941 0.98705 1.48451 1.11698 1.64284 1.08267 1.19140 0.83635 0.77937 0.85599 1.90664 1.82581 1.55532 1.15355 1.23652 0.97611 0.90942 1.05305 1.20370 0.73698 0.89170 0.75735 1.93133 1.79927 1.96602 1.45776 1.93157 1.38068 1.88395 1.95228 1.93186 1.79756 1.77319 1.67549 1.23134 0.92790 0.99888 0.98985 1.22794 1.03310 0.95199 0.94159 1.23323 0.99482 0.95799 0.96837 1.23922 1.01861 1.04070 0.78045 1.21496 0.88229 0.88750 0.96376 0.89784 1.42602 1.46114 1.34027 1.13474 1.19585 1.16864 1.08515 0.91415 0.89960 1.25457 0.99795 1.00330 1.00953 1.69808 1.28928 1.28184 1.35119 0.85349 0.76832 0.77780 0.80642 1.20832 1.22975 1.20013 0.94591 0.90935 0.92222 0.93714 0.89753 0.89949 0.86118 0.86689 0.89963 0.86131 0.88507 0.88571 0.90215 0.79240 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.85 71.98 0.64 -3.07 16 2 C -0.10 -2.71 3.53 -9.32 -0.03 -2.74 16 3 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 4 C 0.11 3.58 6.37 86.93 0.55 4.13 16 5 N -0.60 -19.26 3.32 -811.32 -2.70 -21.96 16 6 C 0.55 17.93 6.00 87.66 0.53 18.46 16 7 O -0.56 -21.29 16.28 -3.05 -0.05 -21.34 16 8 C -0.17 -4.41 0.53 -52.40 -0.03 -4.44 16 9 C 0.46 14.11 2.73 71.98 0.20 14.31 16 10 F -0.17 -5.95 13.40 44.97 0.60 -5.35 16 11 F -0.17 -4.32 15.81 44.97 0.71 -3.60 16 12 F -0.20 -7.17 16.77 44.97 0.75 -6.42 16 13 C -0.11 -2.19 7.01 31.21 0.22 -1.98 16 14 C -0.12 -1.74 7.81 31.21 0.24 -1.50 16 15 C -0.12 -2.09 6.40 31.12 0.20 -1.89 16 16 C 0.05 1.44 5.33 86.73 0.46 1.90 16 17 C 0.16 5.54 3.36 46.18 0.16 5.69 16 18 H 0.08 2.68 8.12 -2.39 -0.02 2.66 16 19 N -0.72 -33.36 4.62 -317.31 -1.47 -34.82 16 20 C -0.23 -12.01 9.98 84.03 0.84 -11.17 16 21 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 22 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 23 N -0.97 -58.50 13.06 21.65 0.28 -58.22 16 24 Si 0.96 45.24 29.55 68.60 2.03 47.27 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 26 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 28 H 0.03 1.31 6.39 -2.39 -0.02 1.29 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.67 7.99 -2.39 -0.02 1.65 16 32 H 0.08 2.47 8.00 -2.39 -0.02 2.45 16 33 H 0.08 1.89 7.38 -2.39 -0.02 1.88 16 34 H 0.12 1.94 7.03 -2.39 -0.02 1.93 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.12 1.74 8.04 -2.39 -0.02 1.72 16 38 H 0.10 1.70 5.24 -2.38 -0.01 1.69 16 39 H 0.10 2.35 5.53 -2.39 -0.01 2.33 16 40 H 0.08 3.04 4.65 -2.39 -0.01 3.03 16 41 H 0.37 19.18 6.12 -92.71 -0.57 18.62 16 42 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -67.58 338.86 5.10 -62.48 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.50 Total: 27.88 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 4.44 Total: 14.09 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -3.88 Total: -115.00 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 9 Polarization: -17.44 SS G_CDS: 2.07 Total: -15.37 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.58 5.10 -62.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054806114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.447 kcal (2) G-P(sol) polarization free energy of solvation -67.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds