Wall clock time and date at job start Tue Mar 31 2020 13:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46750 * 2 1 4 4 C 1.53003 * 109.47371 * 119.99845 * 2 1 3 5 5 C 1.50701 * 109.47149 * 185.00121 * 4 2 1 6 6 C 1.34509 * 125.78745 * 90.01506 * 5 4 2 7 7 C 1.41379 * 106.83688 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.84688 * 0.02562 * 7 6 5 9 9 O 1.34300 * 125.78569 * 269.97566 * 5 4 2 10 10 N 1.46501 * 109.47044 * 240.00385 * 2 1 3 11 11 C 1.34776 * 120.00299 * 84.99549 * 10 2 1 12 12 O 1.21349 * 119.99960 * 0.02562 * 11 10 2 13 13 C 1.49447 * 119.99692 * 179.97438 * 11 10 2 14 14 O 1.21347 * 120.00419 * 355.01327 * 13 11 10 15 15 N 1.34781 * 119.99364 * 175.00826 * 13 11 10 16 16 C 1.46509 * 119.99687 * 185.77953 * 15 13 11 17 17 C 1.52993 * 109.47034 * 183.69485 * 16 15 13 18 18 C 1.50697 * 115.55453 * 306.41949 * 17 16 15 19 19 H 1.08000 * 120.00110 * 145.10564 * 18 17 16 20 20 C 1.37875 * 119.99671 * 325.11007 * 18 17 16 21 21 N 1.31512 * 120.00260 * 349.43818 * 20 18 17 22 22 Si 1.86803 * 119.99858 * 169.44058 * 20 18 17 23 23 H 1.48493 * 109.47439 * 90.00131 * 22 20 18 24 24 H 1.48508 * 109.46899 * 210.00117 * 22 20 18 25 25 H 1.48496 * 109.47380 * 329.99647 * 22 20 18 26 26 C 1.53005 * 117.49916 * 160.74334 * 17 16 15 27 27 C 1.53003 * 117.49714 * 92.08907 * 17 16 15 28 28 H 1.08998 * 109.47176 * 299.99722 * 1 2 3 29 29 H 1.08998 * 109.47504 * 60.00263 * 1 2 3 30 30 H 1.09003 * 109.46750 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46730 * 65.00192 * 4 2 1 32 32 H 1.08995 * 109.46849 * 305.00496 * 4 2 1 33 33 H 1.07996 * 126.57890 * 359.97223 * 6 5 4 34 34 H 1.08006 * 126.58117 * 180.26629 * 7 6 5 35 35 H 1.07998 * 125.79348 * 180.02562 * 8 7 6 36 36 H 0.96996 * 119.99415 * 264.99645 * 10 2 1 37 37 H 0.96994 * 120.00113 * 5.78304 * 15 13 11 38 38 H 1.08998 * 109.46944 * 303.69745 * 16 15 13 39 39 H 1.08997 * 109.47050 * 63.69812 * 16 15 13 40 40 H 0.97000 * 120.00378 * 185.03178 * 21 20 18 41 41 H 1.09000 * 117.49577 * 0.02562 * 26 17 16 42 42 H 1.09000 * 117.49733 * 145.01739 * 26 17 16 43 43 H 1.09000 * 117.49875 * 214.98182 * 27 17 16 44 44 H 1.08998 * 117.49904 * 359.97295 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.6148 1.3127 6 6 4.2363 0.3661 1.9170 7 6 5.6066 0.0708 1.7334 8 6 5.6679 -1.0726 1.0275 9 8 4.4142 -1.4837 0.7761 10 7 2.0183 -0.6905 -1.1962 11 6 2.1470 -0.0182 -2.3572 12 8 1.8588 1.1593 -2.4116 13 6 2.6457 -0.7226 -3.5773 14 8 3.0202 -1.8744 -3.5025 15 7 2.6793 -0.0785 -4.7607 16 6 3.0472 -0.8039 -5.9793 17 6 3.0973 0.1707 -7.1575 18 6 1.8557 0.9978 -7.3703 19 1 1.9382 2.0137 -7.7276 20 6 0.6144 0.4577 -7.1087 21 7 0.4939 -0.8310 -6.8756 22 14 -0.8961 1.5564 -7.0853 23 1 -1.4848 1.6177 -8.4472 24 1 -1.8967 1.0022 -6.1380 25 1 -0.5079 2.9226 -6.6518 26 6 3.8794 -0.2618 -8.3994 27 6 4.4439 0.8226 -7.4782 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7518 -1.7715 1.2056 32 1 1.6054 -0.2617 2.1369 33 1 3.8256 1.2160 2.4416 34 1 6.4438 0.6498 2.0945 35 1 6.5718 -1.5754 0.7167 36 1 2.2491 -1.6317 -1.1526 37 1 2.4600 0.8653 -4.8056 38 1 4.0262 -1.2642 -5.8465 39 1 2.3060 -1.5777 -6.1792 40 1 -0.3861 -1.2235 -6.7639 41 1 4.3579 -1.2409 -8.3771 42 1 3.4960 0.0521 -9.3702 43 1 4.4316 1.8495 -7.8434 44 1 5.2939 0.5574 -6.8496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330214686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:31 Heat of formation + Delta-G solvation = -35.620483 kcal Electronic energy + Delta-G solvation = -27193.698025 eV Core-core repulsion = 23306.663201 eV Total energy + Delta-G solvation = -3887.034824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.65796 -40.10032 -38.18897 -36.66959 -36.31028 -33.33945 -33.05091 -32.20861 -31.92142 -30.03205 -26.77722 -26.43640 -25.54394 -23.69549 -21.89916 -21.38212 -21.16654 -20.46513 -19.75022 -19.36145 -18.02189 -17.42189 -16.62238 -16.22806 -16.04485 -15.38084 -15.22419 -14.98464 -14.74082 -14.46655 -13.86836 -13.67911 -13.44289 -13.32220 -12.93824 -12.93350 -12.86077 -12.67348 -12.45712 -12.17870 -11.79220 -11.73737 -11.53263 -11.27137 -11.06342 -10.99175 -10.79981 -10.51633 -10.28583 -10.01970 -9.63545 -9.20082 -9.13597 -8.94296 -8.85736 -8.54690 -8.31109 -7.99240 -6.10265 -4.19398 1.62536 2.02942 2.50659 2.85094 2.90896 3.23647 3.32702 3.36835 3.85895 4.22554 4.31027 4.45652 4.57995 4.80329 4.89588 4.90731 5.01478 5.15303 5.22319 5.29453 5.39792 5.48246 5.55639 5.69053 5.75741 5.85503 5.97270 5.99682 6.11905 6.26525 6.37598 6.45426 6.50228 6.57145 6.66200 6.84560 7.01354 7.03586 7.22502 7.29092 7.46108 7.49484 7.86825 8.07834 8.28289 8.40899 8.78546 8.83819 9.42079 10.87137 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.003672 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.813604 B = 7623.960846 C = 8768.131068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 H 0.095 0.905 4 C -0.048 4.048 5 C -0.011 4.011 6 C -0.210 4.210 7 C -0.217 4.217 8 C -0.038 4.038 9 O -0.170 6.170 10 N -0.703 5.703 11 C 0.511 3.489 12 O -0.522 6.522 13 C 0.494 3.506 14 O -0.547 6.547 15 N -0.651 5.651 16 C 0.158 3.842 17 C 0.036 3.964 18 C -0.499 4.499 19 H 0.063 0.937 20 C 0.076 3.924 21 N -0.871 5.871 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.270 1.270 26 C -0.193 4.193 27 C -0.211 4.211 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.201 0.799 36 H 0.411 0.589 37 H 0.412 0.588 38 H 0.034 0.966 39 H 0.114 0.886 40 H 0.264 0.736 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 -0.636 17.779 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.113 0.887 4 C -0.086 4.086 5 C -0.061 4.061 6 C -0.229 4.229 7 C -0.236 4.236 8 C -0.106 4.106 9 O -0.065 6.065 10 N -0.357 5.357 11 C 0.293 3.707 12 O -0.396 6.396 13 C 0.273 3.727 14 O -0.427 6.427 15 N -0.299 5.299 16 C 0.036 3.964 17 C 0.035 3.965 18 C -0.536 4.536 19 H 0.082 0.918 20 C -0.128 4.128 21 N -0.507 5.507 22 Si 0.718 3.282 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.195 1.195 26 C -0.232 4.232 27 C -0.248 4.248 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.218 0.782 36 H 0.247 0.753 37 H 0.249 0.751 38 H 0.052 0.948 39 H 0.132 0.868 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.908 -0.976 17.702 18.155 hybrid contribution -0.559 0.738 -0.038 0.926 sum 3.349 -0.238 17.665 17.981 Atomic orbital electron populations 1.22202 0.94186 1.02765 1.03216 1.21049 0.94439 0.97761 0.82878 0.88687 1.20522 0.85601 1.03335 0.99101 1.22279 0.92318 0.91523 0.99969 1.21565 0.93350 1.01410 1.06578 1.21810 0.97487 0.99084 1.05209 1.24045 0.85834 0.98059 1.02650 1.84045 1.15639 1.45625 1.61212 1.45795 1.66385 1.14898 1.08660 1.20586 0.78270 0.87007 0.84854 1.90729 1.48423 1.15598 1.84899 1.19787 0.81306 0.86846 0.84745 1.90679 1.48993 1.17263 1.85760 1.45700 1.63502 1.14732 1.05969 1.21203 0.98662 0.95626 0.80897 1.19163 0.89846 0.95852 0.91654 1.20502 0.88931 0.98698 1.45462 0.91840 1.24962 0.98991 0.94943 0.93934 1.69823 1.23687 1.10189 1.47014 0.86585 0.82475 0.81185 0.77924 1.20602 1.21030 1.19450 1.22923 1.06663 0.96733 0.96865 1.22974 0.99166 0.97178 1.05526 0.91280 0.91227 0.91968 0.89184 0.87087 0.83597 0.83611 0.78222 0.75252 0.75096 0.94821 0.86793 0.92603 0.91438 0.90081 0.90466 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.14 1.62 2.56 -67.93 -0.17 1.45 16 3 H 0.10 1.21 7.58 -51.93 -0.39 0.82 16 4 C -0.05 -0.41 5.29 -27.88 -0.15 -0.56 16 5 C -0.01 -0.12 6.30 -35.63 -0.22 -0.34 16 6 C -0.21 -2.24 10.81 -39.71 -0.43 -2.67 16 7 C -0.22 -2.26 10.91 -39.70 -0.43 -2.70 16 8 C -0.04 -0.41 12.09 29.42 0.36 -0.05 16 9 O -0.17 -2.12 10.65 5.70 0.06 -2.06 16 10 N -0.70 -10.26 4.78 -54.23 -0.26 -10.52 16 11 C 0.51 9.57 7.85 -11.59 -0.09 9.48 16 12 O -0.52 -10.68 16.15 5.50 0.09 -10.59 16 13 C 0.49 10.52 7.88 -11.58 -0.09 10.43 16 14 O -0.55 -12.33 16.48 5.50 0.09 -12.24 16 15 N -0.65 -14.63 5.27 -60.73 -0.32 -14.95 16 16 C 0.16 3.74 4.75 -4.04 -0.02 3.72 16 17 C 0.04 0.85 2.00 -155.66 -0.31 0.53 16 18 C -0.50 -12.87 8.27 -34.44 -0.28 -13.15 16 19 H 0.06 1.64 7.84 -52.49 -0.41 1.23 16 20 C 0.08 1.98 5.13 -17.82 -0.09 1.89 16 21 N -0.87 -23.28 10.75 55.43 0.60 -22.68 16 22 Si 0.89 20.60 29.55 -169.99 -5.02 15.57 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.19 -4.23 9.96 -26.69 -0.27 -4.49 16 27 C -0.21 -4.44 9.92 -26.69 -0.26 -4.71 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.41 5.77 8.08 -40.82 -0.33 5.44 16 37 H 0.41 9.44 7.41 -40.82 -0.30 9.14 16 38 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 39 H 0.11 3.01 6.04 -51.93 -0.31 2.69 16 40 H 0.26 6.85 8.32 -40.82 -0.34 6.52 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -30.32 378.93 -7.55 -37.87 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -6.38 Total: 16.39 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.12 Total: -2.50 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.02 Total: -48.15 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.24 Total: -24.89 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.32 -7.55 -37.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330214686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.251 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds