Wall clock time and date at job start Tue Mar 31 2020 13:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46777 * 2 1 4 4 C 1.52997 * 109.46776 * 240.00605 * 2 1 3 5 5 C 1.52997 * 109.47719 * 67.05665 * 4 2 1 6 6 F 1.39901 * 109.47026 * 54.35570 * 5 4 2 7 7 F 1.39902 * 109.47458 * 174.35864 * 5 4 2 8 8 F 1.39900 * 109.46775 * 294.35827 * 5 4 2 9 9 C 1.50697 * 109.47012 * 120.00423 * 2 1 3 10 10 O 1.21282 * 120.00012 * 87.48952 * 9 2 1 11 11 N 1.34781 * 119.99906 * 267.47840 * 9 2 1 12 12 C 1.47806 * 135.01384 * 5.67648 * 11 9 2 13 13 C 1.54644 * 85.79143 * 153.78059 * 12 11 9 14 14 H 1.08999 * 114.43977 * 140.42327 * 13 12 11 15 15 C 1.53010 * 110.83848 * 270.22818 * 13 12 11 16 16 C 1.53103 * 109.44852 * 143.89086 * 15 13 12 17 17 N 1.46616 * 108.00691 * 301.02570 * 16 15 13 18 18 C 1.36935 * 119.89246 * 237.30082 * 17 16 15 19 19 H 1.07997 * 119.99821 * 28.65399 * 18 17 16 20 20 C 1.38805 * 120.00409 * 208.92178 * 18 17 16 21 21 N 1.31621 * 120.00146 * 11.71584 * 20 18 17 22 22 Si 1.86806 * 120.00481 * 191.71958 * 20 18 17 23 23 H 1.48504 * 109.46522 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47094 * 119.99817 * 22 20 18 25 25 H 1.48496 * 109.46899 * 240.00303 * 22 20 18 26 26 C 1.45687 * 120.21946 * 57.58574 * 17 16 15 27 27 C 1.46814 * 135.01214 * 185.63869 * 11 9 2 28 28 H 1.09003 * 111.55879 * 94.50555 * 27 11 9 29 29 H 1.08997 * 109.47246 * 289.76025 * 1 2 3 30 30 H 1.09004 * 109.47283 * 49.76005 * 1 2 3 31 31 H 1.09006 * 109.46915 * 169.76202 * 1 2 3 32 32 H 1.09008 * 109.46758 * 187.05320 * 4 2 1 33 33 H 1.08998 * 109.47231 * 307.04581 * 4 2 1 34 34 H 1.09008 * 113.82002 * 39.56115 * 12 11 9 35 35 H 1.08996 * 113.92791 * 268.01707 * 12 11 9 36 36 H 1.09004 * 109.47699 * 23.90015 * 15 13 12 37 37 H 1.08999 * 109.48021 * 263.88225 * 15 13 12 38 38 H 1.08999 * 109.75641 * 181.39988 * 16 15 13 39 39 H 1.08996 * 109.79473 * 60.67830 * 16 15 13 40 40 H 0.96994 * 120.00364 * 179.97438 * 21 20 18 41 41 H 1.08997 * 108.71786 * 81.48017 * 26 17 16 42 42 H 1.09001 * 108.71338 * 199.50929 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6798 0.0952 -2.4922 6 9 2.1650 1.3996 -2.3501 7 9 2.2559 -0.4962 -3.6217 8 9 0.2892 0.1285 -2.6413 9 6 2.0323 -0.7105 1.2304 10 8 2.1911 -1.9128 1.2141 11 7 2.3053 -0.0098 2.3489 12 6 2.1412 1.3985 2.7664 13 6 2.0834 0.8449 4.2092 14 1 2.6069 1.4531 4.9469 15 6 0.6441 0.5113 4.6070 16 6 0.6359 -0.7399 5.4893 17 7 1.2392 -1.8367 4.7259 18 6 0.5307 -2.9885 4.5104 19 1 -0.5479 -2.9586 4.4648 20 6 1.1985 -4.1956 4.3560 21 7 2.4805 -4.2798 4.6424 22 14 0.2781 -5.7005 3.7417 23 1 -1.1422 -5.3448 3.4935 24 1 0.8972 -6.1783 2.4794 25 1 0.3473 -6.7748 4.7647 26 6 2.5921 -1.7076 4.2012 27 6 2.8885 -0.3292 3.6579 28 1 3.9595 -0.1274 3.6792 29 1 -0.3633 0.3474 0.9671 30 1 -0.3634 0.6639 -0.7845 31 1 -0.3633 -1.0114 -0.1827 32 1 3.1227 -0.8317 -1.1885 33 1 1.5773 -1.7059 -1.3147 34 1 1.2081 1.8513 2.4309 35 1 3.0126 2.0226 2.5689 36 1 0.0525 0.3274 3.7101 37 1 0.2163 1.3481 5.1592 38 1 -0.3895 -0.9965 5.7553 39 1 1.2164 -0.5576 6.3937 40 1 2.9471 -5.1233 4.5349 41 1 3.2997 -1.9325 4.9991 42 1 2.7279 -2.4355 3.4013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221706526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:01 Heat of formation + Delta-G solvation = -132.988489 kcal Electronic energy + Delta-G solvation = -29115.140359 eV Core-core repulsion = 24682.026601 eV Total energy + Delta-G solvation = -4433.113758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.25155 -47.73411 -47.71239 -40.50153 -38.17642 -35.18583 -34.70606 -32.14053 -30.19115 -29.65574 -28.51328 -26.94176 -24.75554 -23.88123 -23.26741 -21.97882 -21.03230 -19.54064 -18.71646 -18.61603 -17.74946 -17.52785 -16.68744 -15.90082 -15.64089 -15.45797 -14.90811 -14.60258 -14.50021 -14.25265 -14.16021 -13.94798 -13.83841 -13.73354 -13.52420 -13.27039 -13.20073 -12.82691 -12.63606 -12.34020 -12.12627 -11.94473 -11.65977 -11.45520 -11.40624 -11.27106 -11.06829 -10.69659 -10.67059 -10.47271 -10.17579 -9.89116 -9.84471 -9.62633 -8.90901 -8.32313 -8.14165 -6.55174 -5.66253 -3.11968 2.59889 3.07107 3.18236 3.46209 3.53395 3.54629 3.72857 3.91147 3.96021 4.55988 4.59036 4.67555 4.72949 4.82371 5.12677 5.18656 5.38900 5.43392 5.46933 5.52417 5.56688 5.60321 5.67035 5.73739 5.81613 5.89127 6.11640 6.14477 6.19129 6.29244 6.37770 6.50805 6.58493 6.78324 6.99341 7.48946 7.76618 7.93198 8.25188 8.58405 8.67756 9.35708 9.98591 10.48481 11.41859 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.004818 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.753698 B = 5809.819077 C = 7046.005266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.150 4.150 5 C 0.455 3.545 6 F -0.185 7.185 7 F -0.185 7.185 8 F -0.180 7.180 9 C 0.541 3.459 10 O -0.512 6.512 11 N -0.629 5.629 12 C 0.093 3.907 13 C -0.109 4.109 14 H 0.086 0.914 15 C -0.117 4.117 16 C 0.147 3.853 17 N -0.584 5.584 18 C -0.251 4.251 19 H 0.061 0.939 20 C 0.013 3.987 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.292 1.292 26 C 0.168 3.832 27 C 0.124 3.876 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.251 0.749 41 H 0.032 0.968 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 14.946 -9.264 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 H 0.113 0.887 4 C -0.189 4.189 5 C 0.401 3.599 6 F -0.167 7.167 7 F -0.166 7.166 8 F -0.161 7.161 9 C 0.329 3.671 10 O -0.387 6.387 11 N -0.365 5.365 12 C -0.030 4.030 13 C -0.128 4.128 14 H 0.104 0.896 15 C -0.156 4.156 16 C 0.020 3.980 17 N -0.306 5.306 18 C -0.381 4.381 19 H 0.079 0.921 20 C -0.186 4.186 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.219 1.219 26 C 0.041 3.959 27 C 0.020 3.980 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.080 14.014 -9.510 16.936 hybrid contribution -0.308 -0.508 -0.682 0.904 sum -0.388 13.506 -10.192 16.924 Atomic orbital electron populations 1.21957 0.91719 1.03845 1.03200 1.21191 0.98858 1.00440 0.92385 0.88674 1.22757 1.05942 1.00744 0.89439 1.20591 0.74543 0.78770 0.86027 1.93165 1.87917 1.39774 1.95836 1.93187 1.84569 1.83740 1.55127 1.93162 1.30343 1.96444 1.96201 1.19599 0.78247 0.87057 0.82243 1.90809 1.51841 1.13409 1.82614 1.49807 1.62590 1.10292 1.13803 1.23590 1.00929 0.84597 0.93904 1.22848 0.98343 0.96743 0.94894 0.89560 1.21861 0.93526 0.99257 1.00983 1.20754 0.97304 0.87757 0.92177 1.43444 1.14056 1.13838 1.59272 1.19084 0.90289 0.84488 1.44219 0.92124 1.25019 0.96102 0.97362 1.00129 1.69989 1.08622 1.24994 1.51257 0.86245 0.79166 0.83175 0.78266 1.20458 1.21529 1.21869 1.20170 0.86506 0.90584 0.98609 1.22766 0.96020 0.99543 0.79655 0.90984 0.91515 0.90948 0.91136 0.87009 0.85919 0.90648 0.90435 0.92131 0.92749 0.92582 0.96243 0.93844 0.95024 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.35 37.16 0.31 -1.59 16 2 C -0.11 -1.41 2.48 -91.77 -0.23 -1.64 16 3 H 0.10 1.07 7.19 -51.93 -0.37 0.69 16 4 C -0.15 -1.82 4.34 -26.73 -0.12 -1.94 16 5 C 0.45 5.12 3.14 37.16 0.12 5.23 16 6 F -0.19 -2.07 16.45 2.25 0.04 -2.04 16 7 F -0.18 -2.18 17.32 2.25 0.04 -2.14 16 8 F -0.18 -2.09 14.47 2.25 0.03 -2.05 16 9 C 0.54 9.79 7.01 -10.98 -0.08 9.71 16 10 O -0.51 -11.91 15.42 5.56 0.09 -11.82 16 11 N -0.63 -10.62 3.35 -173.86 -0.58 -11.21 16 12 C 0.09 1.14 7.77 -3.01 -0.02 1.12 16 13 C -0.11 -1.58 4.39 -89.98 -0.40 -1.98 16 14 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 15 C -0.12 -1.86 5.66 -26.67 -0.15 -2.02 16 16 C 0.15 2.97 6.47 -3.93 -0.03 2.94 16 17 N -0.58 -14.64 3.01 -174.88 -0.53 -15.17 16 18 C -0.25 -7.10 9.50 -15.06 -0.14 -7.24 16 19 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 20 C 0.01 0.37 5.00 -17.43 -0.09 0.28 16 21 N -0.90 -27.21 11.01 55.49 0.61 -26.60 16 22 Si 0.90 23.08 29.57 -169.99 -5.03 18.06 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 C 0.17 4.07 4.59 -5.44 -0.02 4.05 16 27 C 0.12 2.27 4.24 -69.44 -0.29 1.98 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.07 0.78 6.20 -51.93 -0.32 0.46 16 31 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 32 H 0.11 1.29 8.13 -51.92 -0.42 0.87 16 33 H 0.12 1.58 8.01 -51.93 -0.42 1.16 16 34 H 0.08 0.82 7.97 -51.92 -0.41 0.40 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.13 7.90 -51.93 -0.41 0.72 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.03 0.84 7.92 -51.93 -0.41 0.43 16 42 H 0.10 2.89 5.03 -51.93 -0.26 2.63 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -33.02 343.94 -7.21 -40.24 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.93 Total: -1.36 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -1.14 Total: 8.91 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.50 Total: -52.97 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.11 Total: -6.23 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.03 Total: 18.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.02 -7.21 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221706526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.750 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds