Wall clock time and date at job start Tue Mar 31 2020 12:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.87402 * 2 1 4 4 C 1.54327 * 110.01012 * 238.90489 * 2 1 3 5 5 H 1.08996 * 110.71695 * 336.67666 * 4 2 1 6 6 N 1.46497 * 110.71993 * 99.77315 * 4 2 1 7 7 C 1.34775 * 119.99911 * 204.99469 * 6 4 2 8 8 O 1.21687 * 120.00295 * 0.02562 * 7 6 4 9 9 C 1.46663 * 119.99924 * 180.02562 * 7 6 4 10 10 O 1.35391 * 126.11702 * 0.03407 * 9 7 6 11 11 C 1.34403 * 109.47519 * 179.97438 * 10 9 7 12 12 C 1.33902 * 108.55796 * 359.97438 * 11 10 9 13 13 C 1.35183 * 126.11792 * 179.71984 * 9 7 6 14 14 C 1.50735 * 130.57284 * 0.99563 * 13 9 7 15 15 C 1.53679 * 107.49862 * 163.70171 * 14 13 9 16 16 O 1.42900 * 109.97380 * 48.02020 * 15 14 13 17 17 C 1.43518 * 114.76657 * 287.61344 * 16 15 14 18 18 C 1.55155 * 102.93990 * 218.31502 * 4 2 1 19 19 C 1.54910 * 101.58186 * 35.50139 * 18 4 2 20 20 N 1.47015 * 109.88376 * 121.01554 * 2 1 3 21 21 C 1.36936 * 125.65322 * 298.49370 * 20 2 1 22 22 H 1.08005 * 119.99808 * 359.97438 * 21 20 2 23 23 C 1.38810 * 120.00640 * 179.97438 * 21 20 2 24 24 N 1.31625 * 119.99418 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00271 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47325 * 89.99936 * 25 23 21 27 27 H 1.48505 * 109.46874 * 209.99981 * 25 23 21 28 28 H 1.48496 * 109.46999 * 329.99736 * 25 23 21 29 29 H 1.08994 * 109.46997 * 300.43757 * 1 2 3 30 30 H 1.08998 * 109.46806 * 60.43424 * 1 2 3 31 31 H 1.08997 * 109.46615 * 180.43487 * 1 2 3 32 32 H 0.97001 * 120.00432 * 25.00685 * 6 4 2 33 33 H 1.08002 * 125.72152 * 180.02562 * 11 10 9 34 34 H 1.08999 * 110.02162 * 44.09727 * 14 13 9 35 35 H 1.08999 * 109.70416 * 283.13346 * 14 13 9 36 36 H 1.08998 * 109.39208 * 287.86354 * 15 14 13 37 37 H 1.09005 * 109.38478 * 168.16722 * 15 14 13 38 38 H 1.09006 * 109.82185 * 291.96338 * 17 16 15 39 39 H 1.08994 * 109.87873 * 171.06532 * 17 16 15 40 40 H 1.08999 * 111.00406 * 277.42751 * 18 4 2 41 41 H 1.09005 * 111.00498 * 153.57267 * 18 4 2 42 42 H 1.08998 * 110.36709 * 204.15043 * 19 18 4 43 43 H 1.09005 * 110.36466 * 81.82577 * 19 18 4 44 44 H 0.96997 * 119.99243 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7489 -1.2417 5 1 1.3104 -1.4471 -1.6178 6 7 2.4541 0.1970 -2.2880 7 6 2.4584 -0.1894 -3.5792 8 8 2.1330 -1.3238 -3.8760 9 6 2.8553 0.7574 -4.6266 10 8 3.2387 2.0420 -4.4375 11 6 3.5288 2.6024 -5.6243 12 6 3.3369 1.6894 -6.5849 13 6 2.9094 0.5017 -5.9529 14 6 2.5797 -0.7506 -6.7243 15 6 2.4272 -0.3567 -8.2018 16 8 3.5303 0.4567 -8.6065 17 6 3.5195 1.7908 -8.0778 18 6 3.2919 -1.5107 -0.6895 19 6 2.8177 -1.8762 0.7393 20 7 2.0301 -0.7124 1.1848 21 6 1.8024 -0.3541 2.4867 22 1 1.2098 0.5208 2.7103 23 6 2.3330 -1.1152 3.5192 24 7 3.0547 -2.1817 3.2467 25 14 2.0217 -0.6267 5.2951 26 1 0.7821 -1.2851 5.7796 27 1 3.1698 -1.0541 6.1345 28 1 1.8660 0.8475 5.3830 29 1 -0.3633 0.5206 0.8860 30 1 -0.3633 0.5071 -0.8938 31 1 -0.3632 -1.0276 0.0078 32 1 2.7133 1.1013 -2.0516 33 1 3.8617 3.6183 -5.7773 34 1 1.6475 -1.1803 -6.3575 35 1 3.3885 -1.4731 -6.6151 36 1 1.4995 0.2001 -8.3341 37 1 2.3976 -1.2573 -8.8152 38 1 2.6939 2.3542 -8.5129 39 1 4.4639 2.2863 -8.3025 40 1 4.1682 -0.8633 -0.6566 41 1 3.4922 -2.4073 -1.2760 42 1 3.6743 -2.0284 1.3959 43 1 2.1937 -2.7697 0.7149 44 1 3.4252 -2.7137 3.9682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088773622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:39 Heat of formation + Delta-G solvation = -57.915974 kcal Electronic energy + Delta-G solvation = -27144.611995 eV Core-core repulsion = 23256.610365 eV Total energy + Delta-G solvation = -3888.001629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.88282 -40.94585 -39.53515 -39.18617 -35.77460 -34.63085 -33.91173 -33.03197 -32.10603 -30.95042 -29.95501 -27.20928 -26.75507 -25.88937 -24.68150 -23.81636 -22.09709 -21.66065 -20.96744 -20.72428 -19.09980 -18.72110 -17.69680 -17.46904 -17.32419 -16.93453 -16.63827 -16.21112 -15.96231 -15.79789 -15.64733 -15.53976 -15.11403 -14.47825 -14.44428 -14.20239 -14.02275 -13.75414 -13.64243 -13.27666 -13.21798 -12.95222 -12.76947 -12.63592 -12.57850 -12.30404 -12.19431 -11.99450 -11.89056 -11.60116 -11.50291 -11.39820 -10.80652 -10.74135 -10.51594 -10.20627 -9.63667 -8.91587 -7.75674 -5.20880 -0.03226 1.20859 1.48084 1.49765 1.57217 1.59129 2.00504 2.11058 2.51608 2.83651 3.34933 3.39807 3.50348 3.65323 3.80139 3.80248 3.90192 3.94390 4.15277 4.20411 4.30623 4.37658 4.46736 4.52330 4.58552 4.61061 4.72310 4.76762 4.79590 4.81965 4.88930 4.97578 4.99694 5.04526 5.07730 5.27007 5.30125 5.48284 5.51803 5.58263 5.74835 5.78709 6.15158 6.29342 6.39263 6.95403 7.10273 7.77477 8.40989 9.26422 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032355 B = 0.002606 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.183504 B =10741.918474 C =11019.238948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.049 0.951 4 C 0.152 3.848 5 H 0.088 0.912 6 N -0.694 5.694 7 C 0.601 3.399 8 O -0.552 6.552 9 C -0.092 4.092 10 O -0.173 6.173 11 C 0.037 3.963 12 C -0.255 4.255 13 C -0.095 4.095 14 C -0.090 4.090 15 C 0.067 3.933 16 O -0.398 6.398 17 C 0.134 3.866 18 C -0.140 4.140 19 C 0.159 3.841 20 N -0.614 5.614 21 C -0.227 4.227 22 H 0.085 0.915 23 C -0.069 4.069 24 N -0.951 5.951 25 Si 0.979 3.021 26 H -0.290 1.290 27 H -0.296 1.296 28 H -0.267 1.267 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.414 0.586 33 H 0.261 0.739 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.078 0.922 43 H -0.012 1.012 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 11.952 -24.059 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.067 0.933 4 C 0.046 3.954 5 H 0.106 0.894 6 N -0.344 5.344 7 C 0.389 3.611 8 O -0.432 6.432 9 C -0.143 4.143 10 O -0.070 6.070 11 C -0.032 4.032 12 C -0.257 4.257 13 C -0.098 4.098 14 C -0.127 4.127 15 C -0.009 4.009 16 O -0.316 6.316 17 C 0.058 3.942 18 C -0.179 4.179 19 C 0.033 3.967 20 N -0.339 5.339 21 C -0.356 4.356 22 H 0.103 0.897 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.217 1.217 27 H -0.223 1.223 28 H -0.192 1.192 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.251 0.749 33 H 0.277 0.723 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.147 0.853 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.006 0.994 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.094 11.155 -23.865 26.344 hybrid contribution -0.206 0.047 1.663 1.676 sum -0.112 11.202 -22.202 24.868 Atomic orbital electron populations 1.22118 0.96330 1.00904 1.01202 1.21179 0.93677 0.94984 0.85747 0.93303 1.21833 0.96626 0.90676 0.86234 0.89394 1.45767 1.67163 1.16417 1.05055 1.16729 0.77323 0.85520 0.81522 1.90837 1.50445 1.19569 1.82341 1.21080 1.13706 0.84802 0.94689 1.84325 1.66307 1.22306 1.34038 1.24621 0.98329 1.00449 0.79758 1.21346 1.10149 0.93968 1.00218 1.20564 0.99217 0.98286 0.91705 1.20918 1.03005 0.93295 0.95532 1.22743 0.89271 0.96073 0.92852 1.87958 1.47863 1.24711 1.71100 1.21331 1.04623 0.83997 0.84278 1.23225 0.97472 1.00019 0.97212 1.21668 0.95755 0.87865 0.91404 1.44720 1.59578 1.28770 1.00823 1.19390 1.26340 1.08204 0.81668 0.89686 1.25619 1.00767 0.97742 1.01962 1.70042 1.40271 1.19045 1.30736 0.85062 0.76525 0.78011 0.79634 1.21675 1.22253 1.19186 0.93206 0.91289 0.94265 0.74947 0.72305 0.89382 0.90358 0.91621 0.86487 0.89467 0.85326 0.91323 0.91237 0.90373 0.99373 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.15 71.98 0.66 -4.62 16 2 C 0.15 5.97 3.47 45.35 0.16 6.13 16 3 H 0.05 1.84 7.72 -2.39 -0.02 1.82 16 4 C 0.15 5.51 2.84 46.18 0.13 5.64 16 5 H 0.09 3.41 7.26 -2.39 -0.02 3.39 16 6 N -0.69 -20.95 5.18 -440.90 -2.28 -23.24 16 7 C 0.60 18.93 7.78 86.44 0.67 19.60 16 8 O -0.55 -20.45 15.28 -4.31 -0.07 -20.52 16 9 C -0.09 -2.42 7.11 23.77 0.17 -2.25 16 10 O -0.17 -3.64 10.44 -14.55 -0.15 -3.79 16 11 C 0.04 0.50 12.06 66.83 0.81 1.31 16 12 C -0.26 -4.33 6.04 -20.12 -0.12 -4.45 16 13 C -0.09 -2.26 6.02 -19.84 -0.12 -2.38 16 14 C -0.09 -2.01 5.70 30.09 0.17 -1.84 16 15 C 0.07 1.09 6.75 72.21 0.49 1.58 16 16 O -0.40 -7.13 10.70 -148.98 -1.59 -8.73 16 17 C 0.13 1.62 7.27 71.25 0.52 2.14 16 18 C -0.14 -5.62 6.77 31.99 0.22 -5.41 16 19 C 0.16 7.98 5.89 86.86 0.51 8.49 16 20 N -0.61 -30.83 3.13 -668.24 -2.09 -32.92 16 21 C -0.23 -12.37 9.87 84.03 0.83 -11.54 16 22 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 23 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 24 N -0.95 -56.65 10.09 21.65 0.22 -56.43 16 25 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 29 H 0.05 1.84 8.02 -2.39 -0.02 1.82 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.41 10.74 8.13 -92.71 -0.75 9.99 16 33 H 0.26 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.09 2.11 7.64 -2.39 -0.02 2.09 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 37 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 42 H 0.08 4.45 5.88 -2.39 -0.01 4.44 16 43 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 44 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -71.79 358.13 1.88 -69.91 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.27 Total: 19.39 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 5.55 Total: 9.01 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -4.16 Total: -112.59 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.81 Total: -33.04 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.79 1.88 -69.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088773622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.994 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds