Wall clock time and date at job start Tue Mar 31 2020 13:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34732 * 116.99811 * 2 1 4 4 O 1.21473 * 119.99697 * 359.97438 * 3 2 1 5 5 C 1.47697 * 119.99901 * 179.97438 * 3 2 1 6 6 C 1.39721 * 120.01556 * 0.24819 * 5 3 2 7 7 C 1.37691 * 119.98276 * 180.25481 * 6 5 3 8 8 C 1.39587 * 120.01291 * 359.49046 * 7 6 5 9 9 C 1.48038 * 119.98096 * 180.23222 * 8 7 6 10 10 N 1.30042 * 119.99943 * 0.02562 * 9 8 7 11 11 O 1.41608 * 119.99712 * 172.34258 * 10 9 8 12 12 N 1.38513 * 119.99788 * 180.02562 * 9 8 7 13 13 C 1.46495 * 119.99807 * 174.32553 * 12 9 8 14 14 H 1.09000 * 109.47337 * 325.61384 * 13 12 9 15 15 C 1.52994 * 109.47335 * 85.61939 * 13 12 9 16 16 C 1.53001 * 109.47022 * 205.61868 * 13 12 9 17 17 C 1.53003 * 109.47156 * 64.99918 * 16 13 12 18 18 C 1.50701 * 109.47317 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99686 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99945 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99977 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99779 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47143 * 59.99594 * 22 20 18 24 24 H 1.48503 * 109.47031 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46966 * 299.99510 * 22 20 18 26 26 C 1.39583 * 120.03373 * 0.26015 * 8 7 6 27 27 C 1.37683 * 120.01437 * 359.97438 * 26 8 7 28 28 H 1.08995 * 109.47286 * 60.00318 * 1 2 3 29 29 H 1.09004 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46838 * 300.00216 * 1 2 3 31 31 H 1.08002 * 120.00858 * 0.02562 * 6 5 3 32 32 H 1.07995 * 119.99559 * 179.77410 * 7 6 5 33 33 H 0.96693 * 114.00024 * 179.97438 * 11 10 9 34 34 H 0.96996 * 120.00020 * 354.31976 * 12 9 8 35 35 H 1.08995 * 109.47246 * 299.99789 * 15 13 12 36 36 H 1.09002 * 109.47610 * 59.99932 * 15 13 12 37 37 H 1.09007 * 109.47179 * 179.97438 * 15 13 12 38 38 H 1.09002 * 109.47393 * 185.00033 * 16 13 12 39 39 H 1.09000 * 109.47165 * 305.00290 * 16 13 12 40 40 H 1.09002 * 109.47064 * 300.00317 * 17 16 13 41 41 H 1.08993 * 109.47273 * 59.99697 * 17 16 13 42 42 H 0.97003 * 119.99717 * 180.02562 * 21 20 18 43 43 H 1.08001 * 119.99026 * 180.02562 * 26 8 7 44 44 H 1.08006 * 120.00717 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5386 1.2778 0.0006 6 6 4.2999 0.1062 -0.0041 7 6 5.6749 0.1791 0.0017 8 6 6.3082 1.4230 0.0016 9 6 7.7865 1.5005 0.0027 10 7 8.4948 0.4099 0.0032 11 8 9.8999 0.4781 -0.1591 12 7 8.4153 2.7347 0.0031 13 6 9.8726 2.8142 0.1296 14 1 10.2250 2.0141 0.7805 15 6 10.5133 2.6674 -1.2520 16 6 10.2593 4.1674 0.7298 17 6 9.7231 4.2631 2.1596 18 6 10.1034 5.5962 2.7506 19 1 10.6712 6.3042 2.1651 20 6 9.7274 5.9115 4.0391 21 7 9.0364 5.0491 4.7521 22 14 10.1995 7.5636 4.7719 23 1 9.6157 8.6545 3.9506 24 1 9.6789 7.6566 6.1596 25 1 11.6787 7.6935 4.7880 26 6 5.5482 2.5939 0.0010 27 6 4.1733 2.5225 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.8100 -0.8563 -0.0086 32 1 6.2635 -0.7263 0.0018 33 1 10.3397 -0.3829 -0.1449 34 1 7.8907 3.5463 -0.0805 35 1 10.2378 1.7034 -1.6796 36 1 10.1609 3.4676 -1.9029 37 1 11.5976 2.7270 -1.1579 38 1 11.3451 4.2626 0.7419 39 1 9.8310 4.9681 0.1269 40 1 8.6373 4.1679 2.1475 41 1 10.1512 3.4624 2.7626 42 1 8.7716 5.2712 5.6585 43 1 6.0390 3.5559 0.0005 44 1 3.5854 3.4285 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:03 Heat of formation + Delta-G solvation = -66.404632 kcal Electronic energy + Delta-G solvation = -26282.209316 eV Core-core repulsion = 22393.839591 eV Total energy + Delta-G solvation = -3888.369725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.68341 -40.47825 -39.14640 -37.53382 -36.67569 -35.48577 -34.59274 -32.38457 -32.18133 -31.13491 -29.99468 -28.66070 -27.02956 -25.74944 -23.77422 -23.40254 -22.53031 -21.68249 -20.94639 -19.29202 -19.06065 -18.44639 -18.08546 -17.41391 -17.35093 -16.58129 -16.43553 -16.27974 -15.67208 -15.57674 -15.29737 -14.86248 -14.63670 -14.59238 -14.47573 -14.30257 -14.09140 -13.70079 -13.61692 -13.33593 -13.02311 -12.98385 -12.83718 -12.66431 -12.44618 -12.22197 -12.08438 -11.87808 -11.82710 -11.71874 -11.54983 -11.33462 -11.03190 -10.70327 -10.55087 -10.12672 -10.01069 -8.78448 -8.19533 -6.31083 -0.74432 0.27865 1.08005 1.38835 1.41311 1.49246 1.61851 1.81132 2.30764 2.35240 2.40029 2.76176 3.13342 3.58943 3.73516 3.85654 3.99446 4.15573 4.18228 4.29418 4.32342 4.35803 4.40657 4.47279 4.62123 4.73581 4.74742 4.86797 4.93458 4.99820 5.06016 5.13732 5.16276 5.24341 5.26784 5.30023 5.44370 5.50957 5.59927 5.65700 5.83455 5.86305 6.24036 6.35406 6.59746 6.78603 6.87039 7.19394 7.38359 8.91296 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.003131 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.153434 B = 8939.532023 C =10891.402602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.513 3.487 4 O -0.533 6.533 5 C -0.126 4.126 6 C -0.051 4.051 7 C -0.085 4.085 8 C -0.018 4.018 9 C 0.398 3.602 10 N -0.430 5.430 11 O -0.405 6.405 12 N -0.730 5.730 13 C 0.158 3.842 14 H 0.081 0.919 15 C -0.142 4.142 16 C -0.110 4.110 17 C 0.036 3.964 18 C -0.544 4.544 19 H 0.060 0.940 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.961 3.039 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.268 1.268 26 C -0.107 4.107 27 C -0.056 4.056 28 H 0.064 0.936 29 H 0.137 0.863 30 H 0.061 0.939 31 H 0.171 0.829 32 H 0.156 0.844 33 H 0.392 0.608 34 H 0.396 0.604 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.058 0.942 40 H -0.003 1.003 41 H -0.024 1.024 42 H 0.262 0.738 43 H 0.141 0.859 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 -13.013 -13.729 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.359 3.641 4 O -0.424 6.424 5 C -0.128 4.128 6 C -0.069 4.069 7 C -0.105 4.105 8 C -0.020 4.020 9 C 0.122 3.878 10 N -0.196 5.196 11 O -0.309 6.309 12 N -0.373 5.373 13 C 0.054 3.946 14 H 0.099 0.901 15 C -0.201 4.201 16 C -0.148 4.148 17 C -0.001 4.001 18 C -0.582 4.582 19 H 0.078 0.922 20 C -0.197 4.197 21 N -0.572 5.572 22 Si 0.786 3.214 23 H -0.190 1.190 24 H -0.211 1.211 25 H -0.193 1.193 26 C -0.127 4.127 27 C -0.074 4.074 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.080 0.920 31 H 0.188 0.812 32 H 0.173 0.827 33 H 0.241 0.759 34 H 0.231 0.769 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.016 0.984 41 H -0.005 1.005 42 H 0.071 0.929 43 H 0.159 0.841 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.232 -13.153 -13.513 22.477 hybrid contribution 0.381 1.589 0.840 1.838 sum -11.852 -11.563 -12.673 20.852 Atomic orbital electron populations 1.23623 0.74085 1.06061 1.02678 1.86535 1.25356 1.31271 1.83690 1.21280 0.89196 0.81661 0.71933 1.90833 1.67365 1.37057 1.47179 1.19319 0.89085 0.95496 1.08853 1.21622 0.92778 0.98712 0.93757 1.21389 0.94487 0.97161 0.97438 1.18532 0.87369 0.95427 1.00663 1.21507 0.91828 0.82954 0.91505 1.76785 0.91068 1.21121 1.30658 1.88767 1.12838 1.34745 1.94555 1.45559 1.07490 1.05731 1.78485 1.21229 0.78562 0.97441 0.97363 0.90087 1.22215 1.00467 1.01729 0.95665 1.21849 1.00676 0.95708 0.96603 1.18879 0.94928 0.94471 0.91822 1.21704 1.34740 1.02660 0.99089 0.92175 1.25955 0.95035 1.00912 0.97802 1.70105 1.39327 1.37300 1.10445 0.85558 0.78880 0.79660 0.77293 1.19050 1.21070 1.19280 1.21182 0.93509 0.98218 0.99745 1.21199 0.93808 0.97522 0.94903 0.91675 0.84528 0.92011 0.81164 0.82666 0.75852 0.76858 0.91289 0.93469 0.91674 0.91660 0.92284 0.98426 1.00532 0.92938 0.84132 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.26 9.80 -56.42 -0.55 -6.81 16 3 C 0.51 11.66 7.90 70.32 0.56 12.21 16 4 O -0.53 -14.92 16.12 19.92 0.32 -14.60 16 5 C -0.13 -2.75 5.88 -20.06 -0.12 -2.86 16 6 C -0.05 -0.94 9.60 22.50 0.22 -0.72 16 7 C -0.08 -1.83 9.56 22.47 0.21 -1.61 16 8 C -0.02 -0.46 5.88 -20.03 -0.12 -0.58 16 9 C 0.40 12.35 7.77 136.31 1.06 13.40 16 10 N -0.43 -13.21 11.25 -50.68 -0.57 -13.78 16 11 O -0.40 -11.50 7.98 -38.80 -0.31 -11.81 16 12 N -0.73 -23.86 4.60 -318.26 -1.46 -25.33 16 13 C 0.16 5.46 2.18 44.99 0.10 5.55 16 14 H 0.08 3.16 5.82 -2.39 -0.01 3.15 16 15 C -0.14 -4.03 8.77 71.98 0.63 -3.40 16 16 C -0.11 -4.43 4.70 30.60 0.14 -4.29 16 17 C 0.04 1.89 4.86 29.85 0.15 2.04 16 18 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 19 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 20 C 0.00 0.05 5.46 84.65 0.46 0.51 16 21 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 22 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 C -0.11 -2.63 9.54 22.46 0.21 -2.42 16 27 C -0.06 -1.31 9.58 22.50 0.22 -1.09 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.17 2.16 7.60 -2.91 -0.02 2.14 16 32 H 0.16 3.05 7.54 -2.91 -0.02 3.03 16 33 H 0.39 7.79 9.28 -74.06 -0.69 7.10 16 34 H 0.40 12.28 6.74 -92.71 -0.62 11.65 16 35 H 0.07 1.95 6.13 -2.39 -0.01 1.93 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.00 -0.15 7.75 -2.39 -0.02 -0.17 16 41 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 42 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 43 H 0.14 3.33 6.41 -2.91 -0.02 3.31 16 44 H 0.15 3.26 7.64 -2.91 -0.02 3.24 16 Total: -1.00 -72.79 371.31 4.61 -68.17 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.27 Total: 27.01 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 5.15 Total: -12.33 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -1.75 Total: -96.09 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.54 Total: -33.23 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -72.79 4.61 -68.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.767 kcal (2) G-P(sol) polarization free energy of solvation -72.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds