Wall clock time and date at job start Tue Mar 31 2020 13:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46453 * 2 1 4 4 C 1.52999 * 109.47294 * 239.99659 * 2 1 3 5 5 C 1.50698 * 109.47004 * 64.99627 * 4 2 1 6 6 O 1.21283 * 120.00472 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99538 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99665 * 179.72653 * 7 5 4 9 9 H 1.08997 * 110.56159 * 34.57939 * 8 7 5 10 10 C 1.54856 * 110.62840 * 271.67421 * 8 7 5 11 11 C 1.55835 * 103.45071 * 241.51146 * 10 8 7 12 12 H 1.09001 * 115.56506 * 159.56149 * 11 10 8 13 13 C 1.55850 * 105.06473 * 288.17751 * 11 10 8 14 14 C 1.54853 * 103.44817 * 71.82111 * 13 11 10 15 15 C 1.55771 * 103.59270 * 359.94272 * 14 13 11 16 16 H 1.08997 * 115.64832 * 159.69118 * 15 14 13 17 17 N 1.50247 * 101.04961 * 32.93638 * 11 10 8 18 18 C 1.36930 * 130.83583 * 126.01151 * 17 11 10 19 19 H 1.08006 * 119.99999 * 180.02562 * 18 17 11 20 20 C 1.38811 * 120.00514 * 0.03226 * 18 17 11 21 21 N 1.31617 * 119.99824 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00401 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46998 * 89.99414 * 22 20 18 24 24 H 1.48494 * 109.47174 * 209.99572 * 22 20 18 25 25 H 1.48497 * 109.46663 * 329.99697 * 22 20 18 26 26 C 1.52996 * 109.46980 * 119.99152 * 2 1 3 27 27 F 1.39901 * 109.47234 * 180.02562 * 26 2 1 28 28 F 1.39898 * 109.47655 * 300.00671 * 26 2 1 29 29 F 1.39909 * 109.46988 * 60.00308 * 26 2 1 30 30 H 1.09002 * 109.47039 * 60.00967 * 1 2 3 31 31 H 1.09008 * 109.46770 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47528 * 300.00016 * 1 2 3 33 33 H 1.09003 * 109.46690 * 304.99977 * 4 2 1 34 34 H 1.08993 * 109.46773 * 185.00313 * 4 2 1 35 35 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 36 36 H 1.09006 * 110.62680 * 0.02562 * 10 8 7 37 37 H 1.09000 * 110.62567 * 122.85982 * 10 8 7 38 38 H 1.09003 * 110.62395 * 190.31114 * 13 11 10 39 39 H 1.09004 * 110.62273 * 313.33351 * 13 11 10 40 40 H 1.09002 * 110.62698 * 118.48566 * 14 13 11 41 41 H 1.08998 * 110.62915 * 241.35432 * 14 13 11 42 42 H 0.97003 * 120.00241 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 8 1.0117 1.0872 -2.3634 7 7 1.9854 -0.3917 -3.7000 8 6 1.5926 0.3616 -4.8935 9 1 1.6058 1.4327 -4.6917 10 6 0.1930 -0.0840 -5.3838 11 6 0.4696 -0.6400 -6.8131 12 1 -0.2890 -1.3143 -7.2104 13 6 0.7759 0.6157 -7.6839 14 6 2.1755 1.0613 -7.1937 15 6 2.5271 0.0174 -6.0923 16 1 3.5861 -0.0758 -5.8514 17 7 1.8479 -1.2119 -6.6378 18 6 2.3367 -2.4649 -6.8946 19 1 3.3749 -2.6900 -6.6996 20 6 1.4980 -3.4459 -7.4057 21 7 0.2328 -3.1718 -7.6429 22 14 2.1651 -5.1551 -7.7567 23 1 2.0120 -6.0041 -6.5480 24 1 1.4108 -5.7588 -8.8844 25 1 3.6027 -5.0610 -8.1167 26 6 2.0400 -0.7210 1.2493 27 9 3.4390 -0.7206 1.2497 28 9 1.5736 -0.0616 2.3916 29 9 1.5737 -2.0401 1.2494 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2054 35 1 2.4894 -1.2156 -3.7906 36 1 -0.2091 -0.8652 -4.7387 37 1 -0.4880 0.7661 -5.4250 38 1 0.8053 0.3518 -8.7411 39 1 0.0386 1.3978 -7.5026 40 1 2.8991 1.0184 -8.0078 41 1 2.1330 2.0654 -6.7719 42 1 -0.3532 -3.8571 -8.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110976894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:44 Heat of formation + Delta-G solvation = -159.558025 kcal Electronic energy + Delta-G solvation = -28213.425747 eV Core-core repulsion = 23779.159847 eV Total energy + Delta-G solvation = -4434.265900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.25909 -47.74567 -47.71331 -39.99304 -38.65335 -35.15643 -33.83813 -32.57634 -29.35311 -29.13743 -28.48935 -27.08969 -26.32444 -24.23523 -22.21110 -21.05071 -19.97057 -19.77339 -18.80809 -18.60602 -18.41706 -17.66684 -17.06099 -16.27116 -15.99328 -15.42474 -14.85798 -14.73458 -14.58278 -14.19375 -14.15444 -14.01550 -13.89984 -13.85730 -13.71996 -13.34573 -13.26719 -12.85911 -12.36271 -12.09335 -11.87904 -11.55240 -11.51506 -11.40736 -11.21716 -11.16056 -10.97499 -10.93731 -10.56958 -10.40761 -10.13626 -9.97062 -9.75873 -9.28661 -9.19802 -9.01473 -8.53249 -7.00292 -5.79430 -3.18605 2.56406 2.82957 3.32861 3.35844 3.38352 3.40479 3.71377 3.91455 3.97265 4.35988 4.53628 4.70349 4.94731 5.05879 5.16155 5.31117 5.36341 5.40643 5.58911 5.64294 5.65592 5.78134 5.82866 6.00176 6.04799 6.09275 6.15411 6.26566 6.37227 6.44018 6.55239 6.69298 6.77739 6.89975 7.05435 7.26973 7.41842 7.74192 7.88927 8.10299 8.49631 9.02132 9.65315 10.46076 11.29683 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.003590 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.285644 B = 7797.227290 C = 8876.988629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 H 0.121 0.879 4 C -0.146 4.146 5 C 0.516 3.484 6 O -0.550 6.550 7 N -0.702 5.702 8 C 0.129 3.871 9 H 0.079 0.921 10 C -0.142 4.142 11 C 0.156 3.844 12 H 0.151 0.849 13 C -0.139 4.139 14 C -0.128 4.128 15 C 0.125 3.875 16 H 0.088 0.912 17 N -0.591 5.591 18 C -0.216 4.216 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 0.914 3.086 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.452 3.548 27 F -0.185 7.185 28 F -0.184 7.184 29 F -0.182 7.182 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.404 0.596 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 6.461 12.986 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.134 4.134 3 H 0.139 0.861 4 C -0.186 4.186 5 C 0.302 3.698 6 O -0.429 6.429 7 N -0.351 5.351 8 C 0.022 3.978 9 H 0.097 0.903 10 C -0.183 4.183 11 C 0.049 3.951 12 H 0.168 0.832 13 C -0.179 4.179 14 C -0.168 4.168 15 C 0.016 3.984 16 H 0.106 0.894 17 N -0.312 5.312 18 C -0.344 4.344 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.745 3.255 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.398 3.602 27 F -0.167 7.167 28 F -0.165 7.165 29 F -0.163 7.163 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.239 0.761 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.256 6.839 12.956 14.823 hybrid contribution 0.756 -1.445 0.029 1.631 sum 3.012 5.394 12.985 14.380 Atomic orbital electron populations 1.22009 0.90920 1.03481 1.05165 1.22141 1.00367 1.01501 0.89419 0.86075 1.21723 1.03756 1.01028 0.92136 1.20088 0.79648 0.85529 0.84531 1.90643 1.40687 1.24867 1.86699 1.46013 1.56118 1.27628 1.05328 1.22649 0.96630 0.94495 0.83983 0.90290 1.23453 0.94778 0.99339 1.00695 1.23690 0.89912 0.91178 0.90274 0.83176 1.23074 0.95279 0.98944 1.00579 1.22859 0.98160 0.97085 0.98654 1.23219 0.94950 0.88680 0.91535 0.89359 1.46620 1.05700 1.05978 1.72874 1.18997 0.94448 0.84945 1.36037 0.90407 1.24698 0.95737 0.98269 1.01766 1.69485 1.04103 1.32728 1.50338 0.86078 0.77801 0.84006 0.77607 1.21688 1.21682 1.20793 1.20713 0.75331 0.77800 0.86344 1.93176 1.30228 1.96439 1.96819 1.93168 1.88487 1.80780 1.54061 1.93179 1.88418 1.37927 1.96821 0.88111 0.91789 0.91632 0.87568 0.87885 0.76128 0.92261 0.92826 0.92610 0.93310 0.92444 0.93019 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 8.69 37.16 0.32 -1.40 16 2 C -0.11 -1.21 2.01 -90.62 -0.18 -1.39 16 3 H 0.12 1.26 7.95 -51.93 -0.41 0.85 16 4 C -0.15 -1.61 4.93 -27.88 -0.14 -1.75 16 5 C 0.52 7.50 7.55 -10.99 -0.08 7.41 16 6 O -0.55 -9.33 13.65 5.55 0.08 -9.26 16 7 N -0.70 -10.94 5.09 -51.40 -0.26 -11.21 16 8 C 0.13 2.24 2.75 -65.43 -0.18 2.06 16 9 H 0.08 1.38 7.31 -51.93 -0.38 1.00 16 10 C -0.14 -2.77 6.22 -24.24 -0.15 -2.92 16 11 C 0.16 3.42 4.69 -62.80 -0.29 3.13 16 12 H 0.15 3.82 5.57 -51.93 -0.29 3.53 16 13 C -0.14 -2.66 6.44 -24.23 -0.16 -2.82 16 14 C -0.13 -2.22 6.43 -24.28 -0.16 -2.38 16 15 C 0.12 2.30 5.08 -62.59 -0.32 1.98 16 16 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 17 N -0.59 -13.44 2.99 -145.52 -0.44 -13.88 16 18 C -0.22 -5.47 10.59 -15.06 -0.16 -5.63 16 19 H 0.08 1.90 7.83 -52.48 -0.41 1.49 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -25.15 10.48 55.49 0.58 -24.57 16 22 Si 0.91 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.45 4.82 2.69 37.16 0.10 4.92 16 27 F -0.19 -2.03 16.71 2.25 0.04 -1.99 16 28 F -0.18 -2.02 16.80 2.25 0.04 -1.99 16 29 F -0.18 -2.06 16.37 2.25 0.04 -2.03 16 30 H 0.10 1.31 5.95 -51.93 -0.31 1.00 16 31 H 0.06 0.67 7.80 -51.92 -0.41 0.26 16 32 H 0.06 0.64 7.80 -51.93 -0.41 0.23 16 33 H 0.11 1.11 7.94 -51.93 -0.41 0.70 16 34 H 0.10 0.97 7.66 -51.93 -0.40 0.57 16 35 H 0.40 6.11 8.64 -40.82 -0.35 5.75 16 36 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 37 H 0.05 0.98 7.82 -51.93 -0.41 0.57 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.79 7.83 -51.93 -0.41 0.38 16 42 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -27.99 345.19 -7.05 -35.04 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.81 Total: 7.89 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.49 Total: 0.89 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.12 Total: -49.65 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.11 Total: -6.01 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.99 -7.05 -35.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110976894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.516 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds