Wall clock time and date at job start Tue Mar 31 2020 12:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.51683 * 2 1 4 4 C 1.53281 * 109.51697 * 239.89356 * 2 1 3 5 5 N 1.47169 * 108.55689 * 186.99672 * 4 2 1 6 6 C 1.34767 * 121.07861 * 230.98774 * 5 4 2 7 7 O 1.21613 * 120.00247 * 356.47600 * 6 5 4 8 8 C 1.47384 * 120.00106 * 176.47731 * 6 5 4 9 9 C 1.47011 * 127.19362 * 218.28255 * 8 6 5 10 10 C 1.34186 * 105.95589 * 179.83429 * 9 8 6 11 11 O 1.34220 * 109.12010 * 0.43314 * 10 9 8 12 12 C 1.33649 * 110.90654 * 359.71302 * 11 10 9 13 13 C 1.47329 * 117.83959 * 51.25802 * 5 4 2 14 14 C 1.52365 * 108.43381 * 310.84368 * 13 5 4 15 15 C 1.54364 * 110.40444 * 173.50788 * 14 13 5 16 16 C 1.54468 * 102.87287 * 152.39238 * 15 14 13 17 17 N 1.47077 * 107.29592 * 338.50354 * 16 15 14 18 18 C 1.36933 * 125.63281 * 178.99090 * 17 16 15 19 19 H 1.08005 * 120.00306 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99909 * 0.02562 * 18 17 16 21 21 N 1.31621 * 119.99677 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47269 * 90.00133 * 22 20 18 24 24 H 1.48499 * 109.47141 * 210.00589 * 22 20 18 25 25 H 1.48504 * 109.46780 * 330.00134 * 22 20 18 26 26 C 1.47574 * 108.73850 * 359.00513 * 17 16 15 27 27 O 1.41885 * 111.46531 * 49.98822 * 14 13 5 28 28 H 1.08993 * 109.47219 * 180.10064 * 1 2 3 29 29 H 1.08994 * 109.47452 * 300.11063 * 1 2 3 30 30 H 1.09003 * 109.46442 * 60.10462 * 1 2 3 31 31 H 1.08992 * 109.62209 * 67.27579 * 4 2 1 32 32 H 1.09005 * 109.77385 * 306.80872 * 4 2 1 33 33 H 1.08002 * 127.02486 * 359.97438 * 9 8 6 34 34 H 1.07992 * 125.44039 * 180.14955 * 10 9 8 35 35 H 1.08001 * 125.79979 * 180.02562 * 12 11 10 36 36 H 1.08996 * 109.64676 * 70.52723 * 13 5 4 37 37 H 1.09006 * 109.64529 * 191.16322 * 13 5 4 38 38 H 1.09000 * 110.73316 * 270.73384 * 15 14 13 39 39 H 1.09003 * 110.73579 * 34.04560 * 15 14 13 40 40 H 1.09000 * 109.87906 * 97.92707 * 16 15 14 41 41 H 1.09000 * 109.87804 * 218.92401 * 16 15 14 42 42 H 0.97008 * 119.99686 * 179.97438 * 21 20 18 43 43 H 1.09004 * 110.37989 * 264.48962 * 26 17 16 44 44 H 1.08999 * 110.37556 * 142.14763 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0421 -0.7247 -1.2498 5 7 3.5038 -0.8611 -1.1463 6 6 4.3115 -0.4769 -2.1543 7 8 3.8330 -0.0686 -3.1951 8 6 5.7749 -0.5517 -1.9955 9 6 6.7725 0.4091 -2.4883 10 6 7.9662 -0.0700 -2.1061 11 8 7.7855 -1.2232 -1.4436 12 6 6.4870 -1.5300 -1.3656 13 6 4.0550 -1.4369 0.0928 14 6 3.4226 -0.7208 1.2797 15 6 3.8443 -1.3957 2.6024 16 6 3.7652 -0.2367 3.6206 17 7 3.8528 1.0195 2.8608 18 6 3.8005 2.2797 3.3941 19 1 3.8736 3.1427 2.7488 20 6 3.6535 2.4480 4.7642 21 7 3.5649 1.3962 5.5506 22 14 3.5813 4.1669 5.4917 23 1 2.1703 4.6275 5.5346 24 1 4.1371 4.1454 6.8686 25 1 4.3795 5.0944 4.6502 26 6 4.0061 0.6978 1.4288 27 8 2.0089 -0.6769 1.1666 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3634 0.5155 0.8889 30 1 -0.3632 0.5122 -0.8910 31 1 1.7906 -0.1450 -2.1379 32 1 1.5860 -1.7125 -1.3162 33 1 6.5832 1.3164 -3.0427 34 1 8.9204 0.3955 -2.3041 35 1 6.0720 -2.4037 -0.8851 36 1 3.8201 -2.5002 0.1389 37 1 5.1357 -1.2959 0.1133 38 1 3.1485 -2.1913 2.8687 39 1 4.8623 -1.7791 2.5326 40 1 2.8179 -0.2795 4.1580 41 1 4.5942 -0.3051 4.3251 42 1 3.4625 1.5139 6.5081 43 1 5.0594 0.7064 1.1484 44 1 3.4444 1.4052 0.8186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071136470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:54 Heat of formation + Delta-G solvation = -36.463152 kcal Electronic energy + Delta-G solvation = -28666.794783 eV Core-core repulsion = 24779.723418 eV Total energy + Delta-G solvation = -3887.071365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.53324 -41.74701 -39.94768 -37.84426 -36.03402 -34.88329 -33.83702 -32.97514 -31.15839 -30.90174 -29.80573 -27.80960 -27.45905 -25.60963 -24.04284 -23.06617 -22.48183 -21.92824 -20.93304 -20.40728 -19.03800 -18.78100 -18.00867 -17.59969 -17.13111 -16.97728 -16.78357 -16.39365 -15.97456 -15.72601 -15.50130 -15.28189 -15.09726 -14.51406 -14.22160 -13.97972 -13.91353 -13.75424 -13.54101 -13.31028 -13.20061 -13.09306 -12.96231 -12.80759 -12.71598 -12.27103 -12.06824 -12.01317 -11.96519 -11.71587 -11.60374 -11.14155 -10.94535 -10.79358 -10.70694 -9.74059 -9.57349 -8.90196 -7.87211 -5.21941 0.41496 1.13350 1.42343 1.44228 1.52742 1.59284 2.04078 2.12554 2.46199 2.60636 3.30115 3.34773 3.43533 3.69704 3.71412 3.76257 3.86282 3.92821 3.99692 4.06484 4.18215 4.26109 4.43183 4.52018 4.54976 4.59599 4.62682 4.68696 4.72455 4.77434 4.93513 4.96952 4.97675 5.03236 5.07476 5.17828 5.29449 5.33286 5.39644 5.66823 5.77505 5.99865 6.16329 6.17956 6.34400 6.94922 7.09018 7.74706 8.38556 9.22799 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.004746 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.041757 B = 5897.955777 C = 6949.899077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.069 3.931 3 H 0.035 0.965 4 C 0.092 3.908 5 N -0.606 5.606 6 C 0.590 3.410 7 O -0.579 6.579 8 C -0.264 4.264 9 C -0.202 4.202 10 C -0.018 4.018 11 O -0.174 6.174 12 C 0.029 3.971 13 C 0.085 3.915 14 C 0.100 3.900 15 C -0.115 4.115 16 C 0.188 3.812 17 N -0.619 5.619 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.060 4.060 21 N -0.946 5.946 22 Si 0.975 3.025 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.272 1.272 26 C 0.120 3.880 27 O -0.366 6.366 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.248 0.752 35 H 0.247 0.753 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.007 0.993 41 H 0.014 0.986 42 H 0.248 0.752 43 H 0.027 0.973 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.367 -10.285 -14.820 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.053 0.947 4 C -0.030 4.030 5 N -0.338 5.338 6 C 0.381 3.619 7 O -0.460 6.460 8 C -0.268 4.268 9 C -0.222 4.222 10 C -0.084 4.084 11 O -0.069 6.069 12 C -0.041 4.041 13 C -0.037 4.037 14 C 0.059 3.941 15 C -0.153 4.153 16 C 0.064 3.936 17 N -0.345 5.345 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.803 3.197 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.197 1.197 26 C -0.005 4.005 27 O -0.285 6.285 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.171 0.829 34 H 0.263 0.737 35 H 0.263 0.737 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.112 0.888 39 H 0.127 0.873 40 H 0.025 0.975 41 H 0.032 0.968 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.210 -10.214 -14.921 18.566 hybrid contribution -0.337 1.777 0.539 1.888 sum 3.872 -8.437 -14.382 17.118 Atomic orbital electron populations 1.21673 0.90363 1.04034 1.03032 1.22561 0.96956 0.94624 0.84728 0.94691 1.22371 0.78991 1.02907 0.98730 1.48113 1.07129 1.62140 1.16374 1.17640 0.85839 0.75980 0.82442 1.90733 1.77307 1.49040 1.28888 1.21462 0.93304 1.01618 1.10448 1.22921 0.91440 1.02000 1.05807 1.24611 1.00986 0.85773 0.97016 1.83848 1.26666 1.36685 1.59673 1.25114 0.80130 1.00413 0.98434 1.22774 1.00641 0.99245 0.81053 1.22232 0.81689 0.94564 0.95658 1.22766 1.02816 0.97846 0.91886 1.20913 0.97703 0.83294 0.91727 1.44675 1.85824 1.02288 1.01705 1.19328 1.42943 0.83927 0.91230 0.91112 1.25574 1.02316 1.01062 0.96352 1.70171 1.57261 1.28762 1.03253 0.85143 0.77589 0.79452 0.77537 1.21421 1.21481 1.19685 1.22053 0.96999 0.95543 0.85933 1.87824 1.20122 1.76719 1.43880 0.90035 0.92983 0.88894 0.88773 0.88094 0.82861 0.73655 0.73741 0.86318 0.86736 0.88849 0.87347 0.97512 0.96795 0.94266 0.95505 0.96030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.57 71.98 0.69 -2.55 16 2 C 0.07 2.10 3.20 30.69 0.10 2.20 16 3 H 0.04 1.28 6.26 -2.39 -0.01 1.26 16 4 C 0.09 2.35 5.89 86.35 0.51 2.86 16 5 N -0.61 -16.10 2.96 -822.60 -2.43 -18.53 16 6 C 0.59 17.68 7.66 86.65 0.66 18.34 16 7 O -0.58 -21.21 16.60 -4.07 -0.07 -21.27 16 8 C -0.26 -6.63 5.66 -18.99 -0.11 -6.74 16 9 C -0.20 -4.65 11.15 23.65 0.26 -4.39 16 10 C -0.02 -0.31 12.03 66.89 0.80 0.50 16 11 O -0.17 -3.17 10.52 4.46 0.05 -3.12 16 12 C 0.03 0.53 9.72 67.39 0.66 1.18 16 13 C 0.09 1.97 4.36 86.01 0.38 2.35 16 14 C 0.10 3.29 0.83 -10.16 -0.01 3.28 16 15 C -0.11 -3.84 6.12 31.56 0.19 -3.64 16 16 C 0.19 9.24 5.38 86.77 0.47 9.71 16 17 N -0.62 -32.52 3.40 -692.75 -2.36 -34.88 16 18 C -0.25 -14.25 10.28 84.04 0.86 -13.39 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 21 N -0.95 -57.35 10.31 21.65 0.22 -57.13 16 22 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 26 C 0.12 5.08 6.19 86.55 0.54 5.62 16 27 O -0.37 -12.89 9.92 -148.95 -1.48 -14.37 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 2.51 7.10 -2.39 -0.02 2.50 16 32 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.25 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.25 2.51 6.72 -2.91 -0.02 2.49 16 36 H 0.12 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.11 2.35 4.02 -2.38 -0.01 2.34 16 38 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.11 2.86 8.00 -2.39 -0.02 2.84 16 40 H 0.01 0.37 7.39 -2.39 -0.02 0.36 16 41 H 0.01 0.75 7.50 -2.39 -0.02 0.73 16 42 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 43 H 0.03 1.12 7.81 -2.39 -0.02 1.10 16 44 H 0.02 0.98 6.10 -2.39 -0.01 0.97 16 Total: -1.00 -79.93 350.12 3.45 -76.49 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.01 Total: 11.72 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.47 Total: 12.33 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -4.57 Total: -110.53 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.50 Total: -38.76 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -79.93 3.45 -76.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071136470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.024 kcal (2) G-P(sol) polarization free energy of solvation -79.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds