Wall clock time and date at job start Tue Mar 31 2020 13:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46453 * 2 1 4 4 C 1.52999 * 109.47294 * 239.99659 * 2 1 3 5 5 C 1.50698 * 109.47004 * 64.99627 * 4 2 1 6 6 O 1.21283 * 120.00472 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99538 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99665 * 179.72653 * 7 5 4 9 9 H 1.08997 * 110.56159 * 34.57939 * 8 7 5 10 10 C 1.54856 * 110.62840 * 271.67421 * 8 7 5 11 11 C 1.55835 * 103.45071 * 241.51146 * 10 8 7 12 12 H 1.09001 * 115.56506 * 159.56149 * 11 10 8 13 13 C 1.55850 * 105.06473 * 288.17751 * 11 10 8 14 14 C 1.54853 * 103.44817 * 71.82111 * 13 11 10 15 15 C 1.55771 * 103.59270 * 359.94272 * 14 13 11 16 16 H 1.08997 * 115.64832 * 159.69118 * 15 14 13 17 17 N 1.50247 * 101.04961 * 32.93638 * 11 10 8 18 18 C 1.36930 * 130.83583 * 126.01151 * 17 11 10 19 19 H 1.08006 * 119.99999 * 180.02562 * 18 17 11 20 20 C 1.38811 * 120.00514 * 0.03226 * 18 17 11 21 21 N 1.31617 * 119.99824 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00401 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46998 * 89.99414 * 22 20 18 24 24 H 1.48494 * 109.47174 * 209.99572 * 22 20 18 25 25 H 1.48497 * 109.46663 * 329.99697 * 22 20 18 26 26 C 1.52996 * 109.46980 * 119.99152 * 2 1 3 27 27 F 1.39901 * 109.47234 * 180.02562 * 26 2 1 28 28 F 1.39898 * 109.47655 * 300.00671 * 26 2 1 29 29 F 1.39909 * 109.46988 * 60.00308 * 26 2 1 30 30 H 1.09002 * 109.47039 * 60.00967 * 1 2 3 31 31 H 1.09008 * 109.46770 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47528 * 300.00016 * 1 2 3 33 33 H 1.09003 * 109.46690 * 304.99977 * 4 2 1 34 34 H 1.08993 * 109.46773 * 185.00313 * 4 2 1 35 35 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 36 36 H 1.09006 * 110.62680 * 0.02562 * 10 8 7 37 37 H 1.09000 * 110.62567 * 122.85982 * 10 8 7 38 38 H 1.09003 * 110.62395 * 190.31114 * 13 11 10 39 39 H 1.09004 * 110.62273 * 313.33351 * 13 11 10 40 40 H 1.09002 * 110.62698 * 118.48566 * 14 13 11 41 41 H 1.08998 * 110.62915 * 241.35432 * 14 13 11 42 42 H 0.97003 * 120.00241 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 8 1.0117 1.0872 -2.3634 7 7 1.9854 -0.3917 -3.7000 8 6 1.5926 0.3616 -4.8935 9 1 1.6058 1.4327 -4.6917 10 6 0.1930 -0.0840 -5.3838 11 6 0.4696 -0.6400 -6.8131 12 1 -0.2890 -1.3143 -7.2104 13 6 0.7759 0.6157 -7.6839 14 6 2.1755 1.0613 -7.1937 15 6 2.5271 0.0174 -6.0923 16 1 3.5861 -0.0758 -5.8514 17 7 1.8479 -1.2119 -6.6378 18 6 2.3367 -2.4649 -6.8946 19 1 3.3749 -2.6900 -6.6996 20 6 1.4980 -3.4459 -7.4057 21 7 0.2328 -3.1718 -7.6429 22 14 2.1651 -5.1551 -7.7567 23 1 2.0120 -6.0041 -6.5480 24 1 1.4108 -5.7588 -8.8844 25 1 3.6027 -5.0610 -8.1167 26 6 2.0400 -0.7210 1.2493 27 9 3.4390 -0.7206 1.2497 28 9 1.5736 -0.0616 2.3916 29 9 1.5737 -2.0401 1.2494 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2054 35 1 2.4894 -1.2156 -3.7906 36 1 -0.2091 -0.8652 -4.7387 37 1 -0.4880 0.7661 -5.4250 38 1 0.8053 0.3518 -8.7411 39 1 0.0386 1.3978 -7.5026 40 1 2.8991 1.0184 -8.0078 41 1 2.1330 2.0654 -6.7719 42 1 -0.3532 -3.8571 -8.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110976894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:43 Heat of formation + Delta-G solvation = -174.816444 kcal Electronic energy + Delta-G solvation = -28214.087401 eV Core-core repulsion = 23779.159847 eV Total energy + Delta-G solvation = -4434.927554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.11817 -48.60066 -48.57938 -41.32998 -40.03948 -36.13565 -35.19109 -34.38634 -30.93299 -30.67246 -29.90297 -28.29599 -27.22994 -26.05716 -23.38419 -22.21162 -21.51297 -21.08164 -20.23777 -19.57149 -19.33348 -18.82417 -18.58405 -17.41158 -17.21762 -16.76607 -16.46573 -15.79430 -15.72559 -15.48383 -15.36419 -15.03304 -15.01284 -14.77313 -14.72848 -14.57122 -14.38947 -14.00312 -13.68762 -13.64950 -13.33309 -12.88588 -12.84289 -12.73507 -12.68337 -12.37476 -12.31882 -12.26675 -12.07070 -11.94167 -11.87516 -11.66923 -11.17780 -10.91319 -10.89757 -10.59688 -9.88754 -8.84625 -7.73758 -5.12991 1.50747 1.51689 1.59204 1.64687 1.71537 2.29030 2.52118 2.82875 3.03741 3.06584 3.40066 3.46759 3.63590 3.84711 3.94335 4.05830 4.11992 4.24642 4.30256 4.47735 4.52590 4.53589 4.55079 4.66438 4.72474 4.81306 4.86060 4.92706 4.94146 5.11303 5.19502 5.21347 5.28219 5.40826 5.54983 5.63950 5.75591 5.92819 6.28320 6.67391 7.08376 7.30945 7.75060 8.60843 9.33680 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.003590 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.285644 B = 7797.227290 C = 8876.988629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 H 0.125 0.875 4 C -0.140 4.140 5 C 0.518 3.482 6 O -0.573 6.573 7 N -0.705 5.705 8 C 0.141 3.859 9 H 0.089 0.911 10 C -0.132 4.132 11 C 0.141 3.859 12 H 0.112 0.888 13 C -0.133 4.133 14 C -0.120 4.120 15 C 0.126 3.874 16 H 0.105 0.895 17 N -0.611 5.611 18 C -0.212 4.212 19 H 0.086 0.914 20 C -0.066 4.066 21 N -0.948 5.948 22 Si 0.971 3.029 23 H -0.290 1.290 24 H -0.303 1.303 25 H -0.272 1.272 26 C 0.459 3.541 27 F -0.185 7.185 28 F -0.185 7.185 29 F -0.186 7.186 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.407 0.593 36 H 0.035 0.965 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 7.404 14.265 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.130 4.130 3 H 0.143 0.857 4 C -0.180 4.180 5 C 0.305 3.695 6 O -0.454 6.454 7 N -0.354 5.354 8 C 0.035 3.965 9 H 0.106 0.894 10 C -0.172 4.172 11 C 0.034 3.966 12 H 0.129 0.871 13 C -0.172 4.172 14 C -0.159 4.159 15 C 0.019 3.981 16 H 0.123 0.877 17 N -0.332 5.332 18 C -0.341 4.341 19 H 0.104 0.896 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.801 3.199 23 H -0.218 1.218 24 H -0.230 1.230 25 H -0.197 1.197 26 C 0.405 3.595 27 F -0.166 7.166 28 F -0.166 7.166 29 F -0.167 7.167 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.242 0.758 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.871 7.805 14.259 16.710 hybrid contribution 0.248 -1.680 -0.335 1.731 sum 4.118 6.125 13.924 15.759 Atomic orbital electron populations 1.21951 0.91259 1.03472 1.04642 1.22094 1.00044 1.01682 0.89184 0.85664 1.21715 1.05201 1.00648 0.90399 1.20585 0.78702 0.85271 0.84940 1.90639 1.41582 1.26086 1.87044 1.45990 1.56396 1.27719 1.05285 1.22401 0.94756 0.95027 0.84345 0.89358 1.23301 0.96422 0.98806 0.98695 1.23519 0.89138 0.91784 0.92158 0.87062 1.22974 0.97254 0.98190 0.98826 1.22819 0.96632 0.98199 0.98285 1.23434 0.95755 0.86965 0.91911 0.87710 1.46809 1.06649 1.06504 1.73277 1.19349 0.94657 0.86027 1.34081 0.89630 1.25388 0.96115 1.01338 1.03051 1.69744 1.05069 1.32965 1.52028 0.85168 0.77454 0.80533 0.76696 1.21753 1.23034 1.19669 1.20605 0.75237 0.77520 0.86165 1.93179 1.30228 1.96422 1.96811 1.93168 1.88513 1.80798 1.54151 1.93178 1.88470 1.38231 1.96828 0.90162 0.91572 0.90567 0.86817 0.85680 0.75789 0.94656 0.91684 0.94561 0.91136 0.92387 0.89943 0.94633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 8.69 71.98 0.63 -2.55 16 2 C -0.11 -2.10 2.01 -10.79 -0.02 -2.12 16 3 H 0.13 2.33 7.95 -2.39 -0.02 2.31 16 4 C -0.14 -2.75 4.93 29.85 0.15 -2.61 16 5 C 0.52 14.04 7.55 87.66 0.66 14.70 16 6 O -0.57 -18.50 13.65 -3.04 -0.04 -18.54 16 7 N -0.71 -20.67 5.09 -434.91 -2.21 -22.88 16 8 C 0.14 4.65 2.75 46.61 0.13 4.78 16 9 H 0.09 2.81 7.31 -2.39 -0.02 2.79 16 10 C -0.13 -5.06 6.22 32.21 0.20 -4.86 16 11 C 0.14 6.22 4.69 46.22 0.22 6.44 16 12 H 0.11 5.90 5.57 -2.39 -0.01 5.89 16 13 C -0.13 -4.96 6.44 32.21 0.21 -4.75 16 14 C -0.12 -3.85 6.43 32.18 0.21 -3.65 16 15 C 0.13 4.38 5.08 46.11 0.23 4.62 16 16 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 17 N -0.61 -27.49 2.99 -614.31 -1.84 -29.33 16 18 C -0.21 -10.67 10.59 84.03 0.89 -9.78 16 19 H 0.09 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.07 -3.51 5.50 84.86 0.47 -3.05 16 21 N -0.95 -53.67 10.48 21.65 0.23 -53.44 16 22 Si 0.97 43.51 29.55 68.60 2.03 45.54 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C 0.46 8.76 2.69 71.98 0.19 8.95 16 27 F -0.18 -3.60 16.71 44.97 0.75 -2.85 16 28 F -0.18 -3.71 16.80 44.97 0.76 -2.95 16 29 F -0.19 -3.83 16.37 44.97 0.74 -3.09 16 30 H 0.08 2.01 5.95 -2.39 -0.01 2.00 16 31 H 0.07 1.30 7.80 -2.38 -0.02 1.28 16 32 H 0.08 1.36 7.80 -2.39 -0.02 1.34 16 33 H 0.11 2.13 7.94 -2.39 -0.02 2.11 16 34 H 0.13 1.95 7.66 -2.39 -0.02 1.93 16 35 H 0.41 11.55 8.64 -92.71 -0.80 10.75 16 36 H 0.03 1.49 7.98 -2.38 -0.02 1.47 16 37 H 0.06 2.30 7.82 -2.39 -0.02 2.29 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 2.28 7.82 -2.38 -0.02 2.27 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.08 2.18 7.83 -2.39 -0.02 2.16 16 42 H 0.24 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -60.47 345.19 4.82 -55.65 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.25 Total: 25.78 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.16 Total: 6.12 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -3.82 Total: -105.65 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.04 Total: -18.54 kcal Atomic # 9 Polarization: -11.14 SS G_CDS: 2.24 Total: -8.89 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -60.47 4.82 -55.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110976894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.167 kcal (2) G-P(sol) polarization free energy of solvation -60.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds