Wall clock time and date at job start Tue Mar 31 2020 13:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47371 * 2 1 4 4 C 1.53010 * 109.47217 * 240.00948 * 2 1 3 5 5 C 1.50697 * 109.47008 * 64.99627 * 4 2 1 6 6 O 1.21280 * 120.00319 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99891 * 180.02562 * 5 4 2 8 8 C 1.47352 * 125.51947 * 359.97109 * 7 5 4 9 9 C 1.54947 * 104.89842 * 156.72263 * 8 7 5 10 10 C 1.54792 * 101.45812 * 37.25666 * 9 8 7 11 11 H 1.08998 * 112.84859 * 86.23364 * 10 9 8 12 12 C 1.53514 * 109.68693 * 212.92708 * 10 9 8 13 13 N 1.46653 * 107.22312 * 83.98515 * 12 10 9 14 14 C 1.36935 * 125.28841 * 197.47095 * 13 12 10 15 15 H 1.07994 * 119.99994 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99726 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99802 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47334 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47151 * 119.99936 * 18 16 14 21 21 H 1.48502 * 109.47063 * 239.99831 * 18 16 14 22 22 C 1.46949 * 109.16835 * 17.46624 * 13 12 10 23 23 C 1.47249 * 125.52688 * 179.97438 * 7 5 4 24 24 H 1.09007 * 111.94610 * 56.65103 * 23 7 5 25 25 C 1.52997 * 109.47750 * 120.00847 * 2 1 3 26 26 F 1.39895 * 109.47567 * 180.02562 * 25 2 1 27 27 F 1.39904 * 109.46865 * 300.00180 * 25 2 1 28 28 F 1.39898 * 109.47139 * 59.99795 * 25 2 1 29 29 H 1.09008 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47489 * 299.99198 * 1 2 3 31 31 H 1.08998 * 109.47599 * 59.99718 * 1 2 3 32 32 H 1.09008 * 109.46542 * 304.99835 * 4 2 1 33 33 H 1.08997 * 109.47037 * 184.99696 * 4 2 1 34 34 H 1.09000 * 110.35482 * 37.87249 * 8 7 5 35 35 H 1.09001 * 110.44286 * 275.62289 * 8 7 5 36 36 H 1.08995 * 111.03188 * 279.21136 * 9 8 7 37 37 H 1.08998 * 111.03240 * 155.29655 * 9 8 7 38 38 H 1.09002 * 109.91762 * 203.43637 * 12 10 9 39 39 H 1.09002 * 109.91557 * 324.53392 * 12 10 9 40 40 H 0.97003 * 120.00235 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.65076 * 238.24258 * 22 13 12 42 42 H 1.09002 * 109.68179 * 117.71071 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6412 0.0574 -2.4766 6 8 1.0108 1.0872 -2.3632 7 7 1.9843 -0.3914 -3.7003 8 6 2.7455 -1.6221 -3.9784 9 6 2.3688 -2.0035 -5.4322 10 6 2.2710 -0.6105 -6.1001 11 1 3.2319 -0.2477 -6.4650 12 6 1.1908 -0.6346 -7.1907 13 7 -0.0977 -0.3997 -6.5310 14 6 -1.3252 -0.6740 -7.0723 15 1 -1.3959 -1.0978 -8.0631 16 6 -2.4787 -0.4072 -6.3475 17 7 -2.3924 0.1088 -5.1398 18 14 -4.1532 -0.7806 -7.0863 19 1 -3.9783 -1.3513 -8.4461 20 1 -4.8666 -1.7588 -6.2264 21 1 -4.9460 0.4720 -7.1739 22 6 0.1396 0.1753 -5.1996 23 6 1.6594 0.2686 -4.9759 24 1 2.0298 1.2932 -5.0103 25 6 2.0401 -0.7214 1.2491 26 9 3.4390 -0.7209 1.2493 27 9 1.5737 -0.0621 2.3915 28 9 1.5738 -2.0404 1.2489 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6053 -1.7197 -1.2954 33 1 3.1263 -0.7992 -1.2058 34 1 2.4505 -2.4141 -3.2902 35 1 3.8163 -1.4330 -3.9014 36 1 1.4101 -2.5211 -5.4649 37 1 3.1518 -2.6046 -5.8944 38 1 1.3829 0.1515 -7.9209 39 1 1.1835 -1.6063 -7.6846 40 1 -3.1985 0.2956 -4.6335 41 1 -0.3054 -0.4658 -4.4388 42 1 -0.3016 1.1706 -5.1456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189018420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:13 Heat of formation + Delta-G solvation = -182.124945 kcal Electronic energy + Delta-G solvation = -28658.440871 eV Core-core repulsion = 24223.196396 eV Total energy + Delta-G solvation = -4435.244475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.12679 -48.60552 -48.58040 -41.55582 -39.62715 -36.61809 -35.99452 -34.09238 -32.22096 -30.75504 -29.24619 -27.94526 -27.25959 -26.36834 -23.96001 -22.73657 -22.08536 -20.93318 -20.11752 -19.50662 -19.27473 -18.91075 -18.59601 -17.60737 -17.07836 -16.78548 -16.39009 -16.00392 -15.65607 -15.51579 -15.24260 -15.04566 -15.01420 -14.84546 -14.74700 -14.70618 -14.42281 -14.08922 -13.99831 -13.67241 -13.39899 -13.30633 -13.15272 -12.88523 -12.73295 -12.57661 -12.40943 -12.37213 -12.28818 -12.08889 -11.85738 -11.76970 -11.47339 -11.42287 -10.81787 -10.71427 -9.57953 -8.89082 -7.84395 -5.22558 1.42720 1.44235 1.54669 1.58794 1.70239 2.05725 2.47864 2.77108 2.97480 3.05034 3.32507 3.39958 3.62096 3.69503 3.76469 3.81623 3.91808 4.04359 4.18843 4.35354 4.42388 4.46593 4.50139 4.53243 4.61717 4.73350 4.77385 4.88599 4.90393 4.98705 5.13511 5.21272 5.21577 5.29517 5.46103 5.53212 5.61302 5.81487 6.19365 6.63876 7.07558 7.22791 7.78548 8.40139 9.23987 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.003926 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.983174 B = 7129.522812 C = 8289.726962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 H 0.122 0.878 4 C -0.127 4.127 5 C 0.521 3.479 6 O -0.575 6.575 7 N -0.610 5.610 8 C 0.097 3.903 9 C -0.116 4.116 10 C -0.094 4.094 11 H 0.134 0.866 12 C 0.134 3.866 13 N -0.624 5.624 14 C -0.240 4.240 15 H 0.088 0.912 16 C -0.068 4.068 17 N -0.950 5.950 18 Si 0.977 3.023 19 H -0.260 1.260 20 H -0.293 1.293 21 H -0.296 1.296 22 C 0.201 3.799 23 C 0.119 3.881 24 H 0.075 0.925 25 C 0.465 3.535 26 F -0.180 7.180 27 F -0.185 7.185 28 F -0.183 7.183 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.048 0.952 37 H 0.122 0.878 38 H 0.020 0.980 39 H 0.051 0.949 40 H 0.242 0.758 41 H 0.015 0.985 42 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.596 -5.979 8.881 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.133 4.133 3 H 0.140 0.860 4 C -0.166 4.166 5 C 0.311 3.689 6 O -0.454 6.454 7 N -0.343 5.343 8 C -0.024 4.024 9 C -0.154 4.154 10 C -0.113 4.113 11 H 0.152 0.848 12 C 0.009 3.991 13 N -0.351 5.351 14 C -0.369 4.369 15 H 0.106 0.894 16 C -0.261 4.261 17 N -0.599 5.599 18 Si 0.805 3.195 19 H -0.184 1.184 20 H -0.220 1.220 21 H -0.224 1.224 22 C 0.075 3.925 23 C 0.014 3.986 24 H 0.093 0.907 25 C 0.411 3.589 26 F -0.162 7.162 27 F -0.167 7.167 28 F -0.164 7.164 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.154 0.846 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.067 0.933 37 H 0.141 0.859 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.033 0.967 42 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges 16.070 -5.443 9.087 19.247 hybrid contribution -1.649 0.275 -0.030 1.672 sum 14.421 -5.168 9.056 17.796 Atomic orbital electron populations 1.21909 0.92022 1.03324 1.04108 1.22088 0.99410 1.01860 0.89927 0.86000 1.21676 1.05386 1.00248 0.89299 1.20537 0.78701 0.85393 0.84272 1.90711 1.41184 1.27067 1.86480 1.48677 1.55124 1.25991 1.04515 1.22680 0.97088 0.85339 0.97291 1.22758 1.02566 0.95632 0.94395 1.23019 0.99008 0.96022 0.93235 0.84843 1.21346 0.84591 0.98680 0.94445 1.44553 1.01684 1.73786 1.15074 1.19507 0.83068 1.34838 0.99530 0.89406 1.25706 1.01608 1.01722 0.97075 1.70285 1.26971 1.50317 1.12282 0.85032 0.79584 0.76784 0.78091 1.18353 1.22015 1.22373 1.20867 0.90465 0.94433 0.86742 1.22568 0.95420 0.96679 0.83931 0.90725 1.20392 0.75321 0.77465 0.85752 1.93178 1.29777 1.96414 1.96782 1.93172 1.88575 1.80879 1.54063 1.93175 1.88490 1.37956 1.96802 0.91517 0.90615 0.91483 0.86544 0.84634 0.89189 0.87389 0.93291 0.85944 0.96236 0.93077 0.94850 0.96714 1.00003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 8.69 71.98 0.63 -3.66 16 2 C -0.11 -2.58 2.01 -10.79 -0.02 -2.60 16 3 H 0.12 2.81 7.96 -2.39 -0.02 2.79 16 4 C -0.13 -2.77 3.94 29.85 0.12 -2.65 16 5 C 0.52 17.07 7.28 87.66 0.64 17.71 16 6 O -0.57 -24.44 14.05 -3.03 -0.04 -24.48 16 7 N -0.61 -19.01 2.83 -784.15 -2.22 -21.23 16 8 C 0.10 1.97 6.66 86.88 0.58 2.55 16 9 C -0.12 -2.70 6.32 31.87 0.20 -2.49 16 10 C -0.09 -2.67 3.97 -9.23 -0.04 -2.71 16 11 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 12 C 0.13 5.10 6.49 86.52 0.56 5.66 16 13 N -0.62 -32.20 3.39 -697.71 -2.36 -34.57 16 14 C -0.24 -13.61 10.25 84.04 0.86 -12.75 16 15 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 16 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 17 N -0.95 -60.33 10.27 21.65 0.22 -60.10 16 18 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 20 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 22 C 0.20 10.46 4.65 86.60 0.40 10.86 16 23 C 0.12 4.45 3.81 45.93 0.18 4.63 16 24 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 25 C 0.46 9.53 2.69 71.98 0.19 9.72 16 26 F -0.18 -3.45 16.71 44.97 0.75 -2.70 16 27 F -0.19 -4.11 16.80 44.97 0.76 -3.35 16 28 F -0.18 -3.88 16.37 44.97 0.74 -3.14 16 29 H 0.07 1.73 7.80 -2.38 -0.02 1.71 16 30 H 0.07 1.85 7.80 -2.39 -0.02 1.83 16 31 H 0.07 2.41 5.95 -2.39 -0.01 2.40 16 32 H 0.12 2.31 7.65 -2.38 -0.02 2.29 16 33 H 0.14 2.03 7.66 -2.39 -0.02 2.01 16 34 H 0.09 1.53 7.49 -2.39 -0.02 1.52 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.54 7.93 -2.39 -0.02 1.52 16 37 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 1.82 7.96 -2.39 -0.02 1.80 16 40 H 0.24 15.13 8.31 -92.71 -0.77 14.35 16 41 H 0.01 0.87 6.90 -2.39 -0.02 0.86 16 42 H -0.02 -1.15 7.53 -2.39 -0.02 -1.17 16 Total: -1.00 -77.38 343.02 5.66 -71.72 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.03 Total: 8.16 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 4.76 Total: 20.73 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.36 Total: -115.90 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.04 Total: -24.48 kcal Atomic # 9 Polarization: -11.43 SS G_CDS: 2.24 Total: -9.19 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -77.38 5.66 -71.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189018420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.408 kcal (2) G-P(sol) polarization free energy of solvation -77.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds