Wall clock time and date at job start Tue Mar 31 2020 12:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.55336 * 2 1 4 4 C 1.53002 * 117.49883 * 145.70280 * 2 1 3 5 5 C 1.52999 * 117.49874 * 214.32502 * 2 1 3 6 6 H 1.08995 * 117.50075 * 0.02562 * 5 2 1 7 7 C 1.50704 * 117.49872 * 145.02181 * 5 2 1 8 8 C 1.34515 * 125.79099 * 239.99829 * 7 5 2 9 9 C 1.41385 * 106.83992 * 179.97438 * 8 7 5 10 10 C 1.34512 * 106.83926 * 0.23220 * 9 8 7 11 11 C 1.50702 * 125.78762 * 179.76997 * 10 9 8 12 12 N 1.46502 * 109.47150 * 90.02179 * 11 10 9 13 13 C 1.34778 * 120.00069 * 180.02562 * 12 11 10 14 14 O 1.21354 * 119.99793 * 359.97438 * 13 12 11 15 15 C 1.49448 * 120.00046 * 180.02562 * 13 12 11 16 16 O 1.21347 * 119.99853 * 359.97438 * 15 13 12 17 17 N 1.34778 * 120.00046 * 179.97438 * 15 13 12 18 18 C 1.46502 * 120.00069 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.46921 * 179.97438 * 18 17 15 20 20 C 1.50708 * 109.46792 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99838 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99761 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99840 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00007 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.47739 * 89.99926 * 24 22 20 26 26 H 1.48508 * 109.46963 * 210.00095 * 24 22 20 27 27 H 1.48505 * 109.47198 * 329.99287 * 24 22 20 28 28 O 1.34305 * 108.42433 * 359.63135 * 10 9 8 29 29 H 1.08999 * 109.46929 * 205.67385 * 1 2 3 30 30 H 1.08994 * 109.47239 * 325.67592 * 1 2 3 31 31 H 1.09001 * 109.47067 * 85.67305 * 1 2 3 32 32 H 1.08998 * 117.49742 * 0.02562 * 4 2 1 33 33 H 1.08995 * 117.50199 * 214.97752 * 4 2 1 34 34 H 1.08002 * 126.57938 * 359.94618 * 8 7 5 35 35 H 1.08002 * 126.57514 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.47283 * 210.02243 * 11 10 9 37 37 H 1.09005 * 109.47007 * 330.02445 * 11 10 9 38 38 H 0.97003 * 119.99826 * 359.97438 * 12 11 10 39 39 H 0.96997 * 119.99680 * 359.97438 * 17 15 13 40 40 H 1.08999 * 109.47080 * 300.00018 * 18 17 15 41 41 H 1.09005 * 109.46948 * 60.00059 * 18 17 15 42 42 H 1.08999 * 109.47568 * 300.00098 * 19 18 17 43 43 H 1.09005 * 109.46952 * 60.00440 * 19 18 17 44 44 H 0.97000 * 119.99531 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1212 0.7647 5 6 2.2365 -1.1208 -0.7653 6 1 1.6113 -1.8579 -1.2691 7 6 3.5293 -0.7807 -1.4610 8 6 3.7641 -0.8879 -2.7812 9 6 5.0962 -0.4658 -2.9959 10 6 5.5975 -0.1309 -1.7934 11 6 6.9930 0.3731 -1.5297 12 7 7.0103 1.8349 -1.6241 13 6 8.1599 2.5096 -1.4247 14 8 9.1807 1.9061 -1.1666 15 6 8.1774 4.0009 -1.5205 16 8 7.1567 4.6043 -1.7781 17 7 9.3269 4.6755 -1.3206 18 6 9.3442 6.1374 -1.4150 19 6 10.7609 6.6491 -1.1466 20 6 10.7788 8.1529 -1.2444 21 1 9.8704 8.6899 -1.4744 22 6 11.9548 8.8430 -1.0400 23 7 11.9705 10.1553 -1.1258 24 14 13.5260 7.9140 -0.6428 25 1 14.2336 7.5761 -1.9038 26 1 14.4021 8.7627 0.2043 27 1 13.1914 6.6648 0.0872 28 8 4.6424 -0.3189 -0.8681 29 1 -0.3633 -0.9262 0.4452 30 1 -0.3633 0.8487 0.5794 31 1 -0.3633 0.0775 -1.0247 32 1 1.6112 -1.8590 1.2675 33 1 3.1715 -0.8756 1.2681 34 1 3.0685 -1.2309 -3.5328 35 1 5.6135 -0.4246 -3.9431 36 1 7.3062 0.0698 -0.5306 37 1 7.6765 -0.0468 -2.2678 38 1 6.1945 2.3173 -1.8307 39 1 10.1428 4.1932 -1.1143 40 1 9.0311 6.4407 -2.4141 41 1 8.6607 6.5573 -0.6769 42 1 11.0736 6.3458 -0.1475 43 1 11.4447 6.2292 -1.8845 44 1 12.7979 10.6407 -0.9824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321492148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:57 Heat of formation + Delta-G solvation = -61.757097 kcal Electronic energy + Delta-G solvation = -25109.701897 eV Core-core repulsion = 21221.533704 eV Total energy + Delta-G solvation = -3888.168193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -43.73013 -41.73331 -39.71424 -38.71831 -37.07186 -36.20783 -34.80165 -34.06037 -32.14096 -31.83818 -29.61702 -27.99661 -26.96511 -24.71520 -23.24331 -22.85229 -22.65500 -21.72443 -21.57760 -20.95370 -19.84750 -19.02799 -18.06676 -17.90487 -17.25525 -17.20289 -16.51541 -16.43105 -16.18592 -16.10253 -15.66507 -15.32915 -15.00390 -14.81686 -14.58048 -14.56515 -14.12778 -13.95238 -13.83040 -13.39869 -13.32075 -13.07975 -13.01668 -12.92629 -12.81834 -12.40797 -12.23571 -12.20215 -11.78465 -11.60798 -11.51723 -11.05568 -10.96322 -10.79231 -10.75632 -10.50921 -10.26367 -9.31173 -8.30405 -6.37285 0.25895 0.37884 1.23202 1.39718 1.41329 1.52491 1.58979 1.77705 2.06329 2.36257 2.65713 2.83726 3.04817 3.29591 3.37917 3.58714 3.83036 3.84981 4.04065 4.09119 4.25599 4.33475 4.37730 4.38134 4.40100 4.66992 4.71770 4.79600 4.86116 4.90573 4.93138 4.96521 4.97432 5.04280 5.09599 5.18096 5.28509 5.36740 5.37761 5.49599 5.58139 5.81240 6.09927 6.19469 6.27627 6.61065 6.70728 6.87677 7.27304 8.85818 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023364 B = 0.001898 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.137452 B =14746.591009 C =15362.030336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.141 4.141 3 H 0.090 0.910 4 C -0.164 4.164 5 C -0.088 4.088 6 H 0.157 0.843 7 C 0.022 3.978 8 C -0.215 4.215 9 C -0.173 4.173 10 C -0.058 4.058 11 C 0.206 3.794 12 N -0.690 5.690 13 C 0.521 3.479 14 O -0.533 6.533 15 C 0.501 3.499 16 O -0.550 6.550 17 N -0.686 5.686 18 C 0.141 3.859 19 C -0.018 4.018 20 C -0.537 4.537 21 H 0.035 0.965 22 C 0.007 3.993 23 N -0.947 5.947 24 Si 0.953 3.047 25 H -0.265 1.265 26 H -0.286 1.286 27 H -0.241 1.241 28 O -0.186 6.186 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.418 0.582 39 H 0.419 0.581 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.259 -30.359 -0.297 36.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 H 0.108 0.892 4 C -0.201 4.201 5 C -0.105 4.105 6 H 0.175 0.825 7 C -0.029 4.029 8 C -0.234 4.234 9 C -0.192 4.192 10 C -0.107 4.107 11 C 0.084 3.916 12 N -0.344 5.344 13 C 0.302 3.698 14 O -0.409 6.409 15 C 0.282 3.718 16 O -0.428 6.428 17 N -0.338 5.338 18 C 0.019 3.981 19 C -0.055 4.055 20 C -0.575 4.575 21 H 0.054 0.946 22 C -0.190 4.190 23 N -0.587 5.587 24 Si 0.776 3.224 25 H -0.190 1.190 26 H -0.212 1.212 27 H -0.164 1.164 28 O -0.083 6.083 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.104 0.896 34 H 0.188 0.812 35 H 0.187 0.813 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.255 0.745 39 H 0.256 0.744 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.101 -30.156 0.037 36.242 hybrid contribution 0.781 0.539 -0.100 0.954 sum -19.320 -29.618 -0.063 35.362 Atomic orbital electron populations 1.21396 0.90456 1.03111 1.02785 1.22547 0.96751 0.93949 1.02729 0.89199 1.23250 1.02911 1.01797 0.92154 1.20857 0.91137 1.03950 0.94597 0.82512 1.21998 0.87259 1.01304 0.92325 1.21848 0.97780 1.08091 0.95674 1.22013 0.95661 1.02991 0.98576 1.22145 0.91623 1.09116 0.87826 1.19780 0.88600 0.77999 1.05209 1.45849 1.11402 1.07772 1.69378 1.19855 0.84195 0.87646 0.78127 1.90770 1.32977 1.69773 1.47408 1.20278 0.84209 0.88641 0.78701 1.90750 1.33253 1.70448 1.48383 1.45967 1.11460 1.08497 1.67860 1.21295 0.99061 0.76592 1.01202 1.19701 0.93003 0.94747 0.98078 1.21203 0.96057 0.91475 1.48758 0.94617 1.26002 1.03115 0.95632 0.94293 1.70061 1.28982 1.08527 1.51150 0.85619 0.78133 0.79477 0.79176 1.19047 1.21185 1.16381 1.83926 1.20232 1.65812 1.38351 0.90948 0.91607 0.91339 0.85822 0.89579 0.81151 0.81253 0.89048 0.86013 0.74478 0.74420 0.92153 0.92292 0.94564 0.94617 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.19 71.98 0.73 -0.17 16 2 C -0.14 -1.65 6.11 -10.79 -0.07 -1.71 16 3 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.16 -1.81 9.81 30.60 0.30 -1.51 16 5 C -0.09 -1.00 5.96 -11.54 -0.07 -1.07 16 6 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 7 C 0.02 0.36 6.80 24.83 0.17 0.52 16 8 C -0.22 -3.16 10.81 22.19 0.24 -2.92 16 9 C -0.17 -2.64 10.81 22.19 0.24 -2.40 16 10 C -0.06 -1.01 6.69 24.83 0.17 -0.84 16 11 C 0.21 3.47 6.20 85.63 0.53 4.00 16 12 N -0.69 -14.57 5.54 -468.12 -2.59 -17.17 16 13 C 0.52 13.88 7.89 87.27 0.69 14.57 16 14 O -0.53 -15.55 16.48 -3.26 -0.05 -15.60 16 15 C 0.50 15.95 7.89 87.27 0.69 16.63 16 16 O -0.55 -20.08 16.48 -3.24 -0.05 -20.13 16 17 N -0.69 -22.50 5.55 -464.41 -2.58 -25.08 16 18 C 0.14 5.59 5.61 86.38 0.48 6.08 16 19 C -0.02 -0.78 4.16 29.85 0.12 -0.65 16 20 C -0.54 -30.20 9.66 25.60 0.25 -29.95 16 21 H 0.04 2.23 7.99 -2.91 -0.02 2.20 16 22 C 0.01 0.41 5.47 84.65 0.46 0.87 16 23 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 24 Si 0.95 42.68 27.47 68.60 1.88 44.57 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 26 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 28 O -0.19 -3.69 10.36 -2.52 -0.03 -3.72 16 29 H 0.07 0.36 7.90 -2.39 -0.02 0.34 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.12 0.84 8.05 -2.39 -0.02 0.82 16 33 H 0.09 1.22 7.96 -2.39 -0.02 1.20 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.42 8.73 7.94 -92.71 -0.74 8.00 16 39 H 0.42 12.26 7.94 -92.71 -0.74 11.53 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 42 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 43 H 0.04 1.49 7.57 -2.38 -0.02 1.47 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -70.46 382.75 1.32 -69.14 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.50 Total: 24.88 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 4.94 Total: 1.44 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -4.87 Total: -100.56 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.13 Total: -39.45 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.88 Total: 44.57 kcal Total: -70.46 1.32 -69.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321492148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.379 kcal (2) G-P(sol) polarization free energy of solvation -70.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds