Wall clock time and date at job start Tue Mar 31 2020 12:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.58479 * 2 1 4 4 C 1.53193 * 109.58952 * 120.27856 * 2 1 3 5 5 C 1.53076 * 109.29718 * 174.27915 * 4 2 1 6 6 C 1.53038 * 109.65922 * 298.85533 * 5 4 2 7 7 H 1.08999 * 109.49829 * 301.34047 * 6 5 4 8 8 N 1.46500 * 109.51832 * 181.26586 * 6 5 4 9 9 C 1.34786 * 119.99896 * 155.14621 * 8 6 5 10 10 O 1.21277 * 119.99574 * 4.55313 * 9 8 6 11 11 C 1.50699 * 119.99944 * 184.55753 * 9 8 6 12 12 C 1.53001 * 115.54890 * 268.81647 * 11 9 8 13 13 F 1.39894 * 109.47203 * 54.87223 * 12 11 9 14 14 F 1.39905 * 109.46654 * 174.87096 * 12 11 9 15 15 F 1.39898 * 109.46904 * 294.86874 * 12 11 9 16 16 C 1.52997 * 117.49568 * 123.11065 * 11 9 8 17 17 C 1.53001 * 60.00189 * 252.50961 * 16 11 9 18 18 C 1.53195 * 109.31510 * 61.29810 * 6 5 4 19 19 N 1.46920 * 108.77140 * 305.36460 * 18 6 5 20 20 C 1.36936 * 120.62726 * 233.62912 * 19 18 6 21 21 H 1.08002 * 120.00494 * 149.28752 * 20 19 18 22 22 C 1.38817 * 120.00235 * 329.28915 * 20 19 18 23 23 N 1.31619 * 119.99814 * 345.37864 * 22 20 19 24 24 Si 1.86800 * 120.00207 * 165.37913 * 22 20 19 25 25 H 1.48503 * 109.46904 * 60.00133 * 24 22 20 26 26 H 1.48501 * 109.47086 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47208 * 299.99904 * 24 22 20 28 28 H 1.09004 * 109.46625 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47120 * 60.00352 * 1 2 3 30 30 H 1.09001 * 109.47249 * 299.99899 * 1 2 3 31 31 H 1.08999 * 109.50288 * 294.38044 * 4 2 1 32 32 H 1.09000 * 109.49353 * 54.47608 * 4 2 1 33 33 H 1.08996 * 109.45205 * 178.75932 * 5 4 2 34 34 H 1.09002 * 109.32805 * 58.87406 * 5 4 2 35 35 H 0.96999 * 120.00436 * 335.13827 * 8 6 5 36 36 H 1.09005 * 117.50098 * 0.02562 * 16 11 9 37 37 H 1.09005 * 117.49731 * 145.01818 * 16 11 9 38 38 H 1.09001 * 117.49754 * 252.51203 * 17 16 11 39 39 H 1.09001 * 117.49934 * 107.48675 * 17 16 11 40 40 H 1.08999 * 109.58295 * 185.57762 * 18 6 5 41 41 H 1.08998 * 109.58234 * 65.15414 * 18 6 5 42 42 H 0.96998 * 119.99996 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7277 1.2464 5 6 3.5675 -0.8493 1.1691 6 6 3.9570 -1.6655 -0.0656 7 1 3.4985 -2.6527 -0.0086 8 7 5.4142 -1.8056 -0.1200 9 6 5.9672 -2.8462 -0.7743 10 8 5.2630 -3.6203 -1.3872 11 6 7.4603 -3.0477 -0.7440 12 6 8.2395 -2.3796 -1.8787 13 9 7.9363 -1.0143 -1.9118 14 9 9.6117 -2.5476 -1.6641 15 9 7.8829 -2.9662 -3.0977 16 6 7.9818 -4.3880 -0.2219 17 6 8.1352 -3.1243 0.6270 18 6 3.4651 -0.9451 -1.3249 19 7 2.0226 -0.6980 -1.1953 20 6 1.1537 -1.1107 -2.1699 21 1 0.1440 -1.3918 -1.9095 22 6 1.5707 -1.1679 -3.4927 23 7 2.6822 -0.5655 -3.8590 24 14 0.5545 -2.0999 -4.7529 25 1 -0.8042 -1.5056 -4.8305 26 1 1.2104 -2.0096 -6.0822 27 1 0.4493 -3.5248 -4.3481 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 1.7660 -0.1641 2.1371 32 1 1.6031 -1.7236 1.2935 33 1 3.9378 -1.3472 2.0652 34 1 4.0059 0.1462 1.0995 35 1 5.9812 -1.1494 0.3146 36 1 7.2448 -5.1241 0.0994 37 1 8.8802 -4.7941 -0.6868 38 1 9.1345 -2.6991 0.7204 39 1 7.4992 -3.0289 1.5070 40 1 3.6519 -1.5688 -2.1991 41 1 3.9904 0.0040 -1.4316 42 1 2.9738 -0.6057 -4.7832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132327933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:46 Heat of formation + Delta-G solvation = -165.051358 kcal Electronic energy + Delta-G solvation = -28962.015840 eV Core-core repulsion = 24527.511732 eV Total energy + Delta-G solvation = -4434.504108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.25075 -48.77521 -48.74507 -41.33503 -39.47093 -37.74091 -36.08318 -34.66019 -32.23007 -31.74219 -28.53062 -27.76059 -26.84519 -24.63810 -23.87988 -23.63928 -22.12298 -21.48371 -20.91269 -19.73130 -19.46287 -19.18499 -18.34214 -17.49408 -17.36118 -16.76852 -16.02922 -15.83246 -15.65553 -15.58831 -15.44538 -15.20473 -15.16971 -15.04055 -14.93052 -14.90770 -14.64452 -14.46562 -14.15022 -13.59030 -13.44656 -13.08339 -12.78209 -12.72568 -12.60124 -12.57947 -12.32039 -12.16003 -12.08488 -11.97489 -11.91015 -11.64733 -11.42089 -11.16115 -10.97362 -10.55441 -10.17398 -8.61888 -7.86564 -5.34384 1.05583 1.38877 1.44446 1.48573 1.73348 1.88007 2.14204 2.48726 2.61414 2.92785 3.18463 3.29467 3.36738 3.61185 3.67823 3.79422 3.95885 4.09278 4.25623 4.37183 4.41878 4.55355 4.59478 4.71167 4.78470 4.80890 4.89522 4.99659 5.01083 5.07786 5.18434 5.28186 5.31543 5.40744 5.55441 5.60334 5.69402 5.77882 6.38274 6.47434 7.10995 7.16825 7.88978 8.38552 9.18151 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.004789 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.211156 B = 5845.738301 C = 7055.531570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.151 3.849 3 H 0.020 0.980 4 C -0.117 4.117 5 C -0.106 4.106 6 C 0.131 3.869 7 H 0.057 0.943 8 N -0.694 5.694 9 C 0.547 3.453 10 O -0.565 6.565 11 C -0.264 4.264 12 C 0.499 3.501 13 F -0.182 7.182 14 F -0.163 7.163 15 F -0.192 7.192 16 C -0.113 4.113 17 C -0.098 4.098 18 C 0.180 3.820 19 N -0.602 5.602 20 C -0.251 4.251 21 H 0.075 0.925 22 C -0.054 4.054 23 N -0.934 5.934 24 Si 0.956 3.044 25 H -0.266 1.266 26 H -0.299 1.299 27 H -0.284 1.284 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.414 0.586 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.037 0.963 41 H -0.006 1.006 42 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.889 -2.818 16.029 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.046 3.954 3 H 0.037 0.963 4 C -0.156 4.156 5 C -0.144 4.144 6 C 0.025 3.975 7 H 0.075 0.925 8 N -0.344 5.344 9 C 0.332 3.668 10 O -0.443 6.443 11 C -0.269 4.269 12 C 0.444 3.556 13 F -0.164 7.164 14 F -0.144 7.144 15 F -0.173 7.173 16 C -0.150 4.150 17 C -0.134 4.134 18 C 0.053 3.947 19 N -0.326 5.326 20 C -0.382 4.382 21 H 0.093 0.907 22 C -0.249 4.249 23 N -0.580 5.580 24 Si 0.785 3.215 25 H -0.191 1.191 26 H -0.226 1.226 27 H -0.211 1.211 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.251 0.749 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.419 -3.315 15.430 20.082 hybrid contribution -0.149 0.112 -1.938 1.947 sum 12.270 -3.203 13.492 18.516 Atomic orbital electron populations 1.21728 0.94752 1.01158 1.00988 1.20836 0.94328 0.93379 0.86831 0.96256 1.21954 0.94556 1.00965 0.98170 1.21658 0.97107 0.99951 0.95716 1.21605 0.78565 0.99465 0.97846 0.92514 1.45850 1.07954 1.26151 1.54483 1.19287 0.87739 0.81279 0.78533 1.90768 1.63847 1.47108 1.42577 1.22406 0.92671 1.11692 1.00105 1.19135 0.77884 0.76435 0.82137 1.93213 1.93017 1.33499 1.96649 1.93183 1.31418 1.95200 1.94600 1.93212 1.91849 1.84161 1.48083 1.23345 1.03176 0.89019 0.99437 1.23592 1.03085 0.97985 0.88767 1.20730 0.83948 0.95081 0.94983 1.44289 1.02368 1.65742 1.20232 1.19422 0.95911 1.36439 0.86381 0.90738 1.25861 0.99065 1.00750 0.99219 1.70157 1.25859 1.45742 1.16243 0.85504 0.78832 0.78942 0.78254 1.19091 1.22566 1.21093 0.93475 0.94554 0.90202 0.88362 0.92723 0.88836 0.90977 0.74850 0.86524 0.84930 0.83906 0.84399 0.94408 0.98772 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 7.96 71.98 0.57 -4.03 16 2 C 0.15 5.97 3.49 44.97 0.16 6.13 16 3 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 4 C -0.12 -3.47 5.38 30.68 0.17 -3.31 16 5 C -0.11 -2.94 5.35 30.63 0.16 -2.78 16 6 C 0.13 4.96 2.57 45.07 0.12 5.08 16 7 H 0.06 2.47 7.65 -2.39 -0.02 2.45 16 8 N -0.69 -21.69 5.07 -442.16 -2.24 -23.93 16 9 C 0.55 19.07 6.69 87.66 0.59 19.66 16 10 O -0.57 -26.39 16.81 -3.02 -0.05 -26.44 16 11 C -0.26 -6.48 1.98 -52.93 -0.10 -6.58 16 12 C 0.50 13.92 3.06 71.98 0.22 14.14 16 13 F -0.18 -5.62 17.12 44.97 0.77 -4.85 16 14 F -0.16 -3.55 15.90 44.97 0.72 -2.83 16 15 F -0.19 -6.76 17.29 44.97 0.78 -5.98 16 16 C -0.11 -1.91 9.69 30.59 0.30 -1.61 16 17 C -0.10 -1.22 9.65 30.60 0.30 -0.92 16 18 C 0.18 9.13 4.85 86.36 0.42 9.55 16 19 N -0.60 -30.69 2.98 -675.24 -2.01 -32.71 16 20 C -0.25 -14.22 8.55 84.03 0.72 -13.51 16 21 H 0.08 4.04 6.26 -2.91 -0.02 4.03 16 22 C -0.05 -3.21 4.95 84.86 0.42 -2.79 16 23 N -0.93 -59.60 11.24 21.65 0.24 -59.36 16 24 Si 0.96 48.46 29.58 68.60 2.03 50.49 16 25 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 27 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 28 H 0.05 1.72 7.42 -2.38 -0.02 1.70 16 29 H 0.04 1.45 7.65 -2.38 -0.02 1.43 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.41 9.66 8.61 -92.71 -0.80 8.86 16 36 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.13 1.78 7.93 -2.38 -0.02 1.76 16 38 H 0.14 1.12 7.63 -2.39 -0.02 1.10 16 39 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.04 2.33 6.19 -2.39 -0.01 2.32 16 41 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -79.61 352.43 4.51 -75.10 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.25 Total: 11.49 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 4.03 Total: 19.02 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -4.01 Total: -116.00 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.44 kcal Atomic # 9 Polarization: -15.93 SS G_CDS: 2.26 Total: -13.66 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -79.61 4.51 -75.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132327933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.949 kcal (2) G-P(sol) polarization free energy of solvation -79.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds