Wall clock time and date at job start Tue Mar 31 2020 13:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.91487 * 2 1 4 4 C 1.54906 * 111.00334 * 236.09866 * 2 1 3 5 5 N 1.47424 * 104.82986 * 204.91643 * 4 2 1 6 6 C 1.34777 * 125.65018 * 204.09538 * 5 4 2 7 7 O 1.21701 * 119.99630 * 359.97438 * 6 5 4 8 8 C 1.46654 * 120.00221 * 179.97438 * 6 5 4 9 9 O 1.35395 * 126.12044 * 359.97218 * 8 6 5 10 10 C 1.34396 * 109.47679 * 179.97438 * 9 8 6 11 11 C 1.33899 * 108.56284 * 359.96198 * 10 9 8 12 12 C 1.35185 * 126.11733 * 179.97438 * 8 6 5 13 13 C 1.50724 * 130.58001 * 0.26011 * 12 8 6 14 14 C 1.53677 * 107.44312 * 164.13875 * 13 12 8 15 15 O 1.42905 * 109.97485 * 48.24615 * 14 13 12 16 16 C 1.43510 * 114.76878 * 287.62556 * 15 14 13 17 17 C 1.47020 * 108.70302 * 24.35597 * 5 4 2 18 18 C 1.54328 * 107.26753 * 358.58438 * 17 5 4 19 19 H 1.09002 * 110.67109 * 96.52233 * 18 17 5 20 20 N 1.46503 * 110.85479 * 219.67426 * 18 17 5 21 21 C 1.36945 * 119.99863 * 268.69606 * 20 18 17 22 22 H 1.08000 * 119.99751 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99845 * 179.97438 * 21 20 18 24 24 N 1.31614 * 119.99868 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99850 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47256 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46620 * 120.00192 * 25 23 21 28 28 H 1.48493 * 109.47543 * 240.00140 * 25 23 21 29 29 H 1.09003 * 109.47092 * 182.44685 * 1 2 3 30 30 H 1.09005 * 109.47229 * 302.44721 * 1 2 3 31 31 H 1.08997 * 109.47198 * 62.44756 * 1 2 3 32 32 H 1.08997 * 110.36837 * 86.08372 * 4 2 1 33 33 H 1.08999 * 110.46013 * 323.79769 * 4 2 1 34 34 H 1.08002 * 125.71626 * 179.97438 * 10 9 8 35 35 H 1.08997 * 109.86191 * 44.65408 * 13 12 8 36 36 H 1.08996 * 109.86293 * 283.62378 * 13 12 8 37 37 H 1.08997 * 109.38662 * 288.09436 * 14 13 12 38 38 H 1.09001 * 109.39100 * 168.39963 * 14 13 12 39 39 H 1.08992 * 109.82721 * 171.03937 * 16 15 14 40 40 H 1.09005 * 109.82166 * 291.96469 * 16 15 14 41 41 H 1.09001 * 109.88363 * 118.13563 * 17 5 4 42 42 H 1.09005 * 109.88432 * 239.29576 * 17 5 4 43 43 H 0.96996 * 119.99703 * 88.68594 * 20 18 17 44 44 H 0.97003 * 119.99729 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2430 -0.7733 6 6 4.4477 -1.5615 -1.5939 7 8 4.3001 -1.5004 -2.8004 8 6 5.7359 -1.9817 -1.0331 9 8 6.0356 -2.0923 0.2826 10 6 7.3079 -2.5033 0.4194 11 6 7.8381 -2.6617 -0.7999 12 6 6.8368 -2.3278 -1.7373 13 6 7.0721 -2.3817 -3.2251 14 6 8.5910 -2.4492 -3.4490 15 8 9.1648 -3.4501 -2.6058 16 6 9.2180 -3.1053 -1.2138 17 6 3.4657 -1.2794 0.6960 18 6 2.0861 -0.8079 1.2022 19 1 1.4450 -1.6613 1.4230 20 7 2.2285 0.0496 2.3815 21 6 2.1999 -0.5002 3.6354 22 1 2.0719 -1.5659 3.7549 23 6 2.3354 0.3122 4.7527 24 7 2.4908 1.6110 4.6070 25 14 2.2956 -0.4377 6.4631 26 1 2.1107 -1.9072 6.3551 27 1 3.5753 -0.1500 7.1595 28 1 1.1699 0.1480 7.2344 29 1 -0.3633 -1.0268 0.0439 30 1 -0.3634 0.5514 0.8673 31 1 -0.3633 0.4753 -0.9111 32 1 2.1560 -0.1720 -2.0836 33 1 1.4525 -1.6704 -1.4042 34 1 7.8171 -2.6770 1.3559 35 1 6.6676 -1.4861 -3.6967 36 1 6.5963 -3.2686 -3.6434 37 1 9.0345 -1.4814 -3.2152 38 1 8.7925 -2.6954 -4.4916 39 1 9.5178 -3.9747 -0.6288 40 1 9.9287 -2.2931 -1.0611 41 1 3.6601 -2.2963 1.0367 42 1 4.2423 -0.6084 1.0631 43 1 2.3433 1.0068 2.2741 44 1 2.5851 2.1788 5.3879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054935364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:35 Heat of formation + Delta-G solvation = -47.911408 kcal Electronic energy + Delta-G solvation = -27431.368239 eV Core-core repulsion = 23543.800441 eV Total energy + Delta-G solvation = -3887.567799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.86453 -39.69755 -38.70770 -37.61442 -34.21114 -33.64146 -32.62449 -32.09606 -30.76378 -29.44796 -27.57862 -26.55958 -26.26459 -24.15956 -23.65203 -22.67599 -21.19672 -20.07341 -19.75312 -19.30659 -17.50031 -17.19943 -16.65731 -16.39001 -16.27291 -15.76505 -15.50238 -15.27843 -14.92932 -14.57913 -14.11966 -13.67451 -13.58058 -13.44608 -13.18252 -13.12082 -12.81103 -12.67034 -12.44781 -12.34612 -12.07250 -11.72712 -11.55777 -11.18817 -11.10514 -11.05325 -10.77871 -10.64649 -10.32538 -10.23908 -10.02379 -9.90229 -9.76483 -9.53464 -9.04703 -8.77695 -8.34695 -7.13285 -5.88599 -3.19426 1.08397 2.13714 2.67359 3.21700 3.23251 3.36135 3.42618 3.44412 3.56355 4.31885 4.42848 4.50831 4.66529 4.77859 4.91563 5.01313 5.09759 5.10112 5.15917 5.18086 5.29019 5.47207 5.53138 5.58673 5.64846 5.70451 5.74086 5.79651 5.86568 5.89496 5.92485 5.95629 6.16685 6.22172 6.23032 6.36488 6.44411 6.49393 6.57549 6.79886 6.83845 6.93123 7.59084 7.63665 8.14047 8.28640 9.40806 9.94025 10.29198 11.33335 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.003633 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.831052 B = 7704.645732 C = 9368.422715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.602 5.602 6 C 0.611 3.389 7 O -0.534 6.534 8 C -0.054 4.054 9 O -0.153 6.153 10 C 0.016 3.984 11 C -0.245 4.245 12 C -0.093 4.093 13 C -0.084 4.084 14 C 0.063 3.937 15 O -0.380 6.380 16 C 0.138 3.862 17 C 0.074 3.926 18 C 0.178 3.822 19 H 0.070 0.930 20 N -0.710 5.710 21 C -0.247 4.247 22 H 0.073 0.927 23 C -0.008 4.008 24 N -0.929 5.929 25 Si 0.907 3.093 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.211 0.789 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.387 0.613 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -7.313 -13.172 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.102 0.898 4 C -0.008 4.008 5 N -0.333 5.333 6 C 0.399 3.601 7 O -0.414 6.414 8 C -0.106 4.106 9 O -0.048 6.048 10 C -0.054 4.054 11 C -0.246 4.246 12 C -0.096 4.096 13 C -0.121 4.121 14 C -0.014 4.014 15 O -0.299 6.299 16 C 0.061 3.939 17 C -0.052 4.052 18 C 0.065 3.935 19 H 0.088 0.912 20 N -0.349 5.349 21 C -0.378 4.378 22 H 0.091 0.909 23 C -0.204 4.204 24 N -0.576 5.576 25 Si 0.738 3.262 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.227 0.773 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.221 0.779 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.692 -7.486 -13.496 17.712 hybrid contribution 0.189 0.170 1.302 1.327 sum 8.881 -7.316 -12.194 16.766 Atomic orbital electron populations 1.21595 0.93671 1.01884 1.01827 1.22674 0.96477 0.99828 0.94531 0.89756 1.22331 0.82050 0.98359 0.98041 1.48421 1.11880 1.64408 1.08609 1.16183 0.80719 0.77935 0.85244 1.90825 1.81819 1.55680 1.13046 1.21355 0.96686 1.11444 0.81069 1.84534 1.28123 1.66381 1.25760 1.23693 0.82564 0.99637 0.99469 1.20952 0.99715 1.10559 0.93389 1.20118 0.91805 1.00411 0.97228 1.20839 0.96906 1.04310 0.90015 1.22692 0.91989 0.91814 0.94886 1.87964 1.81678 1.43203 1.17035 1.21008 0.90181 1.00476 0.82227 1.23455 1.03290 1.01772 0.76656 1.21265 0.91469 0.93826 0.86930 0.91248 1.42361 1.86221 1.06209 1.00121 1.19296 1.42738 0.92640 0.83155 0.90907 1.24758 1.02273 0.95430 0.97970 1.69670 1.56040 1.02857 1.29044 0.86127 0.77247 0.78229 0.84612 1.20446 1.21801 1.21769 0.92753 0.91326 0.93142 0.90628 0.91239 0.77288 0.88595 0.89340 0.92820 0.88200 0.87680 0.91601 0.91935 0.90458 0.77865 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.29 37.16 0.35 -1.47 16 2 C -0.12 -1.80 3.27 -88.47 -0.29 -2.09 16 3 H 0.08 1.40 8.01 -51.93 -0.42 0.98 16 4 C 0.11 1.70 6.37 -2.53 -0.02 1.68 16 5 N -0.60 -10.09 3.33 -172.07 -0.57 -10.67 16 6 C 0.61 10.63 7.82 -12.86 -0.10 10.52 16 7 O -0.53 -9.90 15.89 5.19 0.08 -9.82 16 8 C -0.05 -0.87 6.93 -37.27 -0.26 -1.13 16 9 O -0.15 -2.36 8.33 2.34 0.02 -2.34 16 10 C 0.02 0.19 12.06 29.21 0.35 0.55 16 11 C -0.24 -2.98 6.04 -105.01 -0.63 -3.62 16 12 C -0.09 -1.33 6.02 -104.58 -0.63 -1.96 16 13 C -0.08 -1.03 5.71 -27.52 -0.16 -1.18 16 14 C 0.06 0.63 6.75 37.51 0.25 0.88 16 15 O -0.38 -4.33 10.70 -35.23 -0.38 -4.71 16 16 C 0.14 1.33 7.27 36.02 0.26 1.59 16 17 C 0.07 1.32 5.31 -3.06 -0.02 1.31 16 18 C 0.18 3.30 3.08 -66.09 -0.20 3.10 16 19 H 0.07 1.29 7.96 -51.93 -0.41 0.88 16 20 N -0.71 -16.54 5.15 -51.65 -0.27 -16.80 16 21 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -26.81 13.06 55.49 0.72 -26.08 16 25 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 33 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 34 H 0.21 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.10 1.20 7.64 -51.93 -0.40 0.81 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 1.11 7.81 -51.93 -0.41 0.71 16 42 H 0.08 1.54 7.55 -51.93 -0.39 1.14 16 43 H 0.39 9.69 7.76 -40.82 -0.32 9.37 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -31.28 360.75 -7.84 -39.12 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.52 Total: 8.17 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.34 Total: 1.28 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.11 Total: -53.55 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.28 Total: -16.87 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.28 -7.84 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054935364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.794 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds