Wall clock time and date at job start Tue Mar 31 2020 12:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.55336 * 2 1 4 4 C 1.53002 * 117.49883 * 145.70280 * 2 1 3 5 5 C 1.52999 * 117.49874 * 214.32502 * 2 1 3 6 6 H 1.08995 * 117.50075 * 0.02562 * 5 2 1 7 7 C 1.50704 * 117.49872 * 145.02181 * 5 2 1 8 8 C 1.34515 * 125.79099 * 239.99829 * 7 5 2 9 9 C 1.41385 * 106.83992 * 179.97438 * 8 7 5 10 10 C 1.34512 * 106.83926 * 0.23220 * 9 8 7 11 11 C 1.50702 * 125.78762 * 179.76997 * 10 9 8 12 12 N 1.46502 * 109.47150 * 90.02179 * 11 10 9 13 13 C 1.34778 * 120.00069 * 180.02562 * 12 11 10 14 14 O 1.21354 * 119.99793 * 359.97438 * 13 12 11 15 15 C 1.49448 * 120.00046 * 180.02562 * 13 12 11 16 16 O 1.21347 * 119.99853 * 359.97438 * 15 13 12 17 17 N 1.34778 * 120.00046 * 179.97438 * 15 13 12 18 18 C 1.46502 * 120.00069 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.46921 * 179.97438 * 18 17 15 20 20 C 1.50708 * 109.46792 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99838 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99761 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99840 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00007 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.47739 * 89.99926 * 24 22 20 26 26 H 1.48508 * 109.46963 * 210.00095 * 24 22 20 27 27 H 1.48505 * 109.47198 * 329.99287 * 24 22 20 28 28 O 1.34305 * 108.42433 * 359.63135 * 10 9 8 29 29 H 1.08999 * 109.46929 * 205.67385 * 1 2 3 30 30 H 1.08994 * 109.47239 * 325.67592 * 1 2 3 31 31 H 1.09001 * 109.47067 * 85.67305 * 1 2 3 32 32 H 1.08998 * 117.49742 * 0.02562 * 4 2 1 33 33 H 1.08995 * 117.50199 * 214.97752 * 4 2 1 34 34 H 1.08002 * 126.57938 * 359.94618 * 8 7 5 35 35 H 1.08002 * 126.57514 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.47283 * 210.02243 * 11 10 9 37 37 H 1.09005 * 109.47007 * 330.02445 * 11 10 9 38 38 H 0.97003 * 119.99826 * 359.97438 * 12 11 10 39 39 H 0.96997 * 119.99680 * 359.97438 * 17 15 13 40 40 H 1.08999 * 109.47080 * 300.00018 * 18 17 15 41 41 H 1.09005 * 109.46948 * 60.00059 * 18 17 15 42 42 H 1.08999 * 109.47568 * 300.00098 * 19 18 17 43 43 H 1.09005 * 109.46952 * 60.00440 * 19 18 17 44 44 H 0.97000 * 119.99531 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1212 0.7647 5 6 2.2365 -1.1208 -0.7653 6 1 1.6113 -1.8579 -1.2691 7 6 3.5293 -0.7807 -1.4610 8 6 3.7641 -0.8879 -2.7812 9 6 5.0962 -0.4658 -2.9959 10 6 5.5975 -0.1309 -1.7934 11 6 6.9930 0.3731 -1.5297 12 7 7.0103 1.8349 -1.6241 13 6 8.1599 2.5096 -1.4247 14 8 9.1807 1.9061 -1.1666 15 6 8.1774 4.0009 -1.5205 16 8 7.1567 4.6043 -1.7781 17 7 9.3269 4.6755 -1.3206 18 6 9.3442 6.1374 -1.4150 19 6 10.7609 6.6491 -1.1466 20 6 10.7788 8.1529 -1.2444 21 1 9.8704 8.6899 -1.4744 22 6 11.9548 8.8430 -1.0400 23 7 11.9705 10.1553 -1.1258 24 14 13.5260 7.9140 -0.6428 25 1 14.2336 7.5761 -1.9038 26 1 14.4021 8.7627 0.2043 27 1 13.1914 6.6648 0.0872 28 8 4.6424 -0.3189 -0.8681 29 1 -0.3633 -0.9262 0.4452 30 1 -0.3633 0.8487 0.5794 31 1 -0.3633 0.0775 -1.0247 32 1 1.6112 -1.8590 1.2675 33 1 3.1715 -0.8756 1.2681 34 1 3.0685 -1.2309 -3.5328 35 1 5.6135 -0.4246 -3.9431 36 1 7.3062 0.0698 -0.5306 37 1 7.6765 -0.0468 -2.2678 38 1 6.1945 2.3173 -1.8307 39 1 10.1428 4.1932 -1.1143 40 1 9.0311 6.4407 -2.4141 41 1 8.6607 6.5573 -0.6769 42 1 11.0736 6.3458 -0.1475 43 1 11.4447 6.2292 -1.8845 44 1 12.7979 10.6407 -0.9824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321492148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:59 Heat of formation + Delta-G solvation = -39.717757 kcal Electronic energy + Delta-G solvation = -25108.746199 eV Core-core repulsion = 21221.533704 eV Total energy + Delta-G solvation = -3887.212495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.07123 -40.50872 -38.47114 -38.20966 -35.77557 -34.92886 -33.39858 -32.81917 -31.12586 -30.30107 -29.10083 -27.00323 -25.53243 -23.45068 -22.53419 -22.19040 -21.24065 -20.91077 -20.47968 -20.23250 -18.63577 -17.26703 -17.12887 -16.80634 -16.26057 -16.08371 -15.65883 -15.24381 -15.00186 -14.76185 -14.43133 -14.18740 -14.07145 -13.67006 -13.58111 -13.53975 -13.21909 -13.00180 -12.79156 -12.62235 -12.37667 -12.35486 -11.97400 -11.67141 -11.51896 -11.25764 -11.10698 -10.59950 -10.45329 -10.33506 -10.24932 -9.96863 -9.56104 -9.53939 -9.34336 -8.79541 -8.66433 -8.61973 -6.12924 -4.13706 1.08535 1.48179 2.04282 2.30078 2.64653 3.26173 3.30468 3.31600 3.34234 3.36006 3.80532 3.86526 4.16061 4.30163 4.32845 4.37217 4.60886 4.64532 4.68948 4.80062 4.96512 5.08838 5.12601 5.20161 5.25918 5.27074 5.37138 5.52565 5.55178 5.60284 5.65525 5.77468 5.87753 5.95403 6.08919 6.09187 6.45622 6.49027 6.74935 6.86628 7.06434 7.17501 7.49488 7.61643 7.78366 8.17678 8.41081 8.90290 9.46968 10.99793 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023364 B = 0.001898 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.137452 B =14746.591009 C =15362.030336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.138 4.138 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.085 4.085 6 H 0.135 0.865 7 C 0.033 3.967 8 C -0.208 4.208 9 C -0.174 4.174 10 C -0.041 4.041 11 C 0.204 3.796 12 N -0.704 5.704 13 C 0.511 3.489 14 O -0.519 6.519 15 C 0.500 3.500 16 O -0.527 6.527 17 N -0.690 5.690 18 C 0.127 3.873 19 C -0.024 4.024 20 C -0.524 4.524 21 H 0.077 0.923 22 C 0.070 3.930 23 N -0.897 5.897 24 Si 0.881 3.119 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.265 1.265 28 O -0.167 6.167 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.416 0.584 39 H 0.409 0.591 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.025 0.975 43 H 0.021 0.979 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.205 -27.327 -0.208 33.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.156 4.156 3 H 0.127 0.873 4 C -0.202 4.202 5 C -0.103 4.103 6 H 0.153 0.847 7 C -0.018 4.018 8 C -0.227 4.227 9 C -0.194 4.194 10 C -0.091 4.091 11 C 0.081 3.919 12 N -0.360 5.360 13 C 0.293 3.707 14 O -0.394 6.394 15 C 0.279 3.721 16 O -0.404 6.404 17 N -0.341 5.341 18 C 0.005 3.995 19 C -0.062 4.062 20 C -0.563 4.563 21 H 0.095 0.905 22 C -0.132 4.132 23 N -0.535 5.535 24 Si 0.708 3.292 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.190 1.190 28 O -0.063 6.063 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.253 0.747 39 H 0.245 0.755 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.016 -27.078 0.130 33.673 hybrid contribution 0.918 -0.428 -0.098 1.017 sum -19.098 -27.506 0.033 33.486 Atomic orbital electron populations 1.21397 0.91933 1.02432 1.02336 1.22544 0.95692 0.94821 1.02540 0.87273 1.23209 1.03277 1.01441 0.92240 1.20639 0.91818 1.03497 0.94368 0.84688 1.21461 0.86982 1.01633 0.91682 1.21518 0.97483 1.08291 0.95399 1.21708 0.95434 1.04042 0.98237 1.22108 0.91553 1.07931 0.87515 1.19643 0.88036 0.79675 1.04542 1.45842 1.12323 1.06746 1.71052 1.20459 0.83595 0.89073 0.77622 1.90767 1.32418 1.70045 1.46178 1.19869 0.85003 0.87427 0.79798 1.90757 1.32508 1.69594 1.47577 1.46205 1.10580 1.09793 1.67519 1.21730 1.00902 0.74741 1.02088 1.19831 0.91102 0.98089 0.97151 1.20875 0.97394 0.88697 1.49301 0.90532 1.24988 0.98959 0.94778 0.94481 1.69902 1.27730 1.06418 1.49458 0.86764 0.83343 0.80230 0.78851 1.20157 1.21222 1.18956 1.83941 1.19558 1.65286 1.37561 0.92242 0.91540 0.91803 0.87776 0.88022 0.83151 0.82898 0.89183 0.87657 0.74702 0.75527 0.91203 0.91201 0.95687 0.96121 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.19 37.16 0.38 -0.18 16 2 C -0.14 -0.86 6.11 -90.62 -0.55 -1.41 16 3 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.16 -0.99 9.81 -26.73 -0.26 -1.25 16 5 C -0.09 -0.55 5.96 -91.77 -0.55 -1.09 16 6 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 7 C 0.03 0.29 6.80 -35.62 -0.24 0.05 16 8 C -0.21 -1.70 10.81 -39.70 -0.43 -2.13 16 9 C -0.17 -1.48 10.81 -39.70 -0.43 -1.91 16 10 C -0.04 -0.38 6.69 -35.62 -0.24 -0.62 16 11 C 0.20 1.87 6.20 -5.19 -0.03 1.84 16 12 N -0.70 -7.90 5.54 -61.90 -0.34 -8.24 16 13 C 0.51 7.18 7.89 -11.59 -0.09 7.09 16 14 O -0.52 -8.07 16.48 5.49 0.09 -7.98 16 15 C 0.50 8.19 7.89 -11.59 -0.09 8.09 16 16 O -0.53 -9.72 16.48 5.50 0.09 -9.63 16 17 N -0.69 -11.74 5.55 -60.73 -0.34 -12.08 16 18 C 0.13 2.53 5.61 -4.04 -0.02 2.50 16 19 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 20 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 21 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 22 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 23 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 24 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 28 O -0.17 -1.70 10.36 5.70 0.06 -1.64 16 29 H 0.06 0.22 7.90 -51.93 -0.41 -0.19 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.46 8.05 -51.93 -0.42 0.04 16 33 H 0.10 0.72 7.96 -51.93 -0.41 0.30 16 34 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.42 4.55 7.94 -40.82 -0.32 4.22 16 39 H 0.41 6.42 7.94 -40.82 -0.32 6.09 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 43 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -32.44 382.75 -8.14 -40.59 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.47 Total: 5.76 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.11 Total: -2.64 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.09 Total: -46.67 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.24 Total: -19.24 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.44 -8.14 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321492148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.869 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds