Wall clock time and date at job start Tue Mar 31 2020 13:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 116.99576 * 2 1 4 4 C 1.38750 * 120.06088 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94880 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.04834 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.93784 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47101 * 256.81623 * 7 6 5 9 9 H 1.08999 * 109.47376 * 305.00125 * 8 7 6 10 10 C 1.53005 * 109.47319 * 185.00015 * 8 7 6 11 11 N 1.46904 * 109.46967 * 65.00255 * 8 7 6 12 12 C 1.47477 * 111.00147 * 275.96794 * 11 8 7 13 13 C 1.53503 * 87.93544 * 221.29843 * 12 11 8 14 14 C 1.50700 * 114.17194 * 139.67221 * 13 12 11 15 15 H 1.08001 * 119.99590 * 266.15795 * 14 13 12 16 16 C 1.37879 * 120.00251 * 86.16001 * 14 13 12 17 17 N 1.31508 * 119.99490 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00069 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47363 * 59.99850 * 18 16 14 20 20 H 1.48497 * 109.47097 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47469 * 299.99880 * 18 16 14 22 22 C 1.47487 * 110.99790 * 179.97438 * 11 8 7 23 23 C 1.38239 * 120.11876 * 0.27522 * 6 5 4 24 24 N 1.47999 * 119.97576 * 179.70384 * 23 6 5 25 25 O 1.21793 * 120.00261 * 185.48919 * 24 23 6 26 26 O 1.21801 * 119.99948 * 5.49053 * 24 23 6 27 27 C 1.38166 * 120.05076 * 359.44899 * 23 6 5 28 28 H 1.09001 * 109.46989 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47101 * 299.99125 * 1 2 3 30 30 H 1.08996 * 109.47630 * 59.99915 * 1 2 3 31 31 H 1.08004 * 120.02554 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.97419 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47134 * 136.81897 * 7 6 5 34 34 H 1.09000 * 109.47697 * 16.81861 * 7 6 5 35 35 H 1.09001 * 109.47417 * 180.02562 * 10 8 7 36 36 H 1.08999 * 109.46987 * 300.00349 * 10 8 7 37 37 H 1.09000 * 109.46942 * 60.00180 * 10 8 7 38 38 H 1.08999 * 113.47354 * 336.06853 * 12 11 8 39 39 H 1.08996 * 113.47343 * 106.52914 * 12 11 8 40 40 H 1.08997 * 114.17034 * 272.37687 * 13 12 11 41 41 H 0.97008 * 119.99434 * 180.02562 * 17 16 14 42 42 H 1.08999 * 113.47487 * 253.46755 * 22 11 8 43 43 H 1.08997 * 113.47377 * 23.87372 * 22 11 8 44 44 H 1.08007 * 120.02754 * 180.27090 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6757 -0.0005 7 6 3.9859 5.0185 -0.0005 8 6 4.5100 5.3239 -1.4051 9 1 5.1524 4.5088 -1.7384 10 6 5.3117 6.6268 -1.3783 11 7 3.3777 5.4646 -2.3304 12 6 2.9341 4.1487 -2.8269 13 6 2.7767 4.7871 -4.2140 14 6 3.2366 3.9123 -5.3516 15 1 4.2435 4.0050 -5.7311 16 6 2.3720 2.9936 -5.9080 17 7 1.1461 2.8805 -5.4455 18 14 2.9423 1.9088 -7.3177 19 1 4.0997 1.0902 -6.8754 20 1 1.8331 1.0132 -7.7331 21 1 3.3478 2.7602 -8.4648 22 6 3.8458 5.7607 -3.6973 23 6 4.0559 2.5172 -0.0063 24 7 5.5338 2.5968 -0.0135 25 8 6.1979 1.5814 -0.1194 26 8 6.0859 3.6779 0.0866 27 6 3.4311 1.2849 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2127 2.3203 0.0005 32 1 1.3339 4.5114 0.0000 33 1 4.8188 5.0020 0.7023 34 1 3.2746 5.7888 0.2972 35 1 5.6847 6.8446 -2.3791 36 1 4.6693 7.4419 -1.0451 37 1 6.1519 6.5224 -0.6918 38 1 3.7106 3.3849 -2.7859 39 1 1.9914 3.8160 -2.3924 40 1 1.8027 5.2448 -4.3867 41 1 0.5380 2.2338 -5.8367 42 1 3.6754 6.7938 -4.0004 43 1 4.8661 5.4282 -3.8884 44 1 4.0207 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170326671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:45 Heat of formation + Delta-G solvation = 26.448573 kcal Electronic energy + Delta-G solvation = -28562.736801 eV Core-core repulsion = 24678.393493 eV Total energy + Delta-G solvation = -3884.343308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14753 -40.38455 -39.34287 -37.70988 -36.46606 -34.17171 -32.36728 -31.92501 -30.88701 -28.19876 -27.33193 -26.45445 -25.70156 -24.52749 -23.86922 -22.66667 -21.85102 -20.07748 -19.21919 -18.69582 -18.50120 -17.30530 -17.06996 -16.68061 -16.38312 -15.94521 -15.72969 -15.27166 -14.60567 -14.28920 -14.11835 -13.92655 -13.62903 -13.20593 -12.90003 -12.73909 -12.43442 -12.11660 -12.01758 -11.65617 -11.50221 -11.39370 -11.27173 -11.20687 -11.17587 -11.01617 -10.95104 -10.77317 -10.57708 -10.38918 -10.22237 -9.73985 -9.53967 -9.16353 -8.91731 -8.50252 -8.32526 -7.97517 -6.09756 -4.12859 -0.00462 1.08087 1.49494 1.56249 3.04506 3.28132 3.32008 3.33331 3.35954 4.37213 4.42192 4.57636 4.61689 4.76291 4.83246 4.94453 5.00421 5.06879 5.18698 5.30739 5.32544 5.43205 5.51333 5.59666 5.79904 5.82724 5.97228 6.01154 6.03133 6.09039 6.15599 6.18217 6.28291 6.39777 6.47166 6.57462 6.65662 6.67891 6.79653 7.04650 7.05545 7.16483 7.68819 7.87684 7.88066 8.06272 8.34570 8.89425 9.51892 10.99696 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.006156 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.046372 B = 4547.644225 C = 6037.528684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.127 3.873 4 C -0.150 4.150 5 C -0.062 4.062 6 C -0.033 4.033 7 C -0.081 4.081 8 C 0.057 3.943 9 H 0.043 0.957 10 C -0.139 4.139 11 N -0.480 5.480 12 C 0.010 3.990 13 C 0.041 3.959 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.068 3.932 17 N -0.887 5.887 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.002 4.002 23 C -0.009 4.009 24 N 0.036 4.964 25 O -0.172 6.172 26 O -0.150 6.150 27 C -0.094 4.094 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.261 0.739 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -0.449 14.555 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.081 3.919 4 C -0.169 4.169 5 C -0.080 4.080 6 C -0.035 4.035 7 C -0.118 4.118 8 C -0.052 4.052 9 H 0.061 0.939 10 C -0.196 4.196 11 N -0.203 5.203 12 C -0.119 4.119 13 C 0.022 3.978 14 C -0.553 4.553 15 H 0.074 0.926 16 C -0.134 4.134 17 N -0.525 5.525 18 Si 0.716 3.284 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.131 4.131 23 C -0.092 4.092 24 N 0.553 4.447 25 O -0.385 6.385 26 O -0.367 6.367 27 C -0.114 4.114 28 H 0.122 0.878 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.671 -0.357 14.918 15.159 hybrid contribution 0.988 -1.279 -1.206 2.016 sum -1.684 -1.636 13.712 13.911 Atomic orbital electron populations 1.23173 0.77530 1.04490 1.01855 1.86075 1.21982 1.25705 1.88577 1.18465 0.90915 0.85042 0.97517 1.21667 1.01243 0.92000 1.01950 1.20906 0.92383 0.98206 0.96534 1.19772 0.93754 0.94435 0.95547 1.21020 1.00669 0.91313 0.98815 1.22079 0.92915 0.97645 0.92565 0.93891 1.21756 0.99322 0.96614 1.01949 1.68917 1.24482 1.20939 1.05980 1.24031 0.98543 0.90028 0.99329 1.20103 0.94522 0.91886 0.91265 1.21011 0.98302 1.19226 1.16797 0.92590 1.24978 0.94753 0.97067 0.96635 1.69951 1.05317 1.35460 1.41731 0.86717 0.78354 0.80555 0.82808 1.20206 1.21195 1.20040 1.23926 0.99416 1.00350 0.89361 1.20447 0.79199 0.95561 1.14016 1.43441 1.03423 1.00290 0.97515 1.94526 1.64352 1.25951 1.53649 1.94460 1.73642 1.16114 1.52450 1.19898 0.92593 0.97217 1.01660 0.87816 0.92480 0.91727 0.83747 0.83195 0.88108 0.89936 0.92556 0.92350 0.92131 0.94088 0.91933 0.91870 0.92970 0.92013 0.92947 0.82679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.02 10.50 -19.41 -0.20 -4.23 16 3 C 0.13 1.78 6.69 -39.22 -0.26 1.52 16 4 C -0.15 -1.90 9.04 -39.43 -0.36 -2.26 16 5 C -0.06 -0.83 7.55 -39.60 -0.30 -1.13 16 6 C -0.03 -0.50 3.56 -104.60 -0.37 -0.88 16 7 C -0.08 -1.18 4.31 -27.88 -0.12 -1.30 16 8 C 0.06 0.98 1.35 -67.71 -0.09 0.88 16 9 H 0.04 0.85 5.90 -51.93 -0.31 0.54 16 10 C -0.14 -2.04 9.09 37.16 0.34 -1.70 16 11 N -0.48 -9.32 6.12 -236.43 -1.45 -10.76 16 12 C 0.01 0.22 5.26 -7.49 -0.04 0.18 16 13 C 0.04 1.03 3.77 -91.22 -0.34 0.68 16 14 C -0.52 -14.17 8.82 -34.44 -0.30 -14.47 16 15 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 17 N -0.89 -25.15 13.26 55.43 0.74 -24.41 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.00 -0.04 6.02 -7.46 -0.04 -0.08 16 23 C -0.01 -0.14 6.71 -79.98 -0.54 -0.68 16 24 N 0.04 0.63 4.31 33.95 0.15 0.78 16 25 O -0.17 -3.12 18.46 -29.46 -0.54 -3.66 16 26 O -0.15 -2.58 13.61 -29.46 -0.40 -2.98 16 27 C -0.09 -1.44 9.50 -39.43 -0.37 -1.81 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.14 1.43 6.30 -52.48 -0.33 1.10 16 32 H 0.15 1.78 8.01 -52.49 -0.42 1.36 16 33 H 0.10 1.40 5.97 -51.93 -0.31 1.09 16 34 H 0.08 1.08 7.97 -51.93 -0.41 0.66 16 35 H 0.06 0.85 7.03 -51.93 -0.36 0.49 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.04 1.01 7.49 -51.93 -0.39 0.62 16 39 H 0.06 1.42 6.35 -51.93 -0.33 1.09 16 40 H 0.06 1.71 8.11 -51.93 -0.42 1.29 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.13 7.61 -51.93 -0.40 0.74 16 44 H 0.16 2.25 7.62 -52.48 -0.40 1.85 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -30.31 356.42 -9.39 -39.70 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.11 Total: 1.92 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.91 Total: -18.06 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: -0.57 Total: -34.40 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.15 Total: -10.87 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.31 -9.39 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170326671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.152 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds