Wall clock time and date at job start Tue Mar 31 2020 13:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 116.99576 * 2 1 4 4 C 1.38750 * 120.06088 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94880 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.04834 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.93784 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47101 * 256.81623 * 7 6 5 9 9 H 1.08999 * 109.47376 * 305.00125 * 8 7 6 10 10 C 1.53005 * 109.47319 * 185.00015 * 8 7 6 11 11 N 1.46904 * 109.46967 * 65.00255 * 8 7 6 12 12 C 1.47477 * 111.00147 * 275.96794 * 11 8 7 13 13 C 1.53503 * 87.93544 * 221.29843 * 12 11 8 14 14 C 1.50700 * 114.17194 * 139.67221 * 13 12 11 15 15 H 1.08001 * 119.99590 * 266.15795 * 14 13 12 16 16 C 1.37879 * 120.00251 * 86.16001 * 14 13 12 17 17 N 1.31508 * 119.99490 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00069 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47363 * 59.99850 * 18 16 14 20 20 H 1.48497 * 109.47097 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47469 * 299.99880 * 18 16 14 22 22 C 1.47487 * 110.99790 * 179.97438 * 11 8 7 23 23 C 1.38239 * 120.11876 * 0.27522 * 6 5 4 24 24 N 1.47999 * 119.97576 * 179.70384 * 23 6 5 25 25 O 1.21793 * 120.00261 * 185.48919 * 24 23 6 26 26 O 1.21801 * 119.99948 * 5.49053 * 24 23 6 27 27 C 1.38166 * 120.05076 * 359.44899 * 23 6 5 28 28 H 1.09001 * 109.46989 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47101 * 299.99125 * 1 2 3 30 30 H 1.08996 * 109.47630 * 59.99915 * 1 2 3 31 31 H 1.08004 * 120.02554 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.97419 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47134 * 136.81897 * 7 6 5 34 34 H 1.09000 * 109.47697 * 16.81861 * 7 6 5 35 35 H 1.09001 * 109.47417 * 180.02562 * 10 8 7 36 36 H 1.08999 * 109.46987 * 300.00349 * 10 8 7 37 37 H 1.09000 * 109.46942 * 60.00180 * 10 8 7 38 38 H 1.08999 * 113.47354 * 336.06853 * 12 11 8 39 39 H 1.08996 * 113.47343 * 106.52914 * 12 11 8 40 40 H 1.08997 * 114.17034 * 272.37687 * 13 12 11 41 41 H 0.97008 * 119.99434 * 180.02562 * 17 16 14 42 42 H 1.08999 * 113.47487 * 253.46755 * 22 11 8 43 43 H 1.08997 * 113.47377 * 23.87372 * 22 11 8 44 44 H 1.08007 * 120.02754 * 180.27090 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6757 -0.0005 7 6 3.9859 5.0185 -0.0005 8 6 4.5100 5.3239 -1.4051 9 1 5.1524 4.5088 -1.7384 10 6 5.3117 6.6268 -1.3783 11 7 3.3777 5.4646 -2.3304 12 6 2.9341 4.1487 -2.8269 13 6 2.7767 4.7871 -4.2140 14 6 3.2366 3.9123 -5.3516 15 1 4.2435 4.0050 -5.7311 16 6 2.3720 2.9936 -5.9080 17 7 1.1461 2.8805 -5.4455 18 14 2.9423 1.9088 -7.3177 19 1 4.0997 1.0902 -6.8754 20 1 1.8331 1.0132 -7.7331 21 1 3.3478 2.7602 -8.4648 22 6 3.8458 5.7607 -3.6973 23 6 4.0559 2.5172 -0.0063 24 7 5.5338 2.5968 -0.0135 25 8 6.1979 1.5814 -0.1194 26 8 6.0859 3.6779 0.0866 27 6 3.4311 1.2849 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2127 2.3203 0.0005 32 1 1.3339 4.5114 0.0000 33 1 4.8188 5.0020 0.7023 34 1 3.2746 5.7888 0.2972 35 1 5.6847 6.8446 -2.3791 36 1 4.6693 7.4419 -1.0451 37 1 6.1519 6.5224 -0.6918 38 1 3.7106 3.3849 -2.7859 39 1 1.9914 3.8160 -2.3924 40 1 1.8027 5.2448 -4.3867 41 1 0.5380 2.2338 -5.8367 42 1 3.6754 6.7938 -4.0004 43 1 4.8661 5.4282 -3.8884 44 1 4.0207 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170326671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:44 Heat of formation + Delta-G solvation = 7.978413 kcal Electronic energy + Delta-G solvation = -28563.537727 eV Core-core repulsion = 24678.393493 eV Total energy + Delta-G solvation = -3885.144234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.45926 -41.55065 -40.83584 -38.86224 -37.81142 -35.66700 -34.27983 -33.05030 -32.10457 -29.27619 -29.07635 -27.51009 -27.01362 -26.14391 -25.71207 -23.83994 -23.04011 -21.54532 -20.55690 -20.31747 -19.83522 -18.73515 -18.48738 -18.12772 -17.59800 -16.99642 -16.88663 -16.79360 -16.40166 -15.87783 -15.28810 -15.23436 -14.93137 -14.58529 -14.10288 -13.97346 -13.66847 -13.50413 -13.41700 -13.17485 -13.06789 -12.91175 -12.78165 -12.55885 -12.45953 -12.43237 -12.31651 -12.24689 -12.17052 -11.76768 -11.67440 -11.47914 -11.09258 -10.88170 -10.60230 -10.46764 -9.74800 -9.41383 -8.20598 -6.29448 -1.25138 -0.02699 0.25175 0.33688 1.35989 1.36866 1.44072 2.10515 2.22867 2.36578 3.08609 3.24383 3.36193 3.44163 3.61875 3.76442 3.88823 3.98039 4.13229 4.24084 4.28841 4.35496 4.38298 4.39864 4.46034 4.53033 4.63397 4.69605 4.73650 4.75783 4.87398 4.91592 4.92571 5.00991 5.05132 5.12458 5.20093 5.23384 5.25174 5.45696 5.54932 5.58725 5.82436 6.10097 6.27680 6.36685 6.53034 6.76883 7.37514 8.88337 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.006156 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.046372 B = 4547.644225 C = 6037.528684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.125 3.875 4 C -0.142 4.142 5 C -0.064 4.064 6 C -0.045 4.045 7 C -0.076 4.076 8 C 0.056 3.944 9 H 0.014 0.986 10 C -0.134 4.134 11 N -0.460 5.460 12 C 0.032 3.968 13 C 0.022 3.978 14 C -0.536 4.536 15 H 0.048 0.952 16 C 0.023 3.977 17 N -0.911 5.911 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.278 1.278 21 H -0.267 1.267 22 C 0.010 3.990 23 C -0.025 4.025 24 N 0.036 4.964 25 O -0.211 6.211 26 O -0.139 6.139 27 C -0.114 4.114 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.177 0.823 32 H 0.173 0.827 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.014 0.986 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.263 0.737 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 0.430 15.345 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.079 3.921 4 C -0.161 4.161 5 C -0.082 4.082 6 C -0.047 4.047 7 C -0.113 4.113 8 C -0.053 4.053 9 H 0.032 0.968 10 C -0.192 4.192 11 N -0.183 5.183 12 C -0.097 4.097 13 C 0.003 3.997 14 C -0.574 4.574 15 H 0.066 0.934 16 C -0.177 4.177 17 N -0.549 5.549 18 Si 0.770 3.230 19 H -0.205 1.205 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.119 4.119 23 C -0.109 4.109 24 N 0.550 4.450 25 O -0.414 6.414 26 O -0.360 6.360 27 C -0.134 4.134 28 H 0.143 0.857 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.194 0.806 32 H 0.190 0.810 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.032 0.968 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.837 0.457 15.704 16.172 hybrid contribution 1.266 -1.525 -1.430 2.444 sum -2.571 -1.068 14.274 14.543 Atomic orbital electron populations 1.23520 0.75294 1.06388 1.02843 1.86071 1.24292 1.25299 1.88290 1.18588 0.90568 0.86075 0.96908 1.22053 1.02823 0.91146 1.00029 1.21249 0.91826 0.99437 0.95731 1.19991 0.94513 0.94219 0.95937 1.21013 1.01534 0.91668 0.97070 1.22138 0.91857 0.98141 0.93186 0.96832 1.21743 0.99818 0.95518 1.02100 1.68881 1.25467 1.18488 1.05417 1.23604 0.97609 0.90479 0.98009 1.20081 0.94500 0.93244 0.91914 1.21307 0.98106 1.20027 1.17939 0.93412 1.25655 0.94937 0.98211 0.98873 1.70031 1.06030 1.36072 1.42771 0.85825 0.77919 0.79010 0.80259 1.20499 1.20308 1.19216 1.23746 0.97755 1.00319 0.90043 1.20624 0.78160 0.96552 1.15543 1.43664 1.04176 1.00039 0.97150 1.94518 1.65006 1.26219 1.55704 1.94408 1.74189 1.16037 1.51403 1.20033 0.93622 0.96989 1.02749 0.85698 0.89947 0.92120 0.80572 0.80959 0.87311 0.87550 0.93363 0.90635 0.90429 0.96811 0.92046 0.94211 0.92789 0.90305 0.93703 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -8.13 10.50 -92.36 -0.97 -9.09 16 3 C 0.13 3.43 6.69 22.51 0.15 3.58 16 4 C -0.14 -3.31 9.04 22.37 0.20 -3.11 16 5 C -0.06 -1.59 7.55 22.26 0.17 -1.43 16 6 C -0.04 -1.30 3.56 -19.85 -0.07 -1.37 16 7 C -0.08 -2.04 4.31 29.85 0.13 -1.91 16 8 C 0.06 1.83 1.35 44.92 0.06 1.89 16 9 H 0.01 0.54 5.90 -2.39 -0.01 0.52 16 10 C -0.13 -3.62 9.09 71.98 0.65 -2.96 16 11 N -0.46 -17.26 6.12 -901.92 -5.52 -22.78 16 12 C 0.03 1.45 5.26 83.61 0.44 1.89 16 13 C 0.02 1.09 3.77 -11.18 -0.04 1.05 16 14 C -0.54 -29.89 8.82 25.60 0.23 -29.66 16 15 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 16 C 0.02 1.30 5.46 84.66 0.46 1.77 16 17 N -0.91 -51.81 13.26 21.45 0.28 -51.53 16 18 Si 0.94 43.92 29.54 68.60 2.03 45.95 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C 0.01 0.43 6.02 83.62 0.50 0.93 16 23 C -0.03 -0.83 6.71 36.36 0.24 -0.59 16 24 N 0.04 1.28 4.31 -46.52 -0.20 1.08 16 25 O -0.21 -8.03 18.46 18.90 0.35 -7.68 16 26 O -0.14 -4.76 13.61 18.88 0.26 -4.50 16 27 C -0.11 -3.58 9.50 22.37 0.21 -3.36 16 28 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 0.86 7.66 -2.39 -0.02 0.84 16 30 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 31 H 0.18 2.89 6.30 -2.91 -0.02 2.87 16 32 H 0.17 3.48 8.01 -2.91 -0.02 3.45 16 33 H 0.11 2.79 5.97 -2.39 -0.01 2.78 16 34 H 0.11 2.38 7.97 -2.39 -0.02 2.36 16 35 H 0.05 1.37 7.03 -2.39 -0.02 1.35 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.01 0.69 7.49 -2.39 -0.02 0.67 16 39 H 0.06 2.75 6.35 -2.39 -0.02 2.73 16 40 H 0.04 2.18 8.11 -2.39 -0.02 2.16 16 41 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 42 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.04 1.94 7.61 -2.39 -0.02 1.93 16 44 H 0.15 4.67 7.62 -2.91 -0.02 4.65 16 Total: -1.00 -66.32 356.42 1.69 -64.62 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.01 Total: 15.92 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 4.45 Total: -31.98 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -5.44 Total: -73.23 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.36 Total: -21.28 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -66.32 1.69 -64.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170326671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.603 kcal (2) G-P(sol) polarization free energy of solvation -66.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds