Wall clock time and date at job start Tue Mar 31 2020 13:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46777 * 2 1 4 4 C 1.52997 * 109.46776 * 240.00605 * 2 1 3 5 5 C 1.52997 * 109.47719 * 67.05665 * 4 2 1 6 6 F 1.39901 * 109.47026 * 54.35570 * 5 4 2 7 7 F 1.39902 * 109.47458 * 174.35864 * 5 4 2 8 8 F 1.39900 * 109.46775 * 294.35827 * 5 4 2 9 9 C 1.50697 * 109.47012 * 120.00423 * 2 1 3 10 10 O 1.21282 * 120.00012 * 87.48952 * 9 2 1 11 11 N 1.34781 * 119.99906 * 267.47840 * 9 2 1 12 12 C 1.47806 * 135.01384 * 5.67648 * 11 9 2 13 13 C 1.54644 * 85.79143 * 153.78059 * 12 11 9 14 14 H 1.08999 * 114.43977 * 140.42327 * 13 12 11 15 15 C 1.53010 * 110.83848 * 270.22818 * 13 12 11 16 16 C 1.53103 * 109.44852 * 143.89086 * 15 13 12 17 17 N 1.46616 * 108.00691 * 301.02570 * 16 15 13 18 18 C 1.36935 * 119.89246 * 237.30082 * 17 16 15 19 19 H 1.07997 * 119.99821 * 28.65399 * 18 17 16 20 20 C 1.38805 * 120.00409 * 208.92178 * 18 17 16 21 21 N 1.31621 * 120.00146 * 11.71584 * 20 18 17 22 22 Si 1.86806 * 120.00481 * 191.71958 * 20 18 17 23 23 H 1.48504 * 109.46522 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47094 * 119.99817 * 22 20 18 25 25 H 1.48496 * 109.46899 * 240.00303 * 22 20 18 26 26 C 1.45687 * 120.21946 * 57.58574 * 17 16 15 27 27 C 1.46814 * 135.01214 * 185.63869 * 11 9 2 28 28 H 1.09003 * 111.55879 * 94.50555 * 27 11 9 29 29 H 1.08997 * 109.47246 * 289.76025 * 1 2 3 30 30 H 1.09004 * 109.47283 * 49.76005 * 1 2 3 31 31 H 1.09006 * 109.46915 * 169.76202 * 1 2 3 32 32 H 1.09008 * 109.46758 * 187.05320 * 4 2 1 33 33 H 1.08998 * 109.47231 * 307.04581 * 4 2 1 34 34 H 1.09008 * 113.82002 * 39.56115 * 12 11 9 35 35 H 1.08996 * 113.92791 * 268.01707 * 12 11 9 36 36 H 1.09004 * 109.47699 * 23.90015 * 15 13 12 37 37 H 1.08999 * 109.48021 * 263.88225 * 15 13 12 38 38 H 1.08999 * 109.75641 * 181.39988 * 16 15 13 39 39 H 1.08996 * 109.79473 * 60.67830 * 16 15 13 40 40 H 0.96994 * 120.00364 * 179.97438 * 21 20 18 41 41 H 1.08997 * 108.71786 * 81.48017 * 26 17 16 42 42 H 1.09001 * 108.71338 * 199.50929 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6798 0.0952 -2.4922 6 9 2.1650 1.3996 -2.3501 7 9 2.2559 -0.4962 -3.6217 8 9 0.2892 0.1285 -2.6413 9 6 2.0323 -0.7105 1.2304 10 8 2.1911 -1.9128 1.2141 11 7 2.3053 -0.0098 2.3489 12 6 2.1412 1.3985 2.7664 13 6 2.0834 0.8449 4.2092 14 1 2.6069 1.4531 4.9469 15 6 0.6441 0.5113 4.6070 16 6 0.6359 -0.7399 5.4893 17 7 1.2392 -1.8367 4.7259 18 6 0.5307 -2.9885 4.5104 19 1 -0.5479 -2.9586 4.4648 20 6 1.1985 -4.1956 4.3560 21 7 2.4805 -4.2798 4.6424 22 14 0.2781 -5.7005 3.7417 23 1 -1.1422 -5.3448 3.4935 24 1 0.8972 -6.1783 2.4794 25 1 0.3473 -6.7748 4.7647 26 6 2.5921 -1.7076 4.2012 27 6 2.8885 -0.3292 3.6579 28 1 3.9595 -0.1274 3.6792 29 1 -0.3633 0.3474 0.9671 30 1 -0.3634 0.6639 -0.7845 31 1 -0.3633 -1.0114 -0.1827 32 1 3.1227 -0.8317 -1.1885 33 1 1.5773 -1.7059 -1.3147 34 1 1.2081 1.8513 2.4309 35 1 3.0126 2.0226 2.5689 36 1 0.0525 0.3274 3.7101 37 1 0.2163 1.3481 5.1592 38 1 -0.3895 -0.9965 5.7553 39 1 1.2164 -0.5576 6.3937 40 1 2.9471 -5.1233 4.5349 41 1 3.2997 -1.9325 4.9991 42 1 2.7279 -2.4355 3.4013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221706526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:00 Heat of formation + Delta-G solvation = -154.089768 kcal Electronic energy + Delta-G solvation = -29116.055379 eV Core-core repulsion = 24682.026601 eV Total energy + Delta-G solvation = -4434.028778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.16243 -48.65555 -48.60518 -41.83083 -39.55978 -36.99254 -35.89008 -33.95466 -31.93624 -30.94545 -29.76648 -28.54993 -25.85556 -25.66138 -24.60755 -23.17361 -22.57645 -20.80451 -19.73552 -19.57730 -19.33795 -18.67622 -18.04360 -17.38673 -17.21255 -16.79277 -16.19845 -15.92495 -15.69569 -15.51545 -15.33137 -15.09974 -15.00538 -14.86136 -14.79635 -14.69518 -14.52410 -14.27804 -13.90661 -13.83793 -13.53675 -13.16992 -13.03435 -12.77890 -12.73652 -12.66049 -12.45032 -12.38655 -12.23043 -12.18495 -11.95165 -11.72283 -11.46356 -11.15269 -10.64825 -10.25931 -9.48241 -8.61871 -7.84397 -5.31999 1.35912 1.40841 1.47682 1.59200 1.76008 2.01089 2.48147 2.76976 2.94636 3.04181 3.31466 3.45433 3.51013 3.69616 3.75036 3.82375 4.01037 4.12386 4.26449 4.42228 4.47336 4.55422 4.57083 4.62330 4.71059 4.74880 4.78475 4.80390 4.92050 4.97849 5.09322 5.16440 5.17983 5.34778 5.45387 5.58549 5.72685 5.83601 6.41999 6.96000 7.20996 7.32554 7.96880 8.37340 9.19692 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.004818 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.753698 B = 5809.819077 C = 7046.005266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.127 0.873 4 C -0.150 4.150 5 C 0.467 3.533 6 F -0.179 7.179 7 F -0.187 7.187 8 F -0.180 7.180 9 C 0.530 3.470 10 O -0.580 6.580 11 N -0.635 5.635 12 C 0.109 3.891 13 C -0.101 4.101 14 H 0.124 0.876 15 C -0.105 4.105 16 C 0.137 3.863 17 N -0.601 5.601 18 C -0.253 4.253 19 H 0.058 0.942 20 C -0.044 4.044 21 N -0.934 5.934 22 Si 0.955 3.045 23 H -0.267 1.267 24 H -0.301 1.301 25 H -0.285 1.285 26 C 0.181 3.819 27 C 0.109 3.891 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.025 0.975 40 H 0.244 0.756 41 H -0.007 1.007 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 18.839 -9.874 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.145 0.855 4 C -0.188 4.188 5 C 0.413 3.587 6 F -0.161 7.161 7 F -0.169 7.169 8 F -0.162 7.162 9 C 0.320 3.680 10 O -0.460 6.460 11 N -0.370 5.370 12 C -0.012 4.012 13 C -0.120 4.120 14 H 0.142 0.858 15 C -0.144 4.144 16 C 0.012 3.988 17 N -0.324 5.324 18 C -0.383 4.383 19 H 0.075 0.925 20 C -0.239 4.239 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.191 1.191 24 H -0.229 1.229 25 H -0.212 1.212 26 C 0.055 3.945 27 C 0.005 3.995 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.011 0.989 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.911 17.994 -10.097 20.654 hybrid contribution -0.069 -1.693 -0.412 1.744 sum -0.980 16.301 -10.509 19.420 Atomic orbital electron populations 1.21943 0.91223 1.03164 1.03937 1.21151 0.99005 1.01274 0.90089 0.85518 1.22688 1.06119 1.00295 0.89724 1.20258 0.74413 0.78662 0.85351 1.93177 1.87849 1.39270 1.95779 1.93187 1.84634 1.83878 1.55167 1.93162 1.30396 1.96445 1.96158 1.20482 0.77312 0.86585 0.83663 1.90786 1.54712 1.16550 1.83910 1.50010 1.61568 1.12696 1.12734 1.23842 1.04035 0.82246 0.91050 1.22862 0.96684 0.94913 0.97556 0.85850 1.21734 0.94866 0.98076 0.99756 1.20997 0.96532 0.88300 0.92932 1.43687 1.14119 1.14251 1.60361 1.19359 0.90463 0.85864 1.42660 0.92457 1.25704 0.96890 0.99979 1.01343 1.70158 1.09883 1.24932 1.53077 0.85385 0.78591 0.80488 0.77128 1.19119 1.22896 1.21180 1.19763 0.85439 0.93452 0.95855 1.22684 0.97982 0.97293 0.81559 0.89267 0.91672 0.88509 0.93260 0.86639 0.87356 0.88080 0.86431 0.93644 0.88350 0.93165 0.95728 0.94680 0.98893 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.35 71.98 0.60 -2.80 16 2 C -0.09 -2.29 2.48 -11.54 -0.03 -2.32 16 3 H 0.13 2.29 7.19 -2.39 -0.02 2.27 16 4 C -0.15 -3.50 4.34 30.59 0.13 -3.36 16 5 C 0.47 9.54 3.14 71.98 0.23 9.77 16 6 F -0.18 -3.42 16.45 44.97 0.74 -2.68 16 7 F -0.19 -4.13 17.32 44.97 0.78 -3.35 16 8 F -0.18 -3.77 14.47 44.97 0.65 -3.12 16 9 C 0.53 19.00 7.01 87.66 0.61 19.61 16 10 O -0.58 -28.35 15.42 -3.03 -0.05 -28.40 16 11 N -0.64 -20.22 3.35 -822.35 -2.75 -22.97 16 12 C 0.11 2.08 7.77 86.33 0.67 2.75 16 13 C -0.10 -2.50 4.39 -10.32 -0.05 -2.55 16 14 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 15 C -0.11 -2.99 5.66 30.63 0.17 -2.81 16 16 C 0.14 5.44 6.47 86.39 0.56 5.99 16 17 N -0.60 -30.93 3.01 -707.21 -2.13 -33.05 16 18 C -0.25 -14.79 9.50 84.03 0.80 -13.99 16 19 H 0.06 3.31 7.85 -2.91 -0.02 3.29 16 20 C -0.04 -2.66 5.00 84.86 0.42 -2.23 16 21 N -0.93 -59.52 11.01 21.65 0.24 -59.28 16 22 Si 0.95 49.43 29.57 68.60 2.03 51.46 16 23 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.30 -16.09 7.11 99.48 0.71 -15.39 16 25 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 26 C 0.18 9.19 4.59 85.91 0.39 9.59 16 27 C 0.11 3.89 4.24 43.84 0.19 4.07 16 28 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.06 1.54 8.10 -2.39 -0.02 1.53 16 30 H 0.10 1.79 6.20 -2.39 -0.01 1.78 16 31 H 0.05 1.36 8.06 -2.38 -0.02 1.34 16 32 H 0.12 2.61 8.13 -2.38 -0.02 2.59 16 33 H 0.11 2.87 8.01 -2.39 -0.02 2.85 16 34 H 0.10 1.51 7.97 -2.38 -0.02 1.50 16 35 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.44 7.69 -2.38 -0.02 1.42 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 2.00 7.90 -2.39 -0.02 1.98 16 39 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16 41 H -0.01 -0.38 7.92 -2.39 -0.02 -0.40 16 42 H 0.05 3.05 5.03 -2.39 -0.01 3.04 16 Total: -1.00 -79.24 343.94 5.25 -73.99 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.03 Total: 5.69 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 4.71 Total: 21.71 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -4.64 Total: -115.30 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.05 Total: -28.40 kcal Atomic # 9 Polarization: -11.32 SS G_CDS: 2.17 Total: -9.15 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.03 Total: 51.46 kcal Total: -79.24 5.25 -73.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221706526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.101 kcal (2) G-P(sol) polarization free energy of solvation -79.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds