Wall clock time and date at job start Tue Mar 31 2020 13:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47173 * 239.99662 * 2 1 3 5 5 C 1.50709 * 109.46806 * 65.00119 * 4 2 1 6 6 O 1.21273 * 120.00105 * 359.97438 * 5 4 2 7 7 N 1.34771 * 119.99597 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99851 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.56137 * 37.02703 * 8 7 5 10 10 C 1.54848 * 110.63131 * 160.10859 * 8 7 5 11 11 C 1.55844 * 103.45219 * 118.48848 * 10 8 7 12 12 H 1.08998 * 116.13031 * 159.15163 * 11 10 8 13 13 C 1.55847 * 105.06096 * 288.17803 * 11 10 8 14 14 C 1.54845 * 103.44945 * 71.82010 * 13 11 10 15 15 C 1.55849 * 110.62440 * 274.13283 * 8 7 5 16 16 H 1.08996 * 115.56320 * 82.69980 * 15 8 7 17 17 N 1.50241 * 101.04969 * 32.93563 * 11 10 8 18 18 C 1.36932 * 130.83604 * 126.00965 * 17 11 10 19 19 H 1.08002 * 119.99902 * 190.23674 * 18 17 11 20 20 C 1.38813 * 120.00166 * 10.23883 * 18 17 11 21 21 N 1.31623 * 119.99638 * 9.12611 * 20 18 17 22 22 Si 1.86796 * 120.00271 * 189.12211 * 20 18 17 23 23 H 1.48500 * 109.46860 * 84.98992 * 22 20 18 24 24 H 1.48498 * 109.47285 * 204.99137 * 22 20 18 25 25 H 1.48507 * 109.47110 * 324.99068 * 22 20 18 26 26 C 1.52998 * 109.47277 * 120.00050 * 2 1 3 27 27 F 1.39898 * 109.47550 * 59.99664 * 26 2 1 28 28 F 1.39903 * 109.47200 * 180.02562 * 26 2 1 29 29 F 1.39905 * 109.46923 * 299.99827 * 26 2 1 30 30 H 1.09006 * 109.46815 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47018 * 60.00109 * 1 2 3 32 32 H 1.09003 * 109.46832 * 300.00085 * 1 2 3 33 33 H 1.09000 * 109.47556 * 184.99806 * 4 2 1 34 34 H 1.09005 * 109.47143 * 305.00310 * 4 2 1 35 35 H 0.97000 * 120.00611 * 359.97438 * 7 5 4 36 36 H 1.09007 * 110.62276 * 236.98053 * 10 8 7 37 37 H 1.09006 * 110.62525 * 359.97438 * 10 8 7 38 38 H 1.09000 * 110.62645 * 190.31820 * 13 11 10 39 39 H 1.09005 * 110.62632 * 313.17393 * 13 11 10 40 40 H 1.09004 * 110.63374 * 241.51174 * 14 13 11 41 41 H 1.09003 * 110.62941 * 118.48854 * 14 13 11 42 42 H 0.97002 * 119.99535 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0109 1.0868 -2.3633 7 7 1.9844 -0.3920 -3.7001 8 6 1.5974 0.3649 -4.8932 9 1 1.6578 1.4365 -4.7031 10 6 2.4832 -0.0294 -6.1006 11 6 1.4623 -0.6097 -7.1251 12 1 1.7850 -0.6288 -8.1661 13 6 1.0281 -1.9832 -6.5304 14 6 0.1422 -1.5891 -5.3231 15 6 0.1617 -0.0310 -5.3527 16 1 -0.6539 0.4693 -4.8306 17 7 0.2504 0.2279 -6.8300 18 6 -0.5320 0.9923 -7.6537 19 1 -1.2695 1.6591 -7.2320 20 6 -0.3772 0.9102 -9.0307 21 7 0.3881 -0.0251 -9.5523 22 14 -1.2551 2.1268 -10.1436 23 1 -0.4393 3.3613 -10.2683 24 1 -1.4454 1.5215 -11.4862 25 1 -2.5786 2.4648 -9.5609 26 6 2.0400 -0.7212 1.2492 27 9 1.5737 -2.0402 1.2493 28 9 3.4391 -0.7207 1.2495 29 9 1.5737 -0.0617 2.3915 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7995 -1.2056 34 1 1.6053 -1.7199 -1.2951 35 1 2.4883 -1.2159 -3.7908 36 1 2.9838 0.8472 -6.5119 37 1 3.2109 -0.7877 -5.8115 38 1 0.4520 -2.5526 -7.2599 39 1 1.8982 -2.5517 -6.2019 40 1 0.5727 -1.9609 -4.3933 41 1 -0.8734 -1.9629 -5.4537 42 1 0.4966 -0.0822 -10.5145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109669304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:41 Heat of formation + Delta-G solvation = -154.253536 kcal Electronic energy + Delta-G solvation = -28170.437391 eV Core-core repulsion = 23736.401511 eV Total energy + Delta-G solvation = -4434.035880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.34617 -47.82724 -47.80614 -40.22799 -38.67255 -35.23101 -34.00245 -32.36885 -29.60516 -29.12709 -28.59051 -27.06680 -26.40378 -24.18919 -22.12108 -21.27355 -20.44395 -19.57961 -18.83566 -18.63692 -18.50188 -17.78186 -17.08018 -16.35822 -15.86523 -15.42327 -14.98091 -14.78171 -14.73243 -14.38991 -14.25070 -14.05283 -13.99699 -13.97309 -13.89665 -13.41201 -13.31363 -12.62243 -12.33726 -12.24940 -11.80752 -11.63708 -11.54976 -11.52736 -11.47322 -11.03979 -10.96201 -10.92510 -10.85207 -10.24980 -10.10756 -9.97747 -9.70657 -9.48256 -9.28855 -8.88577 -8.57218 -6.92464 -5.79408 -3.14536 2.47214 2.70859 3.21563 3.38167 3.43696 3.44611 3.61909 3.82780 3.84672 4.41969 4.43970 4.60143 4.81874 5.03308 5.15767 5.24198 5.26867 5.32686 5.48603 5.58519 5.69690 5.75281 5.79264 5.93640 6.01402 6.07135 6.09816 6.23707 6.28809 6.49528 6.54492 6.61320 6.76672 6.92926 6.96081 7.24181 7.50244 7.64489 7.75690 8.08441 8.36433 9.04632 9.68744 10.51062 11.33083 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.002858 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.353484 B = 9793.592765 C =10123.461890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 H 0.122 0.878 4 C -0.146 4.146 5 C 0.515 3.485 6 O -0.538 6.538 7 N -0.709 5.709 8 C 0.128 3.872 9 H 0.083 0.917 10 C -0.143 4.143 11 C 0.159 3.841 12 H 0.141 0.859 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.128 3.872 16 H 0.085 0.915 17 N -0.589 5.589 18 C -0.215 4.215 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.452 3.548 27 F -0.183 7.183 28 F -0.185 7.185 29 F -0.183 7.183 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.396 0.604 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 -4.744 18.293 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 H 0.140 0.860 4 C -0.186 4.186 5 C 0.300 3.700 6 O -0.416 6.416 7 N -0.359 5.359 8 C 0.023 3.977 9 H 0.101 0.899 10 C -0.183 4.183 11 C 0.053 3.947 12 H 0.158 0.842 13 C -0.171 4.171 14 C -0.170 4.170 15 C 0.019 3.981 16 H 0.103 0.897 17 N -0.309 5.309 18 C -0.343 4.343 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.565 5.565 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.398 3.602 27 F -0.164 7.164 28 F -0.167 7.167 29 F -0.164 7.164 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.231 0.769 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.463 -3.903 18.067 19.274 hybrid contribution -0.029 -0.056 -0.318 0.324 sum 5.434 -3.960 17.748 18.979 Atomic orbital electron populations 1.22017 0.90812 1.03448 1.05367 1.22155 1.00449 1.01615 0.89345 0.85969 1.21733 1.03708 1.00896 0.92251 1.20100 0.79804 0.85655 0.84409 1.90687 1.39870 1.24542 1.86501 1.46222 1.56571 1.27265 1.05885 1.22658 0.97013 0.95586 0.82478 0.89910 1.23306 0.97732 1.00633 0.96657 1.23406 0.85269 0.87464 0.98599 0.84161 1.22991 0.97737 0.99348 0.97058 1.22895 0.99322 0.97770 0.97008 1.23190 0.94143 0.93513 0.87234 0.89651 1.46456 1.29577 1.53749 1.01136 1.19014 1.13767 1.14553 0.86969 0.90440 1.24752 1.00657 0.98749 0.96356 1.69663 1.42703 1.33375 1.10794 0.86102 0.79065 0.80450 0.79955 1.21553 1.21726 1.20725 1.20709 0.75314 0.77736 0.86406 1.93170 1.88431 1.37990 1.96834 1.93177 1.30240 1.96436 1.96825 1.93177 1.88473 1.80754 1.53997 0.91804 0.88013 0.91545 0.87888 0.87655 0.76910 0.91692 0.92510 0.92331 0.93817 0.93212 0.93062 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.69 37.16 0.32 -1.24 16 2 C -0.12 -1.08 2.01 -90.62 -0.18 -1.26 16 3 H 0.12 1.17 7.96 -51.93 -0.41 0.75 16 4 C -0.15 -1.29 4.93 -27.88 -0.14 -1.43 16 5 C 0.51 6.56 7.54 -10.98 -0.08 6.48 16 6 O -0.54 -8.77 13.69 5.56 0.08 -8.70 16 7 N -0.71 -9.15 3.63 -51.40 -0.19 -9.34 16 8 C 0.13 2.21 3.08 -65.43 -0.20 2.01 16 9 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 10 C -0.14 -2.52 6.20 -24.24 -0.15 -2.67 16 11 C 0.16 3.45 4.63 -62.80 -0.29 3.16 16 12 H 0.14 3.50 5.89 -51.93 -0.31 3.19 16 13 C -0.13 -2.48 6.44 -24.24 -0.16 -2.64 16 14 C -0.13 -2.32 6.33 -24.24 -0.15 -2.47 16 15 C 0.13 2.57 5.35 -62.79 -0.34 2.23 16 16 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 17 N -0.59 -14.25 2.97 -145.81 -0.43 -14.68 16 18 C -0.22 -5.83 10.55 -15.06 -0.16 -5.99 16 19 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 20 C -0.01 -0.24 5.46 -17.43 -0.10 -0.34 16 21 N -0.92 -25.71 10.75 55.49 0.60 -25.12 16 22 Si 0.91 21.71 29.56 -169.99 -5.03 16.68 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.45 4.23 2.69 37.16 0.10 4.33 16 27 F -0.18 -1.77 16.37 2.25 0.04 -1.74 16 28 F -0.19 -1.79 16.71 2.25 0.04 -1.75 16 29 F -0.18 -1.85 16.80 2.25 0.04 -1.81 16 30 H 0.06 0.57 7.80 -51.93 -0.41 0.17 16 31 H 0.10 1.22 5.95 -51.93 -0.31 0.92 16 32 H 0.07 0.59 7.80 -51.93 -0.41 0.19 16 33 H 0.10 0.74 7.66 -51.93 -0.40 0.34 16 34 H 0.11 0.79 7.94 -51.93 -0.41 0.38 16 35 H 0.40 4.09 8.02 -40.82 -0.33 3.76 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.82 7.34 -51.93 -0.38 0.44 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.04 0.68 7.82 -51.93 -0.41 0.28 16 40 H 0.05 0.73 6.49 -51.93 -0.34 0.39 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -29.62 342.83 -6.95 -36.57 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.74 Total: 4.55 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.52 Total: 0.17 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.02 Total: -49.14 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.11 Total: -5.30 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.62 -6.95 -36.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109669304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.682 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds