Wall clock time and date at job start Tue Mar 31 2020 13:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47371 * 2 1 4 4 C 1.53010 * 109.47217 * 240.00948 * 2 1 3 5 5 C 1.50697 * 109.47008 * 64.99627 * 4 2 1 6 6 O 1.21280 * 120.00319 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99891 * 180.02562 * 5 4 2 8 8 C 1.47352 * 125.51947 * 359.97109 * 7 5 4 9 9 C 1.54947 * 104.89842 * 156.72263 * 8 7 5 10 10 C 1.54792 * 101.45812 * 37.25666 * 9 8 7 11 11 H 1.08998 * 112.84859 * 86.23364 * 10 9 8 12 12 C 1.53514 * 109.68693 * 212.92708 * 10 9 8 13 13 N 1.46653 * 107.22312 * 83.98515 * 12 10 9 14 14 C 1.36935 * 125.28841 * 197.47095 * 13 12 10 15 15 H 1.07994 * 119.99994 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99726 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99802 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47334 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47151 * 119.99936 * 18 16 14 21 21 H 1.48502 * 109.47063 * 239.99831 * 18 16 14 22 22 C 1.46949 * 109.16835 * 17.46624 * 13 12 10 23 23 C 1.47249 * 125.52688 * 179.97438 * 7 5 4 24 24 H 1.09007 * 111.94610 * 56.65103 * 23 7 5 25 25 C 1.52997 * 109.47750 * 120.00847 * 2 1 3 26 26 F 1.39895 * 109.47567 * 180.02562 * 25 2 1 27 27 F 1.39904 * 109.46865 * 300.00180 * 25 2 1 28 28 F 1.39898 * 109.47139 * 59.99795 * 25 2 1 29 29 H 1.09008 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47489 * 299.99198 * 1 2 3 31 31 H 1.08998 * 109.47599 * 59.99718 * 1 2 3 32 32 H 1.09008 * 109.46542 * 304.99835 * 4 2 1 33 33 H 1.08997 * 109.47037 * 184.99696 * 4 2 1 34 34 H 1.09000 * 110.35482 * 37.87249 * 8 7 5 35 35 H 1.09001 * 110.44286 * 275.62289 * 8 7 5 36 36 H 1.08995 * 111.03188 * 279.21136 * 9 8 7 37 37 H 1.08998 * 111.03240 * 155.29655 * 9 8 7 38 38 H 1.09002 * 109.91762 * 203.43637 * 12 10 9 39 39 H 1.09002 * 109.91557 * 324.53392 * 12 10 9 40 40 H 0.97003 * 120.00235 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.65076 * 238.24258 * 22 13 12 42 42 H 1.09002 * 109.68179 * 117.71071 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6412 0.0574 -2.4766 6 8 1.0108 1.0872 -2.3632 7 7 1.9843 -0.3914 -3.7003 8 6 2.7455 -1.6221 -3.9784 9 6 2.3688 -2.0035 -5.4322 10 6 2.2710 -0.6105 -6.1001 11 1 3.2319 -0.2477 -6.4650 12 6 1.1908 -0.6346 -7.1907 13 7 -0.0977 -0.3997 -6.5310 14 6 -1.3252 -0.6740 -7.0723 15 1 -1.3959 -1.0978 -8.0631 16 6 -2.4787 -0.4072 -6.3475 17 7 -2.3924 0.1088 -5.1398 18 14 -4.1532 -0.7806 -7.0863 19 1 -3.9783 -1.3513 -8.4461 20 1 -4.8666 -1.7588 -6.2264 21 1 -4.9460 0.4720 -7.1739 22 6 0.1396 0.1753 -5.1996 23 6 1.6594 0.2686 -4.9759 24 1 2.0298 1.2932 -5.0103 25 6 2.0401 -0.7214 1.2491 26 9 3.4390 -0.7209 1.2493 27 9 1.5737 -0.0621 2.3915 28 9 1.5738 -2.0404 1.2489 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6053 -1.7197 -1.2954 33 1 3.1263 -0.7992 -1.2058 34 1 2.4505 -2.4141 -3.2902 35 1 3.8163 -1.4330 -3.9014 36 1 1.4101 -2.5211 -5.4649 37 1 3.1518 -2.6046 -5.8944 38 1 1.3829 0.1515 -7.9209 39 1 1.1835 -1.6063 -7.6846 40 1 -3.1985 0.2956 -4.6335 41 1 -0.3054 -0.4658 -4.4388 42 1 -0.3016 1.1706 -5.1456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189018420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:14 Heat of formation + Delta-G solvation = -162.340321 kcal Electronic energy + Delta-G solvation = -28657.582945 eV Core-core repulsion = 24223.196396 eV Total energy + Delta-G solvation = -4434.386549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.21404 -47.70085 -47.66680 -40.22929 -38.24228 -35.03809 -34.82545 -32.31010 -30.69495 -29.21873 -27.88426 -26.53461 -26.18485 -24.48924 -22.76667 -21.57746 -20.44479 -19.62033 -18.89535 -18.53834 -18.25025 -17.63477 -16.91980 -16.32184 -15.70730 -15.56672 -14.81224 -14.62908 -14.57131 -14.35743 -14.11948 -13.88650 -13.83464 -13.74564 -13.68615 -13.42825 -13.11660 -12.73728 -12.64033 -12.35891 -12.13759 -11.77364 -11.48018 -11.41571 -11.35555 -11.27266 -11.15168 -10.99869 -10.80185 -10.54114 -10.20484 -10.05179 -9.87993 -9.71681 -9.46145 -8.60336 -8.23910 -6.81813 -5.68744 -3.04765 2.60496 2.91423 3.19946 3.40030 3.45251 3.48164 3.73240 3.93237 3.98019 4.49833 4.55341 4.67526 4.76827 4.81644 5.03732 5.14160 5.23597 5.40879 5.43401 5.48120 5.52230 5.56294 5.69696 5.77990 5.80828 5.89677 5.92390 6.03807 6.14991 6.35278 6.41472 6.56399 6.57546 6.60649 6.83189 7.55268 7.61710 7.88042 7.91035 8.28195 8.47907 9.22470 9.83552 10.46878 11.41212 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.003926 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.983174 B = 7129.522812 C = 8289.726962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 H 0.121 0.879 4 C -0.138 4.138 5 C 0.532 3.468 6 O -0.525 6.525 7 N -0.606 5.606 8 C 0.100 3.900 9 C -0.121 4.121 10 C -0.112 4.112 11 H 0.088 0.912 12 C 0.144 3.856 13 N -0.603 5.603 14 C -0.233 4.233 15 H 0.079 0.921 16 C -0.005 4.005 17 N -0.914 5.914 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.180 3.820 23 C 0.115 3.885 24 H 0.080 0.920 25 C 0.453 3.547 26 F -0.187 7.187 27 F -0.183 7.183 28 F -0.182 7.182 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.016 0.984 39 H 0.038 0.962 40 H 0.252 0.748 41 H 0.057 0.943 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.604 -3.925 9.184 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.135 4.135 3 H 0.140 0.860 4 C -0.178 4.178 5 C 0.320 3.680 6 O -0.401 6.401 7 N -0.340 5.340 8 C -0.023 4.023 9 C -0.159 4.159 10 C -0.132 4.132 11 H 0.106 0.894 12 C 0.018 3.982 13 N -0.330 5.330 14 C -0.361 4.361 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.561 5.561 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.054 3.946 23 C 0.012 3.988 24 H 0.098 0.902 25 C 0.399 3.601 26 F -0.168 7.168 27 F -0.164 7.164 28 F -0.164 7.164 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.022 -3.341 9.424 16.418 hybrid contribution -0.709 -0.392 -0.064 0.813 sum 12.312 -3.733 9.360 15.910 Atomic orbital electron populations 1.22026 0.90499 1.03628 1.05557 1.22172 1.00687 1.01443 0.89238 0.86048 1.21680 1.03247 1.00896 0.92021 1.19677 0.79684 0.85640 0.83024 1.90723 1.39161 1.24612 1.85648 1.48556 1.55005 1.24836 1.05576 1.22328 0.95352 0.86781 0.97873 1.22758 1.02868 0.96977 0.93322 1.22971 0.98897 0.95104 0.96178 0.89372 1.21062 0.85814 0.98193 0.93179 1.44245 1.00250 1.74041 1.14443 1.19048 0.81656 1.36138 0.99271 0.90318 1.24829 0.97788 1.01054 0.96556 1.69999 1.26900 1.48501 1.10714 0.86080 0.84302 0.77495 0.78073 1.20510 1.21795 1.21730 1.21326 0.86511 0.99036 0.87686 1.22885 0.99622 0.95421 0.80859 0.90163 1.20716 0.75192 0.77771 0.86433 1.93163 1.30354 1.96453 1.96840 1.93172 1.88477 1.80777 1.53976 1.93169 1.88429 1.37962 1.96833 0.91807 0.91622 0.87618 0.87776 0.88172 0.91057 0.91716 0.89487 0.90488 0.96608 0.94370 0.93739 0.92520 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.69 37.15 0.32 -1.80 16 2 C -0.12 -1.37 2.01 -90.62 -0.18 -1.56 16 3 H 0.12 1.43 7.96 -51.93 -0.41 1.01 16 4 C -0.14 -1.65 3.94 -27.88 -0.11 -1.76 16 5 C 0.53 8.71 7.28 -10.99 -0.08 8.63 16 6 O -0.53 -10.53 14.05 5.56 0.08 -10.45 16 7 N -0.61 -9.78 2.83 -161.78 -0.46 -10.24 16 8 C 0.10 1.22 6.66 -2.55 -0.02 1.20 16 9 C -0.12 -1.64 6.32 -24.76 -0.16 -1.80 16 10 C -0.11 -1.76 3.97 -88.21 -0.35 -2.11 16 11 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 12 C 0.14 2.82 6.49 -3.69 -0.02 2.80 16 13 N -0.60 -15.09 3.39 -171.88 -0.58 -15.68 16 14 C -0.23 -6.43 10.25 -15.06 -0.15 -6.58 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 17 N -0.91 -27.22 10.27 55.49 0.57 -26.65 16 18 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C 0.18 4.40 4.65 -3.33 -0.02 4.39 16 23 C 0.12 2.16 3.81 -65.85 -0.25 1.91 16 24 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 25 C 0.45 5.11 2.69 37.16 0.10 5.21 16 26 F -0.19 -2.07 16.71 2.25 0.04 -2.03 16 27 F -0.18 -2.17 16.80 2.25 0.04 -2.13 16 28 F -0.18 -2.14 16.37 2.25 0.04 -2.11 16 29 H 0.06 0.81 7.80 -51.92 -0.41 0.41 16 30 H 0.06 0.78 7.80 -51.93 -0.41 0.38 16 31 H 0.11 1.75 5.95 -51.93 -0.31 1.44 16 32 H 0.10 1.16 7.65 -51.92 -0.40 0.76 16 33 H 0.10 0.96 7.66 -51.93 -0.40 0.57 16 34 H 0.07 0.77 7.49 -51.93 -0.39 0.38 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.04 0.72 7.96 -51.93 -0.41 0.31 16 40 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.06 1.57 6.90 -51.93 -0.36 1.21 16 42 H 0.04 1.27 7.53 -51.93 -0.39 0.88 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -31.89 343.02 -7.10 -38.99 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.95 Total: -0.27 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.01 Total: 8.28 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.47 Total: -52.57 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.27 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.89 -7.10 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189018420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.352 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds