Wall clock time and date at job start Tue Mar 31 2020 13:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47173 * 239.99662 * 2 1 3 5 5 C 1.50709 * 109.46806 * 65.00119 * 4 2 1 6 6 O 1.21273 * 120.00105 * 359.97438 * 5 4 2 7 7 N 1.34771 * 119.99597 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99851 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.56137 * 37.02703 * 8 7 5 10 10 C 1.54848 * 110.63131 * 160.10859 * 8 7 5 11 11 C 1.55844 * 103.45219 * 118.48848 * 10 8 7 12 12 H 1.08998 * 116.13031 * 159.15163 * 11 10 8 13 13 C 1.55847 * 105.06096 * 288.17803 * 11 10 8 14 14 C 1.54845 * 103.44945 * 71.82010 * 13 11 10 15 15 C 1.55849 * 110.62440 * 274.13283 * 8 7 5 16 16 H 1.08996 * 115.56320 * 82.69980 * 15 8 7 17 17 N 1.50241 * 101.04969 * 32.93563 * 11 10 8 18 18 C 1.36932 * 130.83604 * 126.00965 * 17 11 10 19 19 H 1.08002 * 119.99902 * 190.23674 * 18 17 11 20 20 C 1.38813 * 120.00166 * 10.23883 * 18 17 11 21 21 N 1.31623 * 119.99638 * 9.12611 * 20 18 17 22 22 Si 1.86796 * 120.00271 * 189.12211 * 20 18 17 23 23 H 1.48500 * 109.46860 * 84.98992 * 22 20 18 24 24 H 1.48498 * 109.47285 * 204.99137 * 22 20 18 25 25 H 1.48507 * 109.47110 * 324.99068 * 22 20 18 26 26 C 1.52998 * 109.47277 * 120.00050 * 2 1 3 27 27 F 1.39898 * 109.47550 * 59.99664 * 26 2 1 28 28 F 1.39903 * 109.47200 * 180.02562 * 26 2 1 29 29 F 1.39905 * 109.46923 * 299.99827 * 26 2 1 30 30 H 1.09006 * 109.46815 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47018 * 60.00109 * 1 2 3 32 32 H 1.09003 * 109.46832 * 300.00085 * 1 2 3 33 33 H 1.09000 * 109.47556 * 184.99806 * 4 2 1 34 34 H 1.09005 * 109.47143 * 305.00310 * 4 2 1 35 35 H 0.97000 * 120.00611 * 359.97438 * 7 5 4 36 36 H 1.09007 * 110.62276 * 236.98053 * 10 8 7 37 37 H 1.09006 * 110.62525 * 359.97438 * 10 8 7 38 38 H 1.09000 * 110.62645 * 190.31820 * 13 11 10 39 39 H 1.09005 * 110.62632 * 313.17393 * 13 11 10 40 40 H 1.09004 * 110.63374 * 241.51174 * 14 13 11 41 41 H 1.09003 * 110.62941 * 118.48854 * 14 13 11 42 42 H 0.97002 * 119.99535 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0109 1.0868 -2.3633 7 7 1.9844 -0.3920 -3.7001 8 6 1.5974 0.3649 -4.8932 9 1 1.6578 1.4365 -4.7031 10 6 2.4832 -0.0294 -6.1006 11 6 1.4623 -0.6097 -7.1251 12 1 1.7850 -0.6288 -8.1661 13 6 1.0281 -1.9832 -6.5304 14 6 0.1422 -1.5891 -5.3231 15 6 0.1617 -0.0310 -5.3527 16 1 -0.6539 0.4693 -4.8306 17 7 0.2504 0.2279 -6.8300 18 6 -0.5320 0.9923 -7.6537 19 1 -1.2695 1.6591 -7.2320 20 6 -0.3772 0.9102 -9.0307 21 7 0.3881 -0.0251 -9.5523 22 14 -1.2551 2.1268 -10.1436 23 1 -0.4393 3.3613 -10.2683 24 1 -1.4454 1.5215 -11.4862 25 1 -2.5786 2.4648 -9.5609 26 6 2.0400 -0.7212 1.2492 27 9 1.5737 -2.0402 1.2493 28 9 3.4391 -0.7207 1.2495 29 9 1.5737 -0.0617 2.3915 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7995 -1.2056 34 1 1.6053 -1.7199 -1.2951 35 1 2.4883 -1.2159 -3.7908 36 1 2.9838 0.8472 -6.5119 37 1 3.2109 -0.7877 -5.8115 38 1 0.4520 -2.5526 -7.2599 39 1 1.8982 -2.5517 -6.2019 40 1 0.5727 -1.9609 -4.3933 41 1 -0.8734 -1.9629 -5.4537 42 1 0.4966 -0.0822 -10.5145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109669304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:40 Heat of formation + Delta-G solvation = -171.253097 kcal Electronic energy + Delta-G solvation = -28171.174547 eV Core-core repulsion = 23736.401511 eV Total energy + Delta-G solvation = -4434.773036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.08296 -48.57142 -48.53868 -41.51159 -39.99247 -36.10556 -35.35338 -34.19456 -31.03462 -30.85563 -29.86198 -28.27627 -27.20661 -26.03151 -23.18868 -22.53698 -21.65359 -21.06615 -20.12527 -19.58487 -19.32009 -18.85109 -18.55210 -17.41906 -16.86609 -16.80555 -16.57991 -16.10509 -15.78376 -15.51947 -15.37918 -15.01880 -14.97950 -14.72981 -14.68169 -14.47805 -14.25911 -14.03925 -13.79757 -13.45218 -13.27956 -13.14938 -12.82780 -12.78856 -12.59500 -12.39443 -12.32251 -12.26174 -12.21838 -11.97856 -11.89067 -11.58824 -11.28739 -10.88574 -10.81289 -10.67868 -9.93008 -8.82154 -7.84050 -5.19326 1.45940 1.47435 1.54799 1.68074 1.73260 2.23532 2.50595 2.85907 3.05671 3.10092 3.31877 3.53978 3.65449 3.89301 3.91644 4.04797 4.13027 4.18681 4.29776 4.44996 4.49907 4.57944 4.60518 4.64447 4.73187 4.81922 4.83681 4.97026 5.01731 5.10055 5.16526 5.23156 5.32757 5.37665 5.49709 5.59826 5.78777 5.89386 6.22483 6.68277 7.03207 7.37379 7.68451 8.56792 9.26220 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.002858 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.353484 B = 9793.592765 C =10123.461890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 H 0.118 0.882 4 C -0.136 4.136 5 C 0.515 3.485 6 O -0.576 6.576 7 N -0.698 5.698 8 C 0.150 3.850 9 H 0.057 0.943 10 C -0.127 4.127 11 C 0.143 3.857 12 H 0.104 0.896 13 C -0.122 4.122 14 C -0.116 4.116 15 C 0.119 3.881 16 H 0.066 0.934 17 N -0.619 5.619 18 C -0.228 4.228 19 H 0.068 0.932 20 C -0.060 4.060 21 N -0.940 5.940 22 Si 0.971 3.029 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.276 1.276 26 C 0.460 3.540 27 F -0.182 7.182 28 F -0.185 7.185 29 F -0.188 7.188 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.416 0.584 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.028 0.972 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.035 0.965 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.414 -6.192 20.305 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.134 4.134 3 H 0.136 0.864 4 C -0.175 4.175 5 C 0.303 3.697 6 O -0.456 6.456 7 N -0.351 5.351 8 C 0.042 3.958 9 H 0.075 0.925 10 C -0.167 4.167 11 C 0.037 3.963 12 H 0.122 0.878 13 C -0.161 4.161 14 C -0.156 4.156 15 C 0.011 3.989 16 H 0.084 0.916 17 N -0.341 5.341 18 C -0.357 4.357 19 H 0.086 0.914 20 C -0.253 4.253 21 N -0.588 5.588 22 Si 0.800 3.200 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.202 1.202 26 C 0.406 3.594 27 F -0.164 7.164 28 F -0.166 7.166 29 F -0.170 7.170 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.254 0.746 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.054 0.946 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.872 -5.387 20.127 21.939 hybrid contribution -0.481 0.417 -0.863 1.072 sum 6.392 -4.970 19.264 20.896 Atomic orbital electron populations 1.21955 0.91356 1.03771 1.04358 1.22109 0.99989 1.01619 0.89709 0.86410 1.21739 1.05473 1.00913 0.89417 1.20761 0.78601 0.85241 0.85136 1.90697 1.41405 1.26482 1.87037 1.45964 1.56809 1.27674 1.04634 1.22030 0.94986 0.94733 0.84012 0.92489 1.23133 0.97312 1.01022 0.95215 1.23365 0.85688 0.89128 0.98139 0.87804 1.22890 0.99025 0.97694 0.96462 1.22806 0.98760 0.95550 0.98437 1.23335 0.95383 0.95152 0.85050 0.91585 1.46726 1.30398 1.54162 1.02818 1.19235 1.13818 1.14737 0.87897 0.91377 1.25428 1.01962 1.00487 0.97463 1.69857 1.43945 1.34619 1.10411 0.85200 0.78238 0.78467 0.78057 1.21458 1.21913 1.20186 1.20579 0.75220 0.77580 0.86046 1.93174 1.88431 1.37939 1.96813 1.93182 1.30210 1.96429 1.96803 1.93171 1.88559 1.80909 1.54329 0.90796 0.90410 0.91174 0.85219 0.85268 0.74623 0.93124 0.88167 0.95324 0.89367 0.89015 0.94622 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.69 71.98 0.63 -2.18 16 2 C -0.11 -1.83 2.01 -10.79 -0.02 -1.85 16 3 H 0.12 2.02 7.96 -2.39 -0.02 2.01 16 4 C -0.14 -1.86 4.93 29.85 0.15 -1.71 16 5 C 0.52 11.67 7.54 87.66 0.66 12.33 16 6 O -0.58 -18.23 13.69 -3.01 -0.04 -18.27 16 7 N -0.70 -15.57 3.63 -434.92 -1.58 -17.15 16 8 C 0.15 4.93 3.08 46.61 0.14 5.08 16 9 H 0.06 2.20 7.70 -2.39 -0.02 2.19 16 10 C -0.13 -4.24 6.20 32.21 0.20 -4.04 16 11 C 0.14 6.17 4.63 46.23 0.21 6.38 16 12 H 0.10 5.32 5.89 -2.39 -0.01 5.31 16 13 C -0.12 -4.35 6.44 32.21 0.21 -4.14 16 14 C -0.12 -3.90 6.33 32.21 0.20 -3.70 16 15 C 0.12 4.73 5.35 46.23 0.25 4.98 16 16 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 17 N -0.62 -30.67 2.97 -615.21 -1.83 -32.50 16 18 C -0.23 -12.79 10.55 84.03 0.89 -11.90 16 19 H 0.07 3.81 7.85 -2.91 -0.02 3.78 16 20 C -0.06 -3.36 5.46 84.86 0.46 -2.89 16 21 N -0.94 -54.36 10.75 21.65 0.23 -54.12 16 22 Si 0.97 45.84 29.56 68.60 2.03 47.87 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 C 0.46 7.27 2.69 71.98 0.19 7.46 16 27 F -0.18 -2.92 16.37 44.97 0.74 -2.18 16 28 F -0.18 -2.98 16.71 44.97 0.75 -2.23 16 29 F -0.19 -3.42 16.80 44.97 0.76 -2.66 16 30 H 0.07 1.14 7.80 -2.38 -0.02 1.12 16 31 H 0.08 1.82 5.95 -2.39 -0.01 1.80 16 32 H 0.07 1.17 7.80 -2.39 -0.02 1.15 16 33 H 0.13 1.19 7.66 -2.39 -0.02 1.17 16 34 H 0.13 1.26 7.94 -2.38 -0.02 1.24 16 35 H 0.42 6.26 8.02 -92.71 -0.74 5.51 16 36 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.10 2.45 7.34 -2.38 -0.02 2.43 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 2.36 7.82 -2.38 -0.02 2.35 16 40 H 0.09 2.29 6.49 -2.39 -0.02 2.28 16 41 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -68.02 342.83 5.54 -62.48 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.31 Total: 14.92 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 4.17 Total: 3.83 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -3.18 Total: -103.77 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.04 Total: -18.27 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 2.24 Total: -7.07 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -68.02 5.54 -62.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109669304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.772 kcal (2) G-P(sol) polarization free energy of solvation -68.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds