Wall clock time and date at job start Tue Mar 31 2020 13:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47228 * 2 1 4 4 C 1.52996 * 109.47070 * 119.99807 * 2 1 3 5 5 C 1.52994 * 109.47341 * 294.24601 * 4 2 1 6 6 F 1.39894 * 109.47255 * 65.67530 * 5 4 2 7 7 F 1.39909 * 109.47197 * 185.67416 * 5 4 2 8 8 F 1.39901 * 109.47326 * 305.67291 * 5 4 2 9 9 C 1.50699 * 109.47120 * 240.00143 * 2 1 3 10 10 O 1.21284 * 120.00057 * 255.75121 * 9 2 1 11 11 N 1.34773 * 120.00124 * 75.76072 * 9 2 1 12 12 C 1.47894 * 134.34244 * 5.77265 * 11 9 2 13 13 C 1.52369 * 85.58981 * 156.51836 * 12 11 9 14 14 C 1.47898 * 134.34568 * 185.77572 * 11 9 2 15 15 C 1.53659 * 116.39209 * 141.36182 * 13 12 11 16 16 C 1.54601 * 102.73216 * 95.48177 * 15 13 12 17 17 N 1.47135 * 107.36720 * 20.75657 * 16 15 13 18 18 C 1.36929 * 125.58896 * 180.93074 * 17 16 15 19 19 H 1.08000 * 120.00626 * 170.40482 * 18 17 16 20 20 C 1.38816 * 120.00030 * 350.40006 * 18 17 16 21 21 N 1.31621 * 120.00226 * 165.96305 * 20 18 17 22 22 Si 1.86798 * 119.99843 * 345.69209 * 20 18 17 23 23 H 1.48504 * 109.47148 * 185.46899 * 22 20 18 24 24 H 1.48502 * 109.47199 * 305.46723 * 22 20 18 25 25 H 1.48498 * 109.47161 * 65.46958 * 22 20 18 26 26 C 1.47727 * 108.82408 * 1.19113 * 17 16 15 27 27 H 1.08995 * 109.47242 * 308.98916 * 1 2 3 28 28 H 1.09002 * 109.47056 * 68.99263 * 1 2 3 29 29 H 1.09000 * 109.46784 * 188.98965 * 1 2 3 30 30 H 1.08999 * 109.47386 * 54.24762 * 4 2 1 31 31 H 1.09004 * 109.47211 * 174.24253 * 4 2 1 32 32 H 1.08991 * 113.85421 * 42.34831 * 12 11 9 33 33 H 1.09006 * 113.96554 * 270.69663 * 12 11 9 34 34 H 1.08999 * 113.85322 * 89.31485 * 14 11 9 35 35 H 1.08995 * 113.84798 * 317.64904 * 14 11 9 36 36 H 1.09002 * 110.75245 * 337.16898 * 15 13 12 37 37 H 1.09000 * 110.75981 * 213.79684 * 15 13 12 38 38 H 1.09007 * 109.86844 * 261.31171 * 16 15 13 39 39 H 1.08998 * 109.98184 * 140.26636 * 16 15 13 40 40 H 0.97008 * 119.99564 * 354.61623 * 21 20 18 41 41 H 1.08997 * 110.40128 * 96.07184 * 26 17 16 42 42 H 1.08999 * 110.40041 * 218.48648 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6515 0.0787 2.4942 6 9 0.2591 0.0845 2.6291 7 9 2.2271 -0.5102 3.6253 8 9 2.1132 1.3932 2.3669 9 6 2.0323 -0.7104 -1.2305 10 8 2.4782 -1.8348 -1.1420 11 7 1.9863 -0.0961 -2.4292 12 6 1.6224 1.2645 -2.8802 13 6 2.4947 0.9683 -4.0938 14 6 2.2795 -0.5145 -3.8171 15 6 1.9851 1.4920 -5.4455 16 6 2.7295 2.8391 -5.5915 17 7 3.9049 2.7894 -4.7079 18 6 4.8152 3.7976 -4.5352 19 1 5.5559 3.7283 -3.7522 20 6 4.7861 4.9090 -5.3664 21 7 5.4615 5.9912 -5.0423 22 14 3.7945 4.8659 -6.9489 23 1 4.0317 6.1152 -7.7159 24 1 4.2135 3.6975 -7.7641 25 1 2.3499 4.7509 -6.6248 26 6 3.9456 1.4711 -4.0425 27 1 -0.3633 0.6465 0.7987 28 1 -0.3633 0.3684 -0.9594 29 1 -0.3633 -1.0151 0.1606 30 1 1.5950 -1.7148 1.3023 31 1 3.1251 -0.8114 1.1992 32 1 2.0098 2.0587 -2.2421 33 1 0.5650 1.3848 -3.1162 34 1 1.4228 -0.9406 -4.3394 35 1 3.1827 -1.1167 -3.9144 36 1 0.9066 1.6475 -5.4177 37 1 2.2576 0.8106 -6.2515 38 1 2.0754 3.6581 -5.2921 39 1 3.0482 2.9785 -6.6245 40 1 5.9157 6.0413 -4.1866 41 1 4.6051 0.7926 -4.5835 42 1 4.2738 1.5774 -3.0085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148193821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:49 Heat of formation + Delta-G solvation = -144.828380 kcal Electronic energy + Delta-G solvation = -28071.379427 eV Core-core repulsion = 23637.752253 eV Total energy + Delta-G solvation = -4433.627174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.18642 -48.67470 -48.64488 -41.95610 -40.02367 -37.53723 -35.99094 -34.43390 -31.84787 -30.58757 -29.78500 -27.83634 -27.37146 -25.78568 -24.87453 -23.10684 -22.66970 -20.52715 -19.91331 -19.61156 -19.36757 -19.30337 -18.65490 -17.54752 -17.20862 -16.96761 -16.64426 -16.30633 -15.94400 -15.56529 -15.50270 -15.41657 -15.11645 -14.89748 -14.85470 -14.79393 -14.59079 -14.28232 -14.18153 -13.93429 -13.52133 -13.35335 -13.12995 -13.04090 -12.99529 -12.76489 -12.47601 -12.43840 -12.26145 -12.02313 -11.89530 -11.44194 -11.34093 -11.07726 -10.81098 -10.57130 -9.76500 -9.06670 -8.63911 -5.45823 1.43121 1.48646 1.52933 1.54717 1.76586 1.86169 2.59157 2.73030 2.89059 3.02352 3.08247 3.22900 3.37764 3.46682 3.53751 3.65547 3.78742 3.93312 4.02454 4.09017 4.37701 4.39230 4.44220 4.54073 4.59022 4.62945 4.64177 4.74399 4.76359 4.77980 4.90418 4.91662 4.99171 5.02436 5.17516 5.20007 5.30002 5.54939 6.11343 6.60720 6.84776 6.99519 7.45230 8.10425 8.89116 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.003298 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.082706 B = 8489.091814 C = 9283.939123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 H 0.107 0.893 4 C -0.145 4.145 5 C 0.459 3.541 6 F -0.178 7.178 7 F -0.188 7.188 8 F -0.189 7.189 9 C 0.543 3.457 10 O -0.581 6.581 11 N -0.641 5.641 12 C 0.126 3.874 13 C -0.102 4.102 14 C 0.131 3.869 15 C -0.098 4.098 16 C 0.093 3.907 17 N -0.633 5.633 18 C -0.311 4.311 19 H 0.038 0.962 20 C -0.081 4.081 21 N -0.967 5.967 22 Si 1.113 2.887 23 H -0.319 1.319 24 H -0.286 1.286 25 H -0.239 1.239 26 C 0.158 3.842 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.024 0.976 40 H 0.245 0.755 41 H 0.026 0.974 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.597 -15.647 8.867 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 H 0.125 0.875 4 C -0.183 4.183 5 C 0.405 3.595 6 F -0.159 7.159 7 F -0.169 7.169 8 F -0.171 7.171 9 C 0.333 3.667 10 O -0.462 6.462 11 N -0.375 5.375 12 C 0.004 3.996 13 C -0.104 4.104 14 C 0.009 3.991 15 C -0.136 4.136 16 C -0.031 4.031 17 N -0.360 5.360 18 C -0.439 4.439 19 H 0.056 0.944 20 C -0.273 4.273 21 N -0.612 5.612 22 Si 0.941 3.059 23 H -0.248 1.248 24 H -0.214 1.214 25 H -0.164 1.164 26 C 0.033 3.967 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -16.677 -15.409 7.836 24.020 hybrid contribution 1.608 -0.227 1.984 2.564 sum -15.069 -15.637 9.820 23.833 Atomic orbital electron populations 1.22011 0.89785 1.04138 1.04584 1.21210 1.00084 1.00955 0.90688 0.87543 1.22687 1.05939 1.00758 0.88918 1.20522 0.74693 0.78357 0.85924 1.93156 1.30049 1.96418 1.96296 1.93189 1.84660 1.83865 1.55192 1.93193 1.88743 1.39182 1.95989 1.20245 0.77303 0.85225 0.83908 1.90689 1.48405 1.20891 1.86170 1.50209 1.66085 1.15401 1.05796 1.23232 1.00983 0.83162 0.92232 1.22359 0.95448 0.96024 0.96538 1.23093 1.02413 0.94673 0.78889 1.22380 1.01368 0.94253 0.95570 1.22309 0.88566 0.99214 0.92979 1.44974 1.26911 1.12605 1.51551 1.20024 1.11165 0.98230 1.14521 0.94361 1.27225 1.02041 0.91596 1.06468 1.71006 1.37565 1.28543 1.24081 0.83386 0.77068 0.73153 0.72310 1.24849 1.21366 1.16371 1.21203 0.94344 0.86025 0.95174 0.89673 0.90480 0.91063 0.85443 0.87127 0.90827 0.85300 0.85648 0.90761 0.86465 0.88737 0.93900 0.95866 0.94596 0.95571 0.95689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.33 71.98 0.60 -1.46 16 2 C -0.11 -1.99 2.37 -11.54 -0.03 -2.01 16 3 H 0.11 1.99 7.49 -2.38 -0.02 1.98 16 4 C -0.14 -2.52 4.15 30.59 0.13 -2.40 16 5 C 0.46 8.29 3.12 71.98 0.22 8.51 16 6 F -0.18 -3.05 14.39 44.97 0.65 -2.40 16 7 F -0.19 -3.69 17.32 44.97 0.78 -2.91 16 8 F -0.19 -3.99 16.47 44.97 0.74 -3.25 16 9 C 0.54 13.14 7.23 87.66 0.63 13.77 16 10 O -0.58 -17.91 16.84 -3.04 -0.05 -17.96 16 11 N -0.64 -14.16 3.62 -863.58 -3.12 -17.28 16 12 C 0.13 2.54 7.94 85.90 0.68 3.22 16 13 C -0.10 -2.47 0.99 -52.08 -0.05 -2.53 16 14 C 0.13 2.61 8.21 85.90 0.71 3.32 16 15 C -0.10 -2.21 6.36 31.36 0.20 -2.01 16 16 C 0.09 3.39 4.64 86.80 0.40 3.79 16 17 N -0.63 -28.84 3.35 -692.87 -2.32 -31.16 16 18 C -0.31 -17.82 10.57 84.04 0.89 -16.93 16 19 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 20 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 21 N -0.97 -62.38 13.70 21.65 0.30 -62.08 16 22 Si 1.11 51.91 24.51 68.60 1.68 53.60 16 23 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 24 H -0.29 -12.57 6.77 99.48 0.67 -11.90 16 25 H -0.24 -9.33 5.41 99.48 0.54 -8.79 16 26 C 0.16 5.77 6.65 86.36 0.57 6.35 16 27 H 0.08 1.12 6.11 -2.39 -0.01 1.11 16 28 H 0.08 0.94 8.12 -2.39 -0.02 0.92 16 29 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 30 H 0.13 2.01 8.07 -2.39 -0.02 1.99 16 31 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 33 H 0.13 1.66 8.04 -2.38 -0.02 1.65 16 34 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.67 8.12 -2.39 -0.02 1.65 16 36 H 0.12 1.75 7.99 -2.39 -0.02 1.73 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.61 6.62 -2.38 -0.02 1.59 16 39 H 0.02 0.92 3.85 -2.39 -0.01 0.91 16 40 H 0.25 15.97 8.73 -92.70 -0.81 15.16 16 41 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.02 0.99 8.08 -2.39 -0.02 0.97 16 Total: -1.00 -75.44 343.60 4.87 -70.57 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 0.80 Total: 5.59 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 5.42 Total: 7.29 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -5.15 Total: -110.52 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.05 Total: -17.96 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 2.17 Total: -8.56 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 1.68 Total: 53.60 kcal Total: -75.44 4.87 -70.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148193821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.262 kcal (2) G-P(sol) polarization free energy of solvation -75.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds