Wall clock time and date at job start Tue Mar 31 2020 12:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.87402 * 2 1 4 4 C 1.54327 * 110.01012 * 238.90489 * 2 1 3 5 5 H 1.08996 * 110.71695 * 336.67666 * 4 2 1 6 6 N 1.46497 * 110.71993 * 99.77315 * 4 2 1 7 7 C 1.34775 * 119.99911 * 204.99469 * 6 4 2 8 8 O 1.21687 * 120.00295 * 0.02562 * 7 6 4 9 9 C 1.46663 * 119.99924 * 180.02562 * 7 6 4 10 10 O 1.35391 * 126.11702 * 0.03407 * 9 7 6 11 11 C 1.34403 * 109.47519 * 179.97438 * 10 9 7 12 12 C 1.33902 * 108.55796 * 359.97438 * 11 10 9 13 13 C 1.35183 * 126.11792 * 179.71984 * 9 7 6 14 14 C 1.50735 * 130.57284 * 0.99563 * 13 9 7 15 15 C 1.53679 * 107.49862 * 163.70171 * 14 13 9 16 16 O 1.42900 * 109.97380 * 48.02020 * 15 14 13 17 17 C 1.43518 * 114.76657 * 287.61344 * 16 15 14 18 18 C 1.55155 * 102.93990 * 218.31502 * 4 2 1 19 19 C 1.54910 * 101.58186 * 35.50139 * 18 4 2 20 20 N 1.47015 * 109.88376 * 121.01554 * 2 1 3 21 21 C 1.36936 * 125.65322 * 298.49370 * 20 2 1 22 22 H 1.08005 * 119.99808 * 359.97438 * 21 20 2 23 23 C 1.38810 * 120.00640 * 179.97438 * 21 20 2 24 24 N 1.31625 * 119.99418 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00271 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47325 * 89.99936 * 25 23 21 27 27 H 1.48505 * 109.46874 * 209.99981 * 25 23 21 28 28 H 1.48496 * 109.46999 * 329.99736 * 25 23 21 29 29 H 1.08994 * 109.46997 * 300.43757 * 1 2 3 30 30 H 1.08998 * 109.46806 * 60.43424 * 1 2 3 31 31 H 1.08997 * 109.46615 * 180.43487 * 1 2 3 32 32 H 0.97001 * 120.00432 * 25.00685 * 6 4 2 33 33 H 1.08002 * 125.72152 * 180.02562 * 11 10 9 34 34 H 1.08999 * 110.02162 * 44.09727 * 14 13 9 35 35 H 1.08999 * 109.70416 * 283.13346 * 14 13 9 36 36 H 1.08998 * 109.39208 * 287.86354 * 15 14 13 37 37 H 1.09005 * 109.38478 * 168.16722 * 15 14 13 38 38 H 1.09006 * 109.82185 * 291.96338 * 17 16 15 39 39 H 1.08994 * 109.87873 * 171.06532 * 17 16 15 40 40 H 1.08999 * 111.00406 * 277.42751 * 18 4 2 41 41 H 1.09005 * 111.00498 * 153.57267 * 18 4 2 42 42 H 1.08998 * 110.36709 * 204.15043 * 19 18 4 43 43 H 1.09005 * 110.36466 * 81.82577 * 19 18 4 44 44 H 0.96997 * 119.99243 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7489 -1.2417 5 1 1.3104 -1.4471 -1.6178 6 7 2.4541 0.1970 -2.2880 7 6 2.4584 -0.1894 -3.5792 8 8 2.1330 -1.3238 -3.8760 9 6 2.8553 0.7574 -4.6266 10 8 3.2387 2.0420 -4.4375 11 6 3.5288 2.6024 -5.6243 12 6 3.3369 1.6894 -6.5849 13 6 2.9094 0.5017 -5.9529 14 6 2.5797 -0.7506 -6.7243 15 6 2.4272 -0.3567 -8.2018 16 8 3.5303 0.4567 -8.6065 17 6 3.5195 1.7908 -8.0778 18 6 3.2919 -1.5107 -0.6895 19 6 2.8177 -1.8762 0.7393 20 7 2.0301 -0.7124 1.1848 21 6 1.8024 -0.3541 2.4867 22 1 1.2098 0.5208 2.7103 23 6 2.3330 -1.1152 3.5192 24 7 3.0547 -2.1817 3.2467 25 14 2.0217 -0.6267 5.2951 26 1 0.7821 -1.2851 5.7796 27 1 3.1698 -1.0541 6.1345 28 1 1.8660 0.8475 5.3830 29 1 -0.3633 0.5206 0.8860 30 1 -0.3633 0.5071 -0.8938 31 1 -0.3632 -1.0276 0.0078 32 1 2.7133 1.1013 -2.0516 33 1 3.8617 3.6183 -5.7773 34 1 1.6475 -1.1803 -6.3575 35 1 3.3885 -1.4731 -6.6151 36 1 1.4995 0.2001 -8.3341 37 1 2.3976 -1.2573 -8.8152 38 1 2.6939 2.3542 -8.5129 39 1 4.4639 2.2863 -8.3025 40 1 4.1682 -0.8633 -0.6566 41 1 3.4922 -2.4073 -1.2760 42 1 3.6743 -2.0284 1.3959 43 1 2.1937 -2.7697 0.7149 44 1 3.4252 -2.7137 3.9682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088773622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:40 Heat of formation + Delta-G solvation = -36.150071 kcal Electronic energy + Delta-G solvation = -27143.668154 eV Core-core repulsion = 23256.610365 eV Total energy + Delta-G solvation = -3887.057789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.04518 -39.58321 -38.82656 -37.57865 -34.31327 -33.66278 -32.38335 -32.00855 -30.42958 -29.66987 -28.46176 -26.53814 -25.23034 -24.03593 -23.74807 -22.74467 -20.43217 -20.25511 -19.90714 -19.58280 -18.05741 -16.83189 -16.76701 -16.51563 -16.25378 -15.87762 -15.50014 -15.17401 -14.77819 -14.43108 -14.19197 -14.00304 -13.72694 -13.56823 -13.24762 -12.93297 -12.81698 -12.47556 -12.16614 -12.01329 -11.84381 -11.59507 -11.19593 -11.16619 -10.88839 -10.86909 -10.63471 -10.53928 -10.23661 -10.11287 -9.92975 -9.77743 -9.69439 -9.59072 -8.97359 -8.69167 -8.61175 -6.89998 -5.67561 -3.10525 0.92311 1.97550 2.50840 3.16213 3.25294 3.38489 3.43481 3.45347 3.47694 4.16974 4.37487 4.46775 4.61306 4.69736 4.90542 4.95763 5.00911 5.15964 5.26584 5.38918 5.39518 5.50568 5.53997 5.58879 5.61583 5.72399 5.78312 5.82170 6.07888 6.09657 6.19563 6.26624 6.30541 6.47223 6.51089 6.61417 6.67909 6.79684 6.82853 7.06477 7.48542 7.60088 7.60761 7.82865 8.16994 8.32919 9.18431 9.79202 10.42822 11.35902 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032355 B = 0.002606 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.183504 B =10741.918474 C =11019.238948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.133 3.867 5 H 0.097 0.903 6 N -0.702 5.702 7 C 0.600 3.400 8 O -0.520 6.520 9 C -0.058 4.058 10 O -0.166 6.166 11 C 0.012 3.988 12 C -0.240 4.240 13 C -0.089 4.089 14 C -0.086 4.086 15 C 0.063 3.937 16 O -0.380 6.380 17 C 0.136 3.864 18 C -0.154 4.154 19 C 0.153 3.847 20 N -0.595 5.595 21 C -0.221 4.221 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.282 1.282 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.403 0.597 33 H 0.211 0.789 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.015 0.985 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 9.009 -22.095 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.029 3.971 5 H 0.115 0.885 6 N -0.351 5.351 7 C 0.385 3.615 8 O -0.398 6.398 9 C -0.110 4.110 10 O -0.062 6.062 11 C -0.057 4.057 12 C -0.242 4.242 13 C -0.092 4.092 14 C -0.124 4.124 15 C -0.014 4.014 16 O -0.298 6.298 17 C 0.060 3.940 18 C -0.193 4.193 19 C 0.028 3.972 20 N -0.320 5.320 21 C -0.349 4.349 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.238 0.762 33 H 0.228 0.772 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.128 0.872 43 H 0.034 0.966 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.200 8.164 -21.870 23.345 hybrid contribution -0.255 0.887 1.172 1.492 sum -0.055 9.051 -20.699 22.591 Atomic orbital electron populations 1.22239 0.97778 1.01453 1.00008 1.20991 0.92670 0.94837 0.86811 0.94615 1.22258 0.97958 0.90696 0.86173 0.88491 1.45997 1.66971 1.16490 1.05611 1.16492 0.78209 0.85459 0.81335 1.90860 1.49057 1.18034 1.81809 1.21588 1.10396 0.83813 0.95164 1.84336 1.66123 1.23219 1.32533 1.23600 1.01661 0.99156 0.81325 1.21010 1.09634 0.94821 0.98719 1.20176 1.00340 0.96991 0.91676 1.20881 1.04070 0.93704 0.93698 1.22712 0.88993 0.95192 0.94508 1.87981 1.47370 1.23506 1.70936 1.21020 1.02463 0.84668 0.85863 1.23423 0.96655 0.99365 0.99879 1.21957 0.97377 0.88420 0.89424 1.44486 1.59087 1.28413 1.00041 1.19020 1.27105 1.08286 0.80468 0.90442 1.24792 1.00312 0.97398 0.98074 1.69795 1.39013 1.17931 1.30180 0.86074 0.77260 0.77722 0.84434 1.21628 1.21659 1.20721 0.92602 0.94352 0.92863 0.76198 0.77231 0.88339 0.89092 0.92807 0.88039 0.91578 0.87638 0.91882 0.91834 0.87250 0.96648 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.15 37.16 0.34 -2.54 16 2 C 0.16 3.11 3.47 -66.95 -0.23 2.88 16 3 H 0.04 0.71 7.72 -51.93 -0.40 0.31 16 4 C 0.13 2.43 2.84 -66.10 -0.19 2.25 16 5 H 0.10 1.87 7.26 -51.93 -0.38 1.49 16 6 N -0.70 -10.88 5.18 -53.34 -0.28 -11.16 16 7 C 0.60 9.52 7.78 -12.86 -0.10 9.42 16 8 O -0.52 -9.48 15.28 5.20 0.08 -9.40 16 9 C -0.06 -0.80 7.11 -37.27 -0.27 -1.06 16 10 O -0.17 -1.95 10.44 2.34 0.02 -1.93 16 11 C 0.01 0.10 12.06 29.21 0.35 0.46 16 12 C -0.24 -2.40 6.04 -105.02 -0.63 -3.04 16 13 C -0.09 -1.12 6.02 -104.58 -0.63 -1.75 16 14 C -0.09 -0.97 5.70 -27.51 -0.16 -1.13 16 15 C 0.06 0.56 6.75 37.51 0.25 0.81 16 16 O -0.38 -3.86 10.70 -35.23 -0.38 -4.24 16 17 C 0.14 1.07 7.27 36.03 0.26 1.34 16 18 C -0.15 -3.04 6.77 -24.58 -0.17 -3.21 16 19 C 0.15 3.71 5.89 -2.53 -0.01 3.69 16 20 N -0.60 -14.75 3.13 -162.57 -0.51 -15.25 16 21 C -0.22 -5.96 9.87 -15.06 -0.15 -6.11 16 22 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -26.52 10.09 55.49 0.56 -25.96 16 25 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.05 1.06 8.02 -51.93 -0.42 0.65 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 5.54 8.13 -40.82 -0.33 5.21 16 33 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.10 1.15 7.64 -51.93 -0.40 0.75 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.11 2.97 5.88 -51.93 -0.31 2.66 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -32.06 358.13 -7.97 -40.04 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.42 Total: 4.10 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.43 Total: 1.63 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.22 Total: -52.37 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.27 Total: -15.56 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.06 -7.97 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088773622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.885 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds