Wall clock time and date at job start Tue Mar 31 2020 13:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34732 * 116.99811 * 2 1 4 4 O 1.21473 * 119.99697 * 359.97438 * 3 2 1 5 5 C 1.47697 * 119.99901 * 179.97438 * 3 2 1 6 6 C 1.39721 * 120.01556 * 0.24819 * 5 3 2 7 7 C 1.37691 * 119.98276 * 180.25481 * 6 5 3 8 8 C 1.39587 * 120.01291 * 359.49046 * 7 6 5 9 9 C 1.48038 * 119.98096 * 180.23222 * 8 7 6 10 10 N 1.30042 * 119.99943 * 0.02562 * 9 8 7 11 11 O 1.41608 * 119.99712 * 172.34258 * 10 9 8 12 12 N 1.38513 * 119.99788 * 180.02562 * 9 8 7 13 13 C 1.46495 * 119.99807 * 174.32553 * 12 9 8 14 14 H 1.09000 * 109.47337 * 325.61384 * 13 12 9 15 15 C 1.52994 * 109.47335 * 85.61939 * 13 12 9 16 16 C 1.53001 * 109.47022 * 205.61868 * 13 12 9 17 17 C 1.53003 * 109.47156 * 64.99918 * 16 13 12 18 18 C 1.50701 * 109.47317 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99686 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99945 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99977 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99779 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47143 * 59.99594 * 22 20 18 24 24 H 1.48503 * 109.47031 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46966 * 299.99510 * 22 20 18 26 26 C 1.39583 * 120.03373 * 0.26015 * 8 7 6 27 27 C 1.37683 * 120.01437 * 359.97438 * 26 8 7 28 28 H 1.08995 * 109.47286 * 60.00318 * 1 2 3 29 29 H 1.09004 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46838 * 300.00216 * 1 2 3 31 31 H 1.08002 * 120.00858 * 0.02562 * 6 5 3 32 32 H 1.07995 * 119.99559 * 179.77410 * 7 6 5 33 33 H 0.96693 * 114.00024 * 179.97438 * 11 10 9 34 34 H 0.96996 * 120.00020 * 354.31976 * 12 9 8 35 35 H 1.08995 * 109.47246 * 299.99789 * 15 13 12 36 36 H 1.09002 * 109.47610 * 59.99932 * 15 13 12 37 37 H 1.09007 * 109.47179 * 179.97438 * 15 13 12 38 38 H 1.09002 * 109.47393 * 185.00033 * 16 13 12 39 39 H 1.09000 * 109.47165 * 305.00290 * 16 13 12 40 40 H 1.09002 * 109.47064 * 300.00317 * 17 16 13 41 41 H 1.08993 * 109.47273 * 59.99697 * 17 16 13 42 42 H 0.97003 * 119.99717 * 180.02562 * 21 20 18 43 43 H 1.08001 * 119.99026 * 180.02562 * 26 8 7 44 44 H 1.08006 * 120.00717 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5386 1.2778 0.0006 6 6 4.2999 0.1062 -0.0041 7 6 5.6749 0.1791 0.0017 8 6 6.3082 1.4230 0.0016 9 6 7.7865 1.5005 0.0027 10 7 8.4948 0.4099 0.0032 11 8 9.8999 0.4781 -0.1591 12 7 8.4153 2.7347 0.0031 13 6 9.8726 2.8142 0.1296 14 1 10.2250 2.0141 0.7805 15 6 10.5133 2.6674 -1.2520 16 6 10.2593 4.1674 0.7298 17 6 9.7231 4.2631 2.1596 18 6 10.1034 5.5962 2.7506 19 1 10.6712 6.3042 2.1651 20 6 9.7274 5.9115 4.0391 21 7 9.0364 5.0491 4.7521 22 14 10.1995 7.5636 4.7719 23 1 9.6157 8.6545 3.9506 24 1 9.6789 7.6566 6.1596 25 1 11.6787 7.6935 4.7880 26 6 5.5482 2.5939 0.0010 27 6 4.1733 2.5225 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.8100 -0.8563 -0.0086 32 1 6.2635 -0.7263 0.0018 33 1 10.3397 -0.3829 -0.1449 34 1 7.8907 3.5463 -0.0805 35 1 10.2378 1.7034 -1.6796 36 1 10.1609 3.4676 -1.9029 37 1 11.5976 2.7270 -1.1579 38 1 11.3451 4.2626 0.7419 39 1 9.8310 4.9681 0.1269 40 1 8.6373 4.1679 2.1475 41 1 10.1512 3.4624 2.7626 42 1 8.7716 5.2712 5.6585 43 1 6.0390 3.5559 0.0005 44 1 3.5854 3.4285 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:04 Heat of formation + Delta-G solvation = -46.064957 kcal Electronic energy + Delta-G solvation = -26281.327321 eV Core-core repulsion = 22393.839591 eV Total energy + Delta-G solvation = -3887.487731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79791 -39.45696 -37.99738 -36.65699 -35.29255 -34.10172 -32.78628 -31.44532 -30.93918 -29.59748 -28.71117 -28.00037 -25.17719 -24.75092 -22.77326 -21.98506 -21.29286 -20.26830 -19.78827 -18.32743 -17.93752 -17.19549 -16.60604 -16.45307 -16.08126 -15.32172 -15.16309 -14.70348 -14.61196 -14.52235 -14.11647 -13.82092 -13.69781 -13.61712 -13.10863 -12.81866 -12.70487 -12.46509 -12.44286 -12.17205 -11.97453 -11.46220 -11.33964 -11.18533 -11.09531 -10.92719 -10.87693 -10.79127 -10.49047 -10.27664 -9.84519 -9.58196 -9.33297 -9.24255 -9.07987 -8.89900 -8.35407 -7.56312 -5.99986 -4.03142 0.20755 1.16737 2.06307 2.39345 2.86858 3.32046 3.36465 3.36974 3.38976 3.55108 3.73160 4.42560 4.44903 4.61545 4.73137 4.80621 4.88725 5.05984 5.10088 5.17301 5.24060 5.35291 5.46868 5.58372 5.79281 5.80776 5.85556 5.92770 6.01859 6.12105 6.16918 6.22678 6.25760 6.43903 6.53396 6.54335 6.78772 7.02485 7.08183 7.40829 7.46552 7.67339 7.80947 7.99747 8.01930 8.30580 8.41602 9.04128 9.61064 11.10750 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.003131 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.153434 B = 8939.532023 C =10891.402602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.510 3.490 4 O -0.504 6.504 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.088 4.088 8 C 0.000 4.000 9 C 0.406 3.594 10 N -0.423 5.423 11 O -0.396 6.396 12 N -0.723 5.723 13 C 0.149 3.851 14 H 0.101 0.899 15 C -0.155 4.155 16 C -0.123 4.123 17 C 0.027 3.973 18 C -0.524 4.524 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.102 4.102 27 C -0.052 4.052 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.375 0.625 34 H 0.393 0.607 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.017 0.983 41 H 0.013 0.987 42 H 0.261 0.739 43 H 0.140 0.860 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.743 -12.762 -12.881 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.355 3.645 4 O -0.393 6.393 5 C -0.122 4.122 6 C -0.084 4.084 7 C -0.108 4.108 8 C -0.002 4.002 9 C 0.130 3.870 10 N -0.190 5.190 11 O -0.297 6.297 12 N -0.365 5.365 13 C 0.045 3.955 14 H 0.119 0.881 15 C -0.214 4.214 16 C -0.161 4.161 17 C -0.010 4.010 18 C -0.562 4.562 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.122 4.122 27 C -0.070 4.070 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.222 0.778 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.158 0.842 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.970 -12.868 -12.645 21.651 hybrid contribution 0.354 1.617 0.560 1.748 sum -11.616 -11.251 -12.085 20.188 Atomic orbital electron populations 1.23295 0.75870 1.03812 1.02726 1.86547 1.23638 1.32608 1.84344 1.21234 0.89149 0.81457 0.72651 1.90846 1.66776 1.36016 1.45650 1.19184 0.88893 0.95158 1.08986 1.21400 0.93452 0.98014 0.95515 1.21266 0.93930 0.97612 0.97967 1.18442 0.88394 0.94317 0.99059 1.21105 0.90757 0.83394 0.91726 1.76850 0.90540 1.20998 1.30594 1.88824 1.13261 1.32995 1.94635 1.45606 1.07871 1.05115 1.77877 1.21466 0.77571 1.00080 0.96358 0.88116 1.22363 1.00176 1.01350 0.97509 1.22031 1.00755 0.93480 0.99821 1.19044 0.96306 0.96617 0.89063 1.21232 1.34848 1.01604 0.98539 0.92864 1.25018 0.95199 0.96901 0.97226 1.69959 1.38095 1.35085 1.10083 0.86689 0.78836 0.84445 0.78204 1.20280 1.21300 1.20277 1.21158 0.93274 0.98271 0.99493 1.21135 0.94043 0.96958 0.94836 0.91788 0.87910 0.91715 0.83912 0.83524 0.77798 0.77152 0.91547 0.94171 0.92609 0.91952 0.93227 0.96496 0.96911 0.92973 0.84204 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.47 9.80 -40.58 -0.40 -3.87 16 3 C 0.51 6.03 7.90 34.59 0.27 6.30 16 4 O -0.50 -7.12 16.12 -19.24 -0.31 -7.43 16 5 C -0.12 -1.37 5.88 -104.93 -0.62 -1.99 16 6 C -0.07 -0.66 9.60 -39.23 -0.38 -1.04 16 7 C -0.09 -0.99 9.56 -39.28 -0.38 -1.37 16 8 C 0.00 0.00 5.88 -104.87 -0.62 -0.61 16 9 C 0.41 6.29 7.77 -153.78 -1.19 5.10 16 10 N -0.42 -6.57 11.25 32.63 0.37 -6.20 16 11 O -0.40 -5.74 7.98 -11.47 -0.09 -5.83 16 12 N -0.72 -11.72 4.60 -51.95 -0.24 -11.96 16 13 C 0.15 2.57 2.18 -67.94 -0.15 2.43 16 14 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 15 C -0.16 -2.31 8.77 37.15 0.33 -1.98 16 16 C -0.12 -2.47 4.70 -26.73 -0.13 -2.59 16 17 C 0.03 0.68 4.86 -27.88 -0.14 0.55 16 18 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 19 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 22 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.10 -1.24 9.54 -39.28 -0.37 -1.62 16 27 C -0.05 -0.60 9.58 -39.23 -0.38 -0.97 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.14 1.11 7.60 -52.49 -0.40 0.72 16 32 H 0.15 1.54 7.54 -52.49 -0.40 1.15 16 33 H 0.38 3.88 9.28 45.56 0.42 4.31 16 34 H 0.39 5.99 6.74 -40.82 -0.27 5.72 16 35 H 0.07 0.99 6.13 -51.93 -0.32 0.67 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.45 7.75 -51.93 -0.40 0.04 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.14 1.60 6.41 -52.49 -0.34 1.26 16 44 H 0.14 1.57 7.64 -52.48 -0.40 1.17 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -33.78 371.31 -7.77 -41.55 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.33 Total: 7.63 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -3.08 Total: -9.97 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.86 Total: -44.35 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.80 Total: -17.13 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.78 -7.77 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.514 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds