Wall clock time and date at job start Tue Mar 31 2020 12:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.99251 * 2 1 4 4 C 1.54320 * 109.88225 * 121.09612 * 2 1 3 5 5 H 1.08998 * 110.71890 * 215.76701 * 4 2 1 6 6 N 1.46504 * 110.72240 * 338.86246 * 4 2 1 7 7 C 1.36937 * 119.99814 * 205.00421 * 6 4 2 8 8 H 1.08000 * 120.00241 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99601 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00260 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99814 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47332 * 179.97438 * 11 9 7 13 13 H 1.48507 * 109.47142 * 299.99450 * 11 9 7 14 14 H 1.48497 * 109.47475 * 59.99348 * 11 9 7 15 15 C 1.55156 * 102.94396 * 97.22577 * 4 2 1 16 16 C 1.54910 * 101.57869 * 35.50076 * 15 4 2 17 17 N 1.47015 * 109.88149 * 238.90605 * 2 1 3 18 18 C 1.34777 * 125.64871 * 59.48572 * 17 2 1 19 19 O 1.21282 * 120.00245 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99994 * 179.97438 * 18 17 2 21 21 C 1.53000 * 109.47222 * 174.42206 * 20 18 17 22 22 C 1.52992 * 115.55293 * 292.83740 * 21 20 18 23 23 F 1.39901 * 109.47323 * 68.71802 * 22 21 20 24 24 F 1.39901 * 109.47387 * 188.72265 * 22 21 20 25 25 F 1.39909 * 109.47053 * 308.72042 * 22 21 20 26 26 C 1.53007 * 117.49623 * 147.16156 * 21 20 18 27 27 C 1.53007 * 117.49527 * 78.50430 * 21 20 18 28 28 H 1.09000 * 109.47218 * 298.90115 * 1 2 3 29 29 H 1.08996 * 109.47674 * 58.90247 * 1 2 3 30 30 H 1.09003 * 109.47117 * 178.90574 * 1 2 3 31 31 H 0.96993 * 119.99836 * 24.99586 * 6 4 2 32 32 H 0.97005 * 119.99992 * 180.02562 * 10 9 7 33 33 H 1.09000 * 111.00434 * 153.57535 * 15 4 2 34 34 H 1.08999 * 111.00466 * 277.42940 * 15 4 2 35 35 H 1.09006 * 110.36473 * 204.15545 * 16 15 4 36 36 H 1.08991 * 110.37120 * 81.83433 * 16 15 4 37 37 H 1.09002 * 109.47106 * 294.42546 * 20 18 17 38 38 H 1.08997 * 109.47193 * 54.42592 * 20 18 17 39 39 H 1.08997 * 117.49806 * 0.02562 * 26 21 20 40 40 H 1.08996 * 117.49052 * 145.02496 * 26 21 20 41 41 H 1.08996 * 117.49432 * 214.97895 * 27 21 20 42 42 H 1.08996 * 117.49680 * 359.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9639 -0.2813 1.6201 6 7 1.0293 -0.8027 2.2875 7 6 1.3954 -0.9388 3.6000 8 1 2.4402 -1.0073 3.8649 9 6 0.4236 -0.9896 4.5899 10 7 -0.8496 -0.9066 4.2670 11 14 0.9230 -1.1760 6.3802 12 1 -0.2924 -1.2034 7.2329 13 1 1.6788 -2.4425 6.5541 14 1 1.7798 -0.0299 6.7771 15 6 2.3519 -2.1695 0.6924 16 6 2.8569 -1.8497 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.7742 -0.3852 -2.4656 19 8 1.0762 0.5740 -2.7180 20 6 2.3555 -1.2094 -3.5854 21 6 1.8043 -0.7128 -4.9235 22 6 0.3084 -0.9427 -5.1472 23 9 -0.4240 -0.1263 -4.2787 24 9 -0.0191 -0.6281 -6.4704 25 9 0.0002 -2.2843 -4.8970 26 6 2.7233 -0.8036 -6.1435 27 6 2.4197 0.5579 -5.5131 28 1 -0.3634 0.4967 0.8997 29 1 -0.3634 0.5307 -0.8799 30 1 -0.3633 -1.0275 -0.0196 31 1 0.0910 -0.7413 2.0496 32 1 -1.5287 -0.9418 4.9589 33 1 3.1271 -2.6618 1.2796 34 1 1.4453 -2.7736 0.6603 35 1 2.7088 -2.7080 -1.3923 36 1 3.9091 -1.5667 -0.7129 37 1 3.4413 -1.1133 -3.5815 38 1 2.0829 -2.2555 -3.4460 39 1 3.7203 -1.2175 -5.9929 40 1 2.2619 -1.0268 -7.1054 41 1 1.7587 1.2298 -6.0607 42 1 3.2168 1.0403 -4.9475 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178871017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:55 Heat of formation + Delta-G solvation = -157.801971 kcal Electronic energy + Delta-G solvation = -28518.890779 eV Core-core repulsion = 24084.701027 eV Total energy + Delta-G solvation = -4434.189751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.03709 -48.62754 -48.45134 -41.32123 -39.39715 -38.00692 -35.89386 -33.53686 -32.12603 -31.30675 -29.75301 -27.53031 -26.76497 -25.36868 -23.89602 -23.49052 -21.93853 -20.90187 -19.88758 -19.45357 -19.36800 -19.21604 -18.37166 -17.94173 -17.00540 -16.48240 -16.40783 -15.84817 -15.77994 -15.46937 -15.35492 -15.10868 -14.99731 -14.79022 -14.73797 -14.67413 -14.42874 -14.24997 -13.85733 -13.59608 -13.41334 -13.12956 -12.92861 -12.89369 -12.81573 -12.51886 -12.48853 -12.45582 -12.11327 -12.03983 -11.68423 -11.58715 -11.51380 -11.35859 -10.89702 -10.62043 -9.57782 -9.00702 -7.93063 -5.22341 1.49429 1.52285 1.58209 1.69041 1.80158 1.92184 2.42292 2.58785 2.84935 2.96732 3.37398 3.43201 3.47448 3.54238 3.80396 3.82681 3.87197 3.95810 4.15914 4.23171 4.38805 4.42734 4.49409 4.52436 4.60598 4.68149 4.68400 4.71265 4.85023 4.89398 4.95841 5.07972 5.13917 5.21868 5.28785 5.36298 5.52859 5.55818 6.28211 6.65867 7.24943 7.35268 8.09835 8.32736 9.30502 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.029060 B = 0.003027 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.298069 B = 9247.870201 C = 9595.511191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.136 3.864 3 H 0.063 0.937 4 C 0.165 3.835 5 H 0.071 0.929 6 N -0.733 5.733 7 C -0.240 4.240 8 H 0.083 0.917 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.301 1.301 13 H -0.275 1.275 14 H -0.278 1.278 15 C -0.147 4.147 16 C 0.104 3.896 17 N -0.612 5.612 18 C 0.509 3.491 19 O -0.560 6.560 20 C -0.088 4.088 21 C -0.205 4.205 22 C 0.475 3.525 23 F -0.182 7.182 24 F -0.187 7.187 25 F -0.190 7.190 26 C -0.113 4.113 27 C -0.137 4.137 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.379 0.621 32 H 0.250 0.750 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.151 0.849 38 H 0.116 0.884 39 H 0.147 0.853 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.996 -3.121 -23.028 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.032 3.968 3 H 0.081 0.919 4 C 0.055 3.945 5 H 0.089 0.911 6 N -0.375 5.375 7 C -0.372 4.372 8 H 0.101 0.899 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.228 1.228 13 H -0.201 1.201 14 H -0.204 1.204 15 C -0.188 4.188 16 C -0.017 4.017 17 N -0.346 5.346 18 C 0.299 3.701 19 O -0.438 6.438 20 C -0.127 4.127 21 C -0.206 4.206 22 C 0.421 3.579 23 F -0.163 7.163 24 F -0.168 7.168 25 F -0.171 7.171 26 C -0.150 4.150 27 C -0.174 4.174 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.214 0.786 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.169 0.831 38 H 0.135 0.865 39 H 0.165 0.835 40 H 0.131 0.869 41 H 0.113 0.887 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.666 -2.604 -23.086 26.461 hybrid contribution -1.443 0.057 1.371 1.991 sum 11.223 -2.547 -21.715 24.576 Atomic orbital electron populations 1.21790 0.96381 1.00896 1.00955 1.21536 0.93763 0.95777 0.85764 0.91877 1.21418 0.92013 0.94357 0.86750 0.91110 1.42855 1.05085 1.87329 1.02273 1.19655 0.92925 1.40309 0.84301 0.89925 1.25576 0.95276 1.03823 1.02205 1.69829 0.99938 1.59347 1.33192 0.85200 0.76258 0.78296 0.79913 1.22777 1.20086 1.20402 1.23366 1.01270 0.98503 0.95669 1.22550 0.95450 0.88610 0.95130 1.48644 1.50673 1.30930 1.04368 1.20940 0.80778 0.85558 0.82859 1.90748 1.39162 1.30425 1.83469 1.21221 1.04137 1.00394 0.86950 1.22102 0.87927 1.11359 0.99243 1.19932 0.91261 0.73406 0.73288 1.93286 1.80224 1.72940 1.69857 1.93126 1.94187 1.92796 1.36724 1.93146 1.94632 1.35287 1.94046 1.23476 1.00077 0.98098 0.93318 1.23134 1.02355 0.90446 1.01484 0.92858 0.92818 0.93890 0.78557 0.94146 0.89278 0.93044 0.88183 0.88232 0.83106 0.86543 0.83538 0.86883 0.88667 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 7.93 71.98 0.57 -5.16 16 2 C 0.14 4.79 3.48 45.34 0.16 4.95 16 3 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 4 C 0.16 6.10 3.49 46.18 0.16 6.26 16 5 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 6 N -0.73 -35.94 4.94 -317.33 -1.57 -37.50 16 7 C -0.24 -12.86 9.96 84.03 0.84 -12.02 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 10 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 11 Si 0.97 45.37 29.55 68.60 2.03 47.39 16 12 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 C -0.15 -4.35 6.77 31.99 0.22 -4.13 16 16 C 0.10 2.12 6.69 86.86 0.58 2.70 16 17 N -0.61 -16.73 3.08 -788.06 -2.43 -19.15 16 18 C 0.51 13.64 7.35 87.66 0.64 14.28 16 19 O -0.56 -19.52 12.08 -3.04 -0.04 -19.56 16 20 C -0.09 -1.39 4.56 29.85 0.14 -1.26 16 21 C -0.20 -3.55 1.34 -52.18 -0.07 -3.62 16 22 C 0.48 11.70 3.03 71.98 0.22 11.92 16 23 F -0.18 -6.01 14.25 44.97 0.64 -5.37 16 24 F -0.19 -4.33 15.92 44.97 0.72 -3.61 16 25 F -0.19 -4.76 16.84 44.97 0.76 -4.00 16 26 C -0.11 -1.03 9.63 30.62 0.29 -0.74 16 27 C -0.14 -1.99 9.54 30.62 0.29 -1.69 16 28 H 0.05 2.40 6.76 -2.39 -0.02 2.38 16 29 H 0.05 2.21 6.76 -2.39 -0.02 2.19 16 30 H 0.04 1.78 8.03 -2.39 -0.02 1.76 16 31 H 0.38 20.30 5.06 -92.71 -0.47 19.83 16 32 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 1.47 7.31 -2.38 -0.02 1.45 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.15 1.18 8.08 -2.39 -0.02 1.16 16 38 H 0.12 1.59 7.27 -2.39 -0.02 1.57 16 39 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.11 1.00 7.54 -2.39 -0.02 0.98 16 41 H 0.09 1.58 8.04 -2.39 -0.02 1.56 16 42 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -72.44 348.24 5.48 -66.96 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.58 Total: 26.53 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 4.51 Total: 7.61 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -3.71 Total: -115.94 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.04 Total: -19.56 kcal Atomic # 9 Polarization: -15.10 SS G_CDS: 2.11 Total: -12.99 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.44 5.48 -66.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178871017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.846 kcal (2) G-P(sol) polarization free energy of solvation -72.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds