Wall clock time and date at job start Tue Mar 31 2020 13:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.91660 * 2 1 4 4 C 1.54913 * 111.00512 * 236.09964 * 2 1 3 5 5 N 1.47419 * 104.83224 * 204.91415 * 4 2 1 6 6 C 1.36936 * 125.64510 * 204.09083 * 5 4 2 7 7 H 1.08008 * 119.99721 * 180.02562 * 6 5 4 8 8 C 1.38809 * 120.00392 * 0.04363 * 6 5 4 9 9 N 1.31624 * 119.99994 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00138 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46882 * 90.00269 * 10 8 6 12 12 H 1.48500 * 109.46901 * 210.00147 * 10 8 6 13 13 H 1.48503 * 109.47075 * 329.99937 * 10 8 6 14 14 C 1.47023 * 108.70469 * 24.13227 * 5 4 2 15 15 C 1.54321 * 107.26716 * 358.93669 * 14 5 4 16 16 H 1.09002 * 110.71971 * 96.35661 * 15 14 5 17 17 C 1.53007 * 110.71605 * 219.44249 * 15 14 5 18 18 N 1.46493 * 109.47556 * 293.55043 * 17 15 14 19 19 C 1.34770 * 120.00341 * 180.02562 * 18 17 15 20 20 O 1.21288 * 119.99880 * 5.01795 * 19 18 17 21 21 C 1.50701 * 120.00199 * 185.02628 * 19 18 17 22 22 C 1.52998 * 115.55056 * 65.75140 * 21 19 18 23 23 F 1.39903 * 109.47232 * 54.91461 * 22 21 19 24 24 F 1.39900 * 109.47318 * 294.91432 * 22 21 19 25 25 F 1.39900 * 109.46966 * 174.91065 * 22 21 19 26 26 C 1.53005 * 117.49661 * 211.42158 * 21 19 18 27 27 C 1.52998 * 117.49651 * 280.07682 * 21 19 18 28 28 H 1.09000 * 109.46798 * 296.09544 * 1 2 3 29 29 H 1.09000 * 109.47300 * 56.09766 * 1 2 3 30 30 H 1.09001 * 109.46765 * 176.09401 * 1 2 3 31 31 H 1.09002 * 110.36593 * 86.07489 * 4 2 1 32 32 H 1.08999 * 110.46081 * 323.80364 * 4 2 1 33 33 H 0.96999 * 119.99742 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.87879 * 239.52112 * 14 5 4 35 35 H 1.08993 * 109.88086 * 118.35736 * 14 5 4 36 36 H 1.08998 * 109.46640 * 173.54838 * 17 15 14 37 37 H 1.09001 * 109.46997 * 53.55112 * 17 15 14 38 38 H 0.96998 * 120.00005 * 359.97438 * 18 17 15 39 39 H 1.09001 * 117.49693 * 214.99985 * 26 21 19 40 40 H 1.08996 * 117.49838 * 0.02562 * 26 21 19 41 41 H 1.08996 * 117.50171 * 359.97438 * 27 21 19 42 42 H 1.09008 * 117.49389 * 144.97326 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2004 5 7 3.4271 -1.2430 -0.7734 6 6 4.4640 -1.5666 -1.6073 7 1 5.4125 -1.8768 -1.1943 8 6 4.2961 -1.4956 -2.9834 9 7 3.1404 -1.1167 -3.4867 10 14 5.7108 -1.9363 -4.1210 11 1 5.6571 -3.3859 -4.4389 12 1 5.6004 -1.1499 -5.3758 13 1 6.9994 -1.6235 -3.4525 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2021 16 1 1.4479 -1.6633 1.4239 17 6 2.2351 0.0875 2.4338 18 7 2.7616 -0.7013 3.5503 19 6 2.9755 -0.1176 4.7461 20 8 2.6475 1.0364 4.9249 21 6 3.6222 -0.8985 5.8610 22 6 5.0758 -1.3109 5.6209 23 9 5.8385 -0.1774 5.3198 24 9 5.1348 -2.2103 4.5509 25 9 5.5835 -1.9220 6.7724 26 6 3.2131 -0.5540 7.2945 27 6 2.7368 -1.8608 6.6553 28 1 -0.3633 0.4520 0.9229 29 1 -0.3634 0.5732 -0.8529 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1560 -0.1719 -2.0837 32 1 1.4525 -1.6703 -1.4044 33 1 3.0233 -1.0667 -4.4483 34 1 4.2426 -0.5998 1.0598 35 1 3.6651 -2.2894 1.0398 36 1 1.2620 0.4967 2.7051 37 1 2.9224 0.9030 2.2091 38 1 2.9557 -1.6439 3.4292 39 1 3.9796 -0.6212 8.0665 40 1 2.4760 0.2372 7.4311 41 1 1.6865 -1.9287 6.3719 42 1 3.1899 -2.7879 7.0065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102396002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:39 Heat of formation + Delta-G solvation = -143.200005 kcal Electronic energy + Delta-G solvation = -28160.028132 eV Core-core repulsion = 23726.471570 eV Total energy + Delta-G solvation = -4433.556563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.36751 -47.92374 -47.80266 -40.30309 -38.22847 -36.91813 -34.79838 -32.97129 -30.76851 -29.54932 -27.59145 -26.07172 -25.28987 -23.72739 -23.13622 -22.38664 -20.65620 -19.85603 -19.53410 -18.78041 -18.57082 -18.34709 -16.84636 -16.48643 -16.05397 -15.48457 -15.04152 -14.87748 -14.68581 -14.47871 -14.35170 -14.27013 -14.03161 -13.97745 -13.75993 -13.74146 -13.15828 -12.80054 -12.69645 -12.59066 -12.13124 -11.95880 -11.57996 -11.51683 -11.31442 -11.26543 -11.15927 -10.88691 -10.80249 -10.36758 -10.13735 -10.01326 -9.92846 -9.77638 -9.41540 -9.11812 -8.65581 -6.84006 -5.65815 -3.07519 1.94349 2.48564 2.70925 2.94337 3.40050 3.41599 3.45250 3.47170 3.69764 3.92686 4.17730 4.33658 4.44840 4.49364 4.94001 5.02625 5.08235 5.20008 5.26288 5.30118 5.48420 5.50378 5.55064 5.71155 5.82479 6.01373 6.04980 6.16341 6.22427 6.31633 6.49889 6.57551 6.60651 6.75967 6.92247 7.32147 7.52056 7.62908 7.85387 7.95802 8.35753 9.21881 9.82549 10.47117 11.37976 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.003564 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.567434 B = 7854.167761 C = 9130.160706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.604 5.604 6 C -0.223 4.223 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.140 3.860 15 C -0.110 4.110 16 H 0.078 0.922 17 C 0.132 3.868 18 N -0.712 5.712 19 C 0.555 3.445 20 O -0.521 6.521 21 C -0.243 4.243 22 C 0.499 3.501 23 F -0.171 7.171 24 F -0.171 7.171 25 F -0.177 7.177 26 C -0.115 4.115 27 C -0.130 4.130 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.013 0.987 33 H 0.252 0.748 34 H 0.024 0.976 35 H 0.019 0.981 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.406 0.594 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 -1.221 21.119 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.035 3.965 5 N -0.330 5.330 6 C -0.351 4.351 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.571 5.571 10 Si 0.744 3.256 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.014 3.986 15 C -0.130 4.130 16 H 0.096 0.904 17 C 0.009 3.991 18 N -0.362 5.362 19 C 0.338 3.662 20 O -0.396 6.396 21 C -0.248 4.248 22 C 0.444 3.556 23 F -0.152 7.152 24 F -0.152 7.152 25 F -0.158 7.158 26 C -0.152 4.152 27 C -0.167 4.167 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.241 0.759 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.338 -0.393 20.964 21.232 hybrid contribution 1.208 -0.891 -0.788 1.696 sum -2.130 -1.284 20.176 20.328 Atomic orbital electron populations 1.21654 0.95445 1.01436 1.00677 1.22609 0.94622 0.99532 0.96310 0.90976 1.21985 0.84040 0.95883 0.94634 1.44478 1.10573 1.78995 0.98956 1.19085 0.91082 1.37717 0.87227 0.90531 1.24776 0.97287 1.01942 0.96590 1.69793 1.22442 1.53809 1.11040 0.86079 0.81274 0.77813 0.80386 1.21640 1.21630 1.20691 1.21334 0.93338 0.97201 0.86705 1.22509 0.98810 0.98143 0.93510 0.90389 1.21563 0.99130 0.94154 0.84276 1.46056 1.65275 1.14425 1.10490 1.18651 0.79150 0.86308 0.82127 1.90734 1.50990 1.16515 1.81407 1.22625 0.92919 1.10819 0.98421 1.19007 0.87310 0.75077 0.74218 1.93247 1.77920 1.50981 1.93048 1.93242 1.96818 1.68494 1.56646 1.93176 1.88821 1.83690 1.50109 1.23201 1.03443 0.99308 0.89260 1.23271 0.99830 0.94986 0.98634 0.93678 0.92608 0.92933 0.87582 0.96882 0.93738 0.95799 0.96311 0.91173 0.90975 0.75943 0.86445 0.85914 0.86302 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.31 37.16 0.35 -1.66 16 2 C -0.11 -2.00 3.09 -88.47 -0.27 -2.27 16 3 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 4 C 0.16 3.78 5.36 -2.53 -0.01 3.76 16 5 N -0.60 -15.36 3.39 -170.08 -0.58 -15.94 16 6 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 7 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 9 N -0.92 -26.73 10.09 55.49 0.56 -26.17 16 10 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 C 0.14 2.86 6.52 -3.06 -0.02 2.84 16 15 C -0.11 -1.80 2.48 -88.79 -0.22 -2.02 16 16 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 17 C 0.13 1.90 5.00 -4.04 -0.02 1.88 16 18 N -0.71 -9.17 5.30 -60.30 -0.32 -9.49 16 19 C 0.55 7.33 6.87 -10.99 -0.08 7.26 16 20 O -0.52 -8.53 16.71 5.55 0.09 -8.44 16 21 C -0.24 -2.45 2.02 -155.66 -0.31 -2.77 16 22 C 0.50 5.61 3.06 37.16 0.11 5.72 16 23 F -0.17 -2.30 17.13 2.25 0.04 -2.26 16 24 F -0.17 -2.07 16.57 2.25 0.04 -2.03 16 25 F -0.18 -1.75 15.90 2.25 0.04 -1.72 16 26 C -0.11 -0.86 9.48 -26.69 -0.25 -1.11 16 27 C -0.13 -0.85 9.69 -26.70 -0.26 -1.11 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 31 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 32 H 0.01 0.33 7.99 -51.93 -0.41 -0.08 16 33 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.02 0.50 7.76 -51.93 -0.40 0.10 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 38 H 0.41 4.70 7.70 -40.82 -0.31 4.39 16 39 H 0.12 0.71 7.63 -51.93 -0.40 0.31 16 40 H 0.12 0.93 8.00 -51.93 -0.42 0.52 16 41 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.12 0.60 7.93 -51.92 -0.41 0.19 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -31.82 356.58 -7.02 -38.84 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.99 Total: 0.97 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.24 Total: 3.74 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.34 Total: -51.60 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.11 Total: -6.01 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.82 -7.02 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102396002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.358 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds