Wall clock time and date at job start Tue Mar 31 2020 12:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.51683 * 2 1 4 4 C 1.53281 * 109.51697 * 239.89356 * 2 1 3 5 5 N 1.47169 * 108.55689 * 186.99672 * 4 2 1 6 6 C 1.34767 * 121.07861 * 230.98774 * 5 4 2 7 7 O 1.21613 * 120.00247 * 356.47600 * 6 5 4 8 8 C 1.47384 * 120.00106 * 176.47731 * 6 5 4 9 9 C 1.47011 * 127.19362 * 218.28255 * 8 6 5 10 10 C 1.34186 * 105.95589 * 179.83429 * 9 8 6 11 11 O 1.34220 * 109.12010 * 0.43314 * 10 9 8 12 12 C 1.33649 * 110.90654 * 359.71302 * 11 10 9 13 13 C 1.47329 * 117.83959 * 51.25802 * 5 4 2 14 14 C 1.52365 * 108.43381 * 310.84368 * 13 5 4 15 15 C 1.54364 * 110.40444 * 173.50788 * 14 13 5 16 16 C 1.54468 * 102.87287 * 152.39238 * 15 14 13 17 17 N 1.47077 * 107.29592 * 338.50354 * 16 15 14 18 18 C 1.36933 * 125.63281 * 178.99090 * 17 16 15 19 19 H 1.08005 * 120.00306 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99909 * 0.02562 * 18 17 16 21 21 N 1.31621 * 119.99677 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47269 * 90.00133 * 22 20 18 24 24 H 1.48499 * 109.47141 * 210.00589 * 22 20 18 25 25 H 1.48504 * 109.46780 * 330.00134 * 22 20 18 26 26 C 1.47574 * 108.73850 * 359.00513 * 17 16 15 27 27 O 1.41885 * 111.46531 * 49.98822 * 14 13 5 28 28 H 1.08993 * 109.47219 * 180.10064 * 1 2 3 29 29 H 1.08994 * 109.47452 * 300.11063 * 1 2 3 30 30 H 1.09003 * 109.46442 * 60.10462 * 1 2 3 31 31 H 1.08992 * 109.62209 * 67.27579 * 4 2 1 32 32 H 1.09005 * 109.77385 * 306.80872 * 4 2 1 33 33 H 1.08002 * 127.02486 * 359.97438 * 9 8 6 34 34 H 1.07992 * 125.44039 * 180.14955 * 10 9 8 35 35 H 1.08001 * 125.79979 * 180.02562 * 12 11 10 36 36 H 1.08996 * 109.64676 * 70.52723 * 13 5 4 37 37 H 1.09006 * 109.64529 * 191.16322 * 13 5 4 38 38 H 1.09000 * 110.73316 * 270.73384 * 15 14 13 39 39 H 1.09003 * 110.73579 * 34.04560 * 15 14 13 40 40 H 1.09000 * 109.87906 * 97.92707 * 16 15 14 41 41 H 1.09000 * 109.87804 * 218.92401 * 16 15 14 42 42 H 0.97008 * 119.99686 * 179.97438 * 21 20 18 43 43 H 1.09004 * 110.37989 * 264.48962 * 26 17 16 44 44 H 1.08999 * 110.37556 * 142.14763 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0421 -0.7247 -1.2498 5 7 3.5038 -0.8611 -1.1463 6 6 4.3115 -0.4769 -2.1543 7 8 3.8330 -0.0686 -3.1951 8 6 5.7749 -0.5517 -1.9955 9 6 6.7725 0.4091 -2.4883 10 6 7.9662 -0.0700 -2.1061 11 8 7.7855 -1.2232 -1.4436 12 6 6.4870 -1.5300 -1.3656 13 6 4.0550 -1.4369 0.0928 14 6 3.4226 -0.7208 1.2797 15 6 3.8443 -1.3957 2.6024 16 6 3.7652 -0.2367 3.6206 17 7 3.8528 1.0195 2.8608 18 6 3.8005 2.2797 3.3941 19 1 3.8736 3.1427 2.7488 20 6 3.6535 2.4480 4.7642 21 7 3.5649 1.3962 5.5506 22 14 3.5813 4.1669 5.4917 23 1 2.1703 4.6275 5.5346 24 1 4.1371 4.1454 6.8686 25 1 4.3795 5.0944 4.6502 26 6 4.0061 0.6978 1.4288 27 8 2.0089 -0.6769 1.1666 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3634 0.5155 0.8889 30 1 -0.3632 0.5122 -0.8910 31 1 1.7906 -0.1450 -2.1379 32 1 1.5860 -1.7125 -1.3162 33 1 6.5832 1.3164 -3.0427 34 1 8.9204 0.3955 -2.3041 35 1 6.0720 -2.4037 -0.8851 36 1 3.8201 -2.5002 0.1389 37 1 5.1357 -1.2959 0.1133 38 1 3.1485 -2.1913 2.8687 39 1 4.8623 -1.7791 2.5326 40 1 2.8179 -0.2795 4.1580 41 1 4.5942 -0.3051 4.3251 42 1 3.4625 1.5139 6.5081 43 1 5.0594 0.7064 1.1484 44 1 3.4444 1.4052 0.8186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071136470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:55 Heat of formation + Delta-G solvation = -12.610498 kcal Electronic energy + Delta-G solvation = -28665.760455 eV Core-core repulsion = 24779.723418 eV Total energy + Delta-G solvation = -3886.037036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.69316 -40.48938 -38.63538 -36.23677 -34.82325 -33.27934 -32.79958 -31.37550 -30.08694 -29.43540 -28.29054 -26.67273 -25.81202 -23.92948 -23.00852 -21.71851 -21.60009 -20.26436 -19.78461 -19.14426 -17.83022 -16.97059 -16.88981 -16.39328 -16.18634 -15.89850 -15.17749 -14.87005 -14.67571 -14.49138 -14.03539 -13.85127 -13.47695 -13.40013 -13.05257 -12.98362 -12.57302 -12.36131 -12.18645 -12.10834 -12.00099 -11.75749 -11.54538 -11.03063 -10.87283 -10.87193 -10.45844 -10.27880 -10.25835 -10.09698 -9.94491 -9.78475 -9.69162 -9.55557 -8.88971 -8.58767 -8.38371 -6.82070 -5.70756 -3.03531 1.30728 1.99803 2.64970 2.86459 3.13945 3.40321 3.45343 3.47023 3.87643 4.34647 4.48199 4.49818 4.73211 4.83799 4.90635 5.05146 5.12509 5.19632 5.29559 5.38882 5.47568 5.52352 5.53165 5.54804 5.62756 5.71860 5.75570 5.79614 5.84506 6.10119 6.12106 6.12934 6.20546 6.35670 6.39906 6.44739 6.54248 6.60778 6.82123 7.27733 7.53377 7.61751 7.68580 7.83463 8.08596 8.25867 9.22347 9.81993 10.47537 11.41107 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.004746 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.041757 B = 5897.955777 C = 6949.899077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.068 0.932 4 C 0.087 3.913 5 N -0.606 5.606 6 C 0.592 3.408 7 O -0.540 6.540 8 C -0.226 4.226 9 C -0.168 4.168 10 C -0.036 4.036 11 O -0.173 6.173 12 C 0.011 3.989 13 C 0.077 3.923 14 C 0.092 3.908 15 C -0.130 4.130 16 C 0.182 3.818 17 N -0.597 5.597 18 C -0.227 4.227 19 H 0.075 0.925 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.121 3.879 27 O -0.346 6.346 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.158 0.842 34 H 0.209 0.791 35 H 0.214 0.786 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.252 0.748 43 H 0.022 0.978 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 -8.564 -13.828 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.086 0.914 4 C -0.036 4.036 5 N -0.338 5.338 6 C 0.381 3.619 7 O -0.418 6.418 8 C -0.231 4.231 9 C -0.187 4.187 10 C -0.102 4.102 11 O -0.068 6.068 12 C -0.059 4.059 13 C -0.046 4.046 14 C 0.051 3.949 15 C -0.169 4.169 16 C 0.058 3.942 17 N -0.323 5.323 18 C -0.355 4.355 19 H 0.093 0.907 20 C -0.203 4.203 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.208 1.208 26 C -0.005 4.005 27 O -0.265 6.265 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.175 0.825 34 H 0.226 0.774 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.187 -8.481 -13.912 16.602 hybrid contribution -0.027 1.177 0.244 1.202 sum 3.160 -7.304 -13.668 15.816 Atomic orbital electron populations 1.21668 0.92365 1.02794 1.02857 1.22459 0.95374 0.96309 0.84599 0.91394 1.22395 0.79018 1.01921 1.00231 1.48043 1.06934 1.62485 1.16380 1.17311 0.84872 0.76852 0.82847 1.90765 1.76463 1.47229 1.27325 1.21413 0.94177 0.99597 1.07888 1.22728 0.90485 1.01365 1.04159 1.23938 1.00301 0.86815 0.99164 1.83805 1.26739 1.36436 1.59837 1.24583 0.80483 1.00630 1.00175 1.22722 1.00340 0.97939 0.83624 1.22300 0.81699 0.97002 0.93929 1.22860 1.00005 1.00094 0.93932 1.21154 1.01294 0.81243 0.90522 1.44394 1.85975 1.02518 0.99458 1.19016 1.43198 0.82531 0.90759 0.90693 1.24770 1.02146 0.97364 0.95982 1.69955 1.56431 1.26986 1.03468 0.86135 0.77681 0.83595 0.78458 1.21597 1.21630 1.20763 1.21907 0.96832 0.93083 0.88700 1.87843 1.19713 1.76615 1.42330 0.91875 0.91018 0.91192 0.88353 0.90703 0.82473 0.77443 0.76994 0.90361 0.88121 0.90758 0.90954 0.93153 0.93763 0.93756 0.96059 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.57 37.16 0.36 -1.40 16 2 C 0.07 1.09 3.20 -26.59 -0.08 1.01 16 3 H 0.07 1.19 6.26 -51.93 -0.32 0.86 16 4 C 0.09 1.18 5.89 -3.53 -0.02 1.16 16 5 N -0.61 -8.66 2.96 -173.98 -0.51 -9.17 16 6 C 0.59 9.17 7.66 -12.54 -0.10 9.07 16 7 O -0.54 -9.86 16.60 5.27 0.09 -9.77 16 8 C -0.23 -3.03 5.66 -103.28 -0.58 -3.61 16 9 C -0.17 -2.02 11.15 -37.46 -0.42 -2.43 16 10 C -0.04 -0.35 12.03 29.30 0.35 0.00 16 11 O -0.17 -1.87 10.52 7.65 0.08 -1.79 16 12 C 0.01 0.12 9.72 30.08 0.29 0.41 16 13 C 0.08 1.02 4.36 -3.91 -0.02 1.01 16 14 C 0.09 1.59 0.83 -89.65 -0.07 1.52 16 15 C -0.13 -2.31 6.12 -25.25 -0.15 -2.47 16 16 C 0.18 4.38 5.38 -2.96 -0.02 4.36 16 17 N -0.60 -15.30 3.40 -170.31 -0.58 -15.88 16 18 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 19 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 20 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -27.02 10.31 55.49 0.57 -26.45 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.12 2.55 6.19 -2.87 -0.02 2.53 16 27 O -0.35 -6.26 9.92 -35.22 -0.35 -6.61 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.35 7.10 -51.93 -0.37 0.98 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.21 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.21 1.63 6.72 -52.49 -0.35 1.28 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.24 4.02 -51.93 -0.21 1.03 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 40 H 0.05 1.37 7.39 -51.93 -0.38 0.98 16 41 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.02 0.45 7.81 -51.93 -0.41 0.05 16 44 H 0.04 0.87 6.10 -51.93 -0.32 0.55 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -34.57 350.12 -7.28 -41.85 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.09 Total: 0.95 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.73 Total: 4.34 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.52 Total: -51.50 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.18 Total: -18.17 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.57 -7.28 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071136470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.240 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds