Wall clock time and date at job start Tue Mar 31 2020 13:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35897 * 117.00198 * 2 1 4 4 C 1.38739 * 120.05670 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94265 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05618 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94268 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.46852 * 339.99326 * 7 6 5 9 9 C 1.52999 * 109.47629 * 99.99630 * 7 6 5 10 10 N 1.46500 * 109.47232 * 219.99810 * 7 6 5 11 11 C 1.34773 * 120.00432 * 154.99421 * 10 7 6 12 12 O 1.21353 * 120.00047 * 0.02562 * 11 10 7 13 13 C 1.49454 * 120.00135 * 179.72278 * 11 10 7 14 14 O 1.21343 * 119.99752 * 0.28157 * 13 11 10 15 15 N 1.34777 * 120.00164 * 180.27489 * 13 11 10 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 11 17 17 C 1.53003 * 109.46671 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46681 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00300 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00286 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99512 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00323 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46983 * 89.99936 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00005 * 22 20 18 25 25 H 1.48505 * 109.47256 * 330.00011 * 22 20 18 26 26 C 1.38262 * 120.11514 * 0.26891 * 6 5 4 27 27 C 1.38148 * 120.05291 * 359.45894 * 26 6 5 28 28 H 1.09001 * 109.46998 * 59.99979 * 1 2 3 29 29 H 1.08998 * 109.47472 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 300.00211 * 1 2 3 31 31 H 1.07997 * 120.02653 * 359.95366 * 4 3 2 32 32 H 1.08002 * 119.96988 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46828 * 59.99802 * 9 7 6 34 34 H 1.08998 * 109.46936 * 180.02562 * 9 7 6 35 35 H 1.09003 * 109.47063 * 299.99964 * 9 7 6 36 36 H 0.97001 * 119.99454 * 335.00156 * 10 7 6 37 37 H 0.97000 * 119.99555 * 0.02562 * 15 13 11 38 38 H 1.08994 * 109.46952 * 300.00262 * 16 15 13 39 39 H 1.08992 * 109.46844 * 60.00609 * 16 15 13 40 40 H 1.08994 * 109.47336 * 299.99647 * 17 16 15 41 41 H 1.08992 * 109.47300 * 60.00508 * 17 16 15 42 42 H 0.96999 * 119.99804 * 180.02562 * 21 20 18 43 43 H 1.07993 * 119.97525 * 179.70752 * 26 6 5 44 44 H 1.07997 * 120.02726 * 180.27714 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 3.9861 5.0184 -0.0017 8 1 5.0119 4.9038 0.3488 9 6 3.9930 5.5862 -1.4224 10 7 3.2661 5.9342 0.8867 11 6 3.9110 6.9774 1.4453 12 8 5.0881 7.1585 1.2122 13 6 3.1749 7.9152 2.3467 14 8 1.9978 7.7343 2.5795 15 7 3.8185 8.9616 2.9010 16 6 3.0970 9.8805 3.7849 17 6 4.0513 10.9716 4.2746 18 6 3.3094 11.9165 5.1844 19 1 2.2619 11.7552 5.3922 20 6 3.9677 12.9870 5.7516 21 7 5.2431 13.1837 5.4981 22 14 3.0479 14.1586 6.8787 23 1 3.1444 13.6757 8.2797 24 1 3.6473 15.5137 6.7797 25 1 1.6206 14.2178 6.4728 26 6 1.9212 3.6048 0.0061 27 6 1.2915 2.3751 0.0010 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.0208 0.3799 -0.0002 32 1 5.1346 2.5749 -0.0019 33 1 2.9672 5.7008 -1.7728 34 1 4.4883 6.5572 -1.4232 35 1 4.5288 4.9049 -2.0834 36 1 2.3252 5.7896 1.0728 37 1 4.7593 9.1063 2.7146 38 1 2.2724 10.3380 3.2384 39 1 2.7052 9.3296 4.6398 40 1 4.8762 10.5145 4.8210 41 1 4.4428 11.5225 3.4195 42 1 5.7064 13.9366 5.8974 43 1 1.3343 4.5113 0.0113 44 1 0.2130 2.3202 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321669905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:11 Heat of formation + Delta-G solvation = -93.250050 kcal Electronic energy + Delta-G solvation = -25476.041980 eV Core-core repulsion = 21586.508150 eV Total energy + Delta-G solvation = -3889.533830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85119 -40.27324 -38.72010 -37.89624 -35.67191 -34.89481 -32.87176 -31.66124 -31.47499 -29.81817 -29.30912 -27.61178 -25.84829 -24.34028 -23.52562 -22.68498 -21.15720 -20.83373 -20.15773 -18.75751 -18.28904 -17.02500 -16.52942 -16.23220 -16.15132 -16.00071 -15.71404 -15.23640 -14.92627 -14.53474 -14.47541 -14.25802 -14.04003 -13.87948 -13.56825 -13.46830 -13.03445 -12.90509 -12.61530 -12.37886 -12.32765 -12.17651 -11.48197 -11.41008 -11.34738 -11.23575 -11.17820 -11.06457 -10.66971 -10.40030 -9.80009 -9.46304 -9.43757 -9.37917 -9.20037 -8.69815 -8.52067 -8.41935 -6.10301 -4.13941 0.93208 0.96251 1.61417 2.53352 2.84451 3.28844 3.33243 3.35187 3.38797 3.43779 3.89077 4.25168 4.34717 4.40192 4.47487 4.64900 4.71227 4.75191 4.89876 4.93555 5.01707 5.03530 5.11475 5.24064 5.26564 5.41761 5.55319 5.63912 5.80667 5.91295 5.95542 6.03928 6.17891 6.23665 6.28464 6.32504 6.59449 6.69180 6.95232 7.05611 7.46598 7.57789 7.66420 7.87001 7.92665 8.21087 8.33959 8.91603 9.50895 11.01149 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025740 B = 0.001943 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.542055 B =14405.193429 C =15090.621045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.148 4.148 5 C -0.065 4.065 6 C -0.130 4.130 7 C 0.186 3.814 8 H 0.100 0.900 9 C -0.159 4.159 10 N -0.701 5.701 11 C 0.510 3.490 12 O -0.519 6.519 13 C 0.497 3.503 14 O -0.534 6.534 15 N -0.686 5.686 16 C 0.119 3.881 17 C 0.011 3.989 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.070 4.070 27 C -0.203 4.203 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.411 0.589 37 H 0.411 0.589 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.127 0.873 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 -25.631 -15.077 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.167 4.167 5 C -0.084 4.084 6 C -0.131 4.131 7 C 0.082 3.918 8 H 0.118 0.882 9 C -0.217 4.217 10 N -0.356 5.356 11 C 0.291 3.709 12 O -0.394 6.394 13 C 0.276 3.724 14 O -0.412 6.412 15 N -0.336 5.336 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.089 4.089 27 C -0.222 4.222 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.248 0.752 37 H 0.246 0.754 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.144 0.856 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.747 -25.662 -15.021 30.285 hybrid contribution -0.732 0.809 0.645 1.267 sum -6.479 -24.853 -14.376 29.433 Atomic orbital electron populations 1.23083 0.78175 1.04073 1.01553 1.86069 1.21575 1.26926 1.88604 1.19087 0.92434 0.84195 0.96078 1.20420 0.91371 0.98632 1.06279 1.20818 1.00050 0.90622 0.96883 1.19791 0.93815 0.94462 1.04985 1.19815 0.96521 0.84969 0.90507 0.88156 1.22186 1.02700 1.02033 0.94822 1.45944 1.15009 1.27151 1.47516 1.20461 0.87182 0.82178 0.81057 1.90754 1.15440 1.72548 1.60620 1.19975 0.87264 0.82935 0.82179 1.90723 1.15437 1.73553 1.61515 1.46233 1.15269 1.25836 1.46302 1.21935 0.96385 0.90438 0.91541 1.19359 0.94535 0.91939 0.96857 1.21011 0.96684 1.10141 1.28367 0.92175 1.25006 0.94931 0.97741 0.96629 1.69959 1.08978 1.30070 1.44018 0.86493 0.79953 0.80072 0.80909 1.20557 1.21154 1.19742 1.20756 0.93850 0.97345 0.96938 1.21223 1.00233 0.92132 1.08574 0.92535 0.88157 0.92445 0.84924 0.84837 0.92105 0.91345 0.91146 0.75213 0.75363 0.91866 0.91868 0.95644 0.95634 0.92776 0.85556 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.67 10.50 -19.42 -0.20 -2.87 16 3 C 0.13 1.11 6.69 -39.21 -0.26 0.85 16 4 C -0.15 -1.22 9.99 -39.43 -0.39 -1.62 16 5 C -0.07 -0.52 9.66 -39.61 -0.38 -0.90 16 6 C -0.13 -1.13 4.96 -104.60 -0.52 -1.65 16 7 C 0.19 1.79 2.78 -69.08 -0.19 1.60 16 8 H 0.10 1.03 7.44 -51.92 -0.39 0.65 16 9 C -0.16 -1.39 9.46 37.16 0.35 -1.04 16 10 N -0.70 -8.13 5.02 -55.36 -0.28 -8.41 16 11 C 0.51 7.56 7.85 -11.59 -0.09 7.47 16 12 O -0.52 -8.54 16.14 5.49 0.09 -8.45 16 13 C 0.50 8.53 7.89 -11.58 -0.09 8.44 16 14 O -0.53 -10.06 16.48 5.50 0.09 -9.97 16 15 N -0.69 -12.48 5.55 -60.73 -0.34 -12.81 16 16 C 0.12 2.48 5.61 -4.04 -0.02 2.45 16 17 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 18 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 22 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.07 -0.59 9.05 -39.61 -0.36 -0.94 16 27 C -0.20 -1.62 9.04 -39.43 -0.36 -1.98 16 28 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.13 0.81 8.03 -52.49 -0.42 0.39 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.41 4.41 6.32 -40.82 -0.26 4.15 16 37 H 0.41 7.12 7.94 -40.82 -0.32 6.79 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.13 0.92 6.89 -52.49 -0.36 0.55 16 44 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -32.27 377.77 -7.33 -39.61 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.22 Total: 5.50 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.88 Total: 0.80 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.12 Total: -46.54 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.02 Total: -21.29 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.27 -7.33 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321669905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.642 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds