Wall clock time and date at job start Tue Mar 31 2020 13:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46750 * 2 1 4 4 C 1.53003 * 109.47371 * 119.99845 * 2 1 3 5 5 C 1.50701 * 109.47149 * 185.00121 * 4 2 1 6 6 C 1.34509 * 125.78745 * 90.01506 * 5 4 2 7 7 C 1.41379 * 106.83688 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.84688 * 0.02562 * 7 6 5 9 9 O 1.34300 * 125.78569 * 269.97566 * 5 4 2 10 10 N 1.46501 * 109.47044 * 240.00385 * 2 1 3 11 11 C 1.34776 * 120.00299 * 84.99549 * 10 2 1 12 12 O 1.21349 * 119.99960 * 0.02562 * 11 10 2 13 13 C 1.49447 * 119.99692 * 179.97438 * 11 10 2 14 14 O 1.21347 * 120.00419 * 355.01327 * 13 11 10 15 15 N 1.34781 * 119.99364 * 175.00826 * 13 11 10 16 16 C 1.46509 * 119.99687 * 185.77953 * 15 13 11 17 17 C 1.52993 * 109.47034 * 183.69485 * 16 15 13 18 18 C 1.50697 * 115.55453 * 306.41949 * 17 16 15 19 19 H 1.08000 * 120.00110 * 145.10564 * 18 17 16 20 20 C 1.37875 * 119.99671 * 325.11007 * 18 17 16 21 21 N 1.31512 * 120.00260 * 349.43818 * 20 18 17 22 22 Si 1.86803 * 119.99858 * 169.44058 * 20 18 17 23 23 H 1.48493 * 109.47439 * 90.00131 * 22 20 18 24 24 H 1.48508 * 109.46899 * 210.00117 * 22 20 18 25 25 H 1.48496 * 109.47380 * 329.99647 * 22 20 18 26 26 C 1.53005 * 117.49916 * 160.74334 * 17 16 15 27 27 C 1.53003 * 117.49714 * 92.08907 * 17 16 15 28 28 H 1.08998 * 109.47176 * 299.99722 * 1 2 3 29 29 H 1.08998 * 109.47504 * 60.00263 * 1 2 3 30 30 H 1.09003 * 109.46750 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46730 * 65.00192 * 4 2 1 32 32 H 1.08995 * 109.46849 * 305.00496 * 4 2 1 33 33 H 1.07996 * 126.57890 * 359.97223 * 6 5 4 34 34 H 1.08006 * 126.58117 * 180.26629 * 7 6 5 35 35 H 1.07998 * 125.79348 * 180.02562 * 8 7 6 36 36 H 0.96996 * 119.99415 * 264.99645 * 10 2 1 37 37 H 0.96994 * 120.00113 * 5.78304 * 15 13 11 38 38 H 1.08998 * 109.46944 * 303.69745 * 16 15 13 39 39 H 1.08997 * 109.47050 * 63.69812 * 16 15 13 40 40 H 0.97000 * 120.00378 * 185.03178 * 21 20 18 41 41 H 1.09000 * 117.49577 * 0.02562 * 26 17 16 42 42 H 1.09000 * 117.49733 * 145.01739 * 26 17 16 43 43 H 1.09000 * 117.49875 * 214.98182 * 27 17 16 44 44 H 1.08998 * 117.49904 * 359.97295 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.6148 1.3127 6 6 4.2363 0.3661 1.9170 7 6 5.6066 0.0708 1.7334 8 6 5.6679 -1.0726 1.0275 9 8 4.4142 -1.4837 0.7761 10 7 2.0183 -0.6905 -1.1962 11 6 2.1470 -0.0182 -2.3572 12 8 1.8588 1.1593 -2.4116 13 6 2.6457 -0.7226 -3.5773 14 8 3.0202 -1.8744 -3.5025 15 7 2.6793 -0.0785 -4.7607 16 6 3.0472 -0.8039 -5.9793 17 6 3.0973 0.1707 -7.1575 18 6 1.8557 0.9978 -7.3703 19 1 1.9382 2.0137 -7.7276 20 6 0.6144 0.4577 -7.1087 21 7 0.4939 -0.8310 -6.8756 22 14 -0.8961 1.5564 -7.0853 23 1 -1.4848 1.6177 -8.4472 24 1 -1.8967 1.0022 -6.1380 25 1 -0.5079 2.9226 -6.6518 26 6 3.8794 -0.2618 -8.3994 27 6 4.4439 0.8226 -7.4782 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7518 -1.7715 1.2056 32 1 1.6054 -0.2617 2.1369 33 1 3.8256 1.2160 2.4416 34 1 6.4438 0.6498 2.0945 35 1 6.5718 -1.5754 0.7167 36 1 2.2491 -1.6317 -1.1526 37 1 2.4600 0.8653 -4.8056 38 1 4.0262 -1.2642 -5.8465 39 1 2.3060 -1.5777 -6.1792 40 1 -0.3861 -1.2235 -6.7639 41 1 4.3579 -1.2409 -8.3771 42 1 3.4960 0.0521 -9.3702 43 1 4.4316 1.8495 -7.8434 44 1 5.2939 0.5574 -6.8496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330214686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:30 Heat of formation + Delta-G solvation = -55.035052 kcal Electronic energy + Delta-G solvation = -27194.539904 eV Core-core repulsion = 23306.663201 eV Total energy + Delta-G solvation = -3887.876703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.45749 -41.61646 -39.77589 -38.45523 -37.47570 -34.96090 -34.17050 -33.98058 -33.01461 -30.90753 -28.51325 -27.50540 -27.20036 -25.16843 -22.98163 -22.70990 -22.33755 -21.36244 -21.27293 -21.12531 -19.60008 -18.30305 -18.04755 -17.92533 -17.09289 -16.89093 -16.63995 -16.58898 -16.16139 -15.78983 -15.42576 -15.20621 -14.80550 -14.39283 -14.31854 -14.08668 -13.71428 -13.69082 -13.60126 -13.44610 -13.36856 -12.94268 -12.91080 -12.73959 -12.68545 -12.48212 -12.32768 -12.09507 -12.06594 -11.44352 -11.12172 -10.82627 -10.70846 -10.58930 -10.35579 -10.16642 -9.83562 -9.34495 -8.07112 -6.20935 0.44559 0.82379 1.38339 1.44355 1.46735 1.51758 1.72683 2.16327 2.25033 2.39014 2.76208 3.04164 3.54047 3.66641 3.71423 3.77604 4.07650 4.16826 4.20793 4.25027 4.32388 4.48599 4.56427 4.67487 4.69667 4.74599 4.78181 4.90407 4.95792 4.96527 5.05275 5.05918 5.23773 5.25449 5.27389 5.33528 5.46159 5.55322 5.57831 5.64665 5.87724 6.03720 6.24734 6.34187 6.52338 6.78274 6.85764 7.10333 7.41900 8.88201 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.003672 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.813604 B = 7623.960846 C = 8768.131068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.082 0.918 4 C -0.039 4.039 5 C -0.029 4.029 6 C -0.220 4.220 7 C -0.229 4.229 8 C -0.054 4.054 9 O -0.192 6.192 10 N -0.685 5.685 11 C 0.513 3.487 12 O -0.544 6.544 13 C 0.489 3.511 14 O -0.563 6.563 15 N -0.655 5.655 16 C 0.170 3.830 17 C 0.005 3.995 18 C -0.509 4.509 19 H 0.057 0.943 20 C 0.041 3.959 21 N -0.892 5.892 22 Si 0.940 3.060 23 H -0.275 1.275 24 H -0.289 1.289 25 H -0.268 1.268 26 C -0.189 4.189 27 C -0.189 4.189 28 H 0.102 0.898 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.224 0.776 36 H 0.415 0.585 37 H 0.410 0.590 38 H 0.038 0.962 39 H 0.085 0.915 40 H 0.260 0.740 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -0.196 19.409 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.100 0.900 4 C -0.076 4.076 5 C -0.078 4.078 6 C -0.239 4.239 7 C -0.248 4.248 8 C -0.121 4.121 9 O -0.089 6.089 10 N -0.338 5.338 11 C 0.294 3.706 12 O -0.422 6.422 13 C 0.270 3.730 14 O -0.444 6.444 15 N -0.303 5.303 16 C 0.047 3.953 17 C 0.004 3.996 18 C -0.546 4.546 19 H 0.075 0.925 20 C -0.161 4.161 21 N -0.529 5.529 22 Si 0.766 3.234 23 H -0.201 1.201 24 H -0.215 1.215 25 H -0.193 1.193 26 C -0.228 4.228 27 C -0.226 4.226 28 H 0.121 0.879 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.165 0.835 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.240 0.760 36 H 0.252 0.748 37 H 0.246 0.754 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.991 -0.546 19.361 19.775 hybrid contribution -0.514 0.585 -0.502 0.926 sum 3.477 0.039 18.859 19.176 Atomic orbital electron populations 1.22174 0.92907 1.03513 1.03272 1.21329 0.95354 0.97195 0.82472 0.89968 1.20619 0.84175 1.04130 0.98652 1.22774 0.93316 0.91595 1.00154 1.21935 0.93606 1.01834 1.06537 1.22174 0.98203 0.99270 1.05131 1.24651 0.86115 0.98570 1.02740 1.84031 1.16491 1.46521 1.61842 1.45875 1.64563 1.14975 1.08400 1.20113 0.78715 0.86682 0.85121 1.90718 1.49984 1.16269 1.85201 1.20313 0.80591 0.86751 0.85380 1.90655 1.49559 1.17959 1.86201 1.45678 1.63920 1.14503 1.06207 1.20916 0.97753 0.95063 0.81545 1.19219 0.90607 0.97052 0.92682 1.20691 0.90024 0.98623 1.45272 0.92457 1.25479 1.00958 0.95731 0.93936 1.69952 1.23724 1.11193 1.48035 0.85823 0.79950 0.79826 0.77809 1.20108 1.21469 1.19301 1.22930 1.06032 0.97793 0.96039 1.22975 0.97898 0.97240 1.04479 0.87936 0.94427 0.90879 0.87874 0.83502 0.81847 0.81877 0.75960 0.74824 0.75445 0.94426 0.89756 0.92987 0.90178 0.90416 0.89875 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.48 71.98 0.68 -2.26 16 2 C 0.14 2.93 2.56 44.99 0.12 3.04 16 3 H 0.08 1.99 7.58 -2.39 -0.02 1.97 16 4 C -0.04 -0.56 5.29 29.85 0.16 -0.40 16 5 C -0.03 -0.58 6.30 24.83 0.16 -0.43 16 6 C -0.22 -4.31 10.81 22.19 0.24 -4.07 16 7 C -0.23 -4.46 10.91 22.19 0.24 -4.22 16 8 C -0.05 -1.09 12.09 66.97 0.81 -0.28 16 9 O -0.19 -4.63 10.65 -2.53 -0.03 -4.65 16 10 N -0.68 -19.53 4.78 -443.86 -2.12 -21.65 16 11 C 0.51 19.27 7.85 87.27 0.69 19.96 16 12 O -0.54 -22.46 16.15 -3.24 -0.05 -22.51 16 13 C 0.49 21.10 7.88 87.27 0.69 21.78 16 14 O -0.56 -25.63 16.48 -3.24 -0.05 -25.68 16 15 N -0.66 -29.88 5.27 -464.41 -2.45 -32.33 16 16 C 0.17 8.12 4.75 86.38 0.41 8.53 16 17 C 0.01 0.24 2.00 -52.93 -0.11 0.13 16 18 C -0.51 -26.31 8.27 25.60 0.21 -26.09 16 19 H 0.06 2.96 7.84 -2.91 -0.02 2.94 16 20 C 0.04 2.14 5.13 84.65 0.43 2.57 16 21 N -0.89 -48.41 10.75 21.45 0.23 -48.18 16 22 Si 0.94 42.45 29.55 68.60 2.03 44.48 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 C -0.19 -8.10 9.96 30.62 0.30 -7.79 16 27 C -0.19 -7.66 9.92 30.62 0.30 -7.35 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.22 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.41 11.32 8.08 -92.71 -0.75 10.58 16 37 H 0.41 19.07 7.41 -92.71 -0.69 18.38 16 38 H 0.04 1.72 8.06 -2.39 -0.02 1.71 16 39 H 0.08 4.56 6.04 -2.39 -0.01 4.55 16 40 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 41 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -65.60 378.93 2.48 -63.12 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -0.41 Total: 44.29 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 5.34 Total: 3.12 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -4.34 Total: -102.16 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.13 Total: -52.84 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -65.60 2.48 -63.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330214686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.081 kcal (2) G-P(sol) polarization free energy of solvation -65.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds