Wall clock time and date at job start Tue Mar 31 2020 13:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47302 * 2 1 4 4 C 1.50698 * 109.47273 * 120.00571 * 2 1 3 5 5 C 1.33393 * 125.20094 * 259.99574 * 4 2 1 6 6 C 1.38420 * 114.92237 * 179.97438 * 5 4 2 7 7 C 1.33395 * 114.92023 * 359.97438 * 6 5 4 8 8 S 1.75882 * 125.20452 * 79.68937 * 4 2 1 9 9 N 1.46903 * 109.46793 * 239.99976 * 2 1 3 10 10 C 1.46896 * 111.00050 * 183.95312 * 9 2 1 11 11 C 1.38579 * 110.99746 * 60.00244 * 9 2 1 12 12 N 1.31215 * 126.47781 * 58.35140 * 11 9 2 13 13 N 1.28521 * 109.86313 * 179.82466 * 12 11 9 14 14 C 1.30291 * 110.05346 * 0.44742 * 13 12 11 15 15 C 1.50701 * 126.34596 * 179.69323 * 14 13 12 16 16 C 1.52997 * 109.47242 * 270.04364 * 15 14 13 17 17 C 1.50701 * 109.47242 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00179 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99971 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99605 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 119.99985 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47299 * 89.99964 * 21 19 17 23 23 H 1.48507 * 109.47065 * 209.99609 * 21 19 17 24 24 H 1.48494 * 109.47535 * 329.99683 * 21 19 17 25 25 N 1.36462 * 126.47197 * 238.66150 * 11 9 2 26 26 C 1.46498 * 127.13364 * 0.02562 * 25 11 9 27 27 H 1.08997 * 109.47188 * 59.99530 * 1 2 3 28 28 H 1.08997 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46621 * 299.99821 * 1 2 3 30 30 H 1.08003 * 122.53817 * 359.97438 * 5 4 2 31 31 H 1.07991 * 122.54428 * 180.02562 * 6 5 4 32 32 H 1.07997 * 125.20212 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47122 * 65.89460 * 10 9 2 34 34 H 1.09000 * 109.47257 * 185.88903 * 10 9 2 35 35 H 1.09001 * 109.47481 * 305.89050 * 10 9 2 36 36 H 1.08998 * 109.47324 * 30.04615 * 15 14 13 37 37 H 1.09003 * 109.47093 * 150.04572 * 15 14 13 38 38 H 1.09000 * 109.47465 * 299.99899 * 16 15 14 39 39 H 1.08999 * 109.47322 * 60.00328 * 16 15 14 40 40 H 0.97001 * 119.99845 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47013 * 95.59500 * 26 25 11 42 42 H 1.09000 * 109.46995 * 215.58993 * 26 25 11 43 43 H 1.08994 * 109.47631 * 335.58714 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.4672 -0.1119 2.3403 6 6 2.8803 -0.9719 3.3432 7 6 2.7804 -2.2689 3.0480 8 16 2.1279 -2.4559 1.4254 9 7 2.0196 -0.6925 -1.1995 10 6 3.4850 -0.7946 -1.1872 11 6 1.5753 -0.0641 -2.3519 12 7 1.7927 1.1841 -2.6931 13 7 1.2381 1.4301 -3.8260 14 6 0.6307 0.3650 -4.2668 15 6 -0.1422 0.2462 -5.5550 16 6 -1.6073 0.6100 -5.3062 17 6 -2.3801 0.4918 -6.5945 18 1 -1.8767 0.1872 -7.5002 19 6 -3.7300 0.7715 -6.6169 20 7 -4.4043 0.6688 -7.7414 21 14 -4.6009 1.2976 -5.0503 22 1 -4.5493 2.7767 -4.9281 23 1 -6.0173 0.8541 -5.0986 24 1 -3.9286 0.6803 -3.8790 25 7 0.8238 -0.6248 -3.3434 26 6 0.3267 -2.0015 -3.4053 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 2.4949 0.9623 2.4482 31 1 3.2543 -0.6195 4.2931 32 1 3.0552 -3.0801 3.7059 33 1 3.7973 -1.4403 -0.3665 34 1 3.8278 -1.2164 -2.1320 35 1 3.9172 0.1971 -1.0540 36 1 0.2800 0.9251 -6.2959 37 1 -0.0796 -0.7779 -5.9232 38 1 -2.0295 -0.0689 -4.5653 39 1 -1.6700 1.6340 -4.9381 40 1 -5.3539 0.8659 -7.7573 41 1 -0.6938 -2.0368 -3.0237 42 1 0.3402 -2.3465 -4.4391 43 1 0.9638 -2.6455 -2.7991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339913483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:55 Heat of formation + Delta-G solvation = 121.434081 kcal Electronic energy + Delta-G solvation = -24648.611881 eV Core-core repulsion = 21243.433076 eV Total energy + Delta-G solvation = -3405.178805 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.75987 -39.00802 -37.25947 -34.93905 -33.96827 -32.38341 -31.68927 -29.35606 -28.66461 -27.44314 -25.86567 -25.24769 -24.66096 -22.60898 -21.58714 -20.37082 -20.00934 -19.59108 -17.52911 -17.16184 -16.81679 -16.19903 -15.90125 -15.65915 -15.00441 -14.56415 -14.24926 -13.88825 -13.51850 -13.45147 -13.22700 -13.17200 -12.93051 -12.79126 -12.59716 -12.48786 -12.39021 -11.92291 -11.90611 -11.67938 -11.60071 -11.32104 -11.10333 -10.94970 -10.52402 -10.40833 -10.06450 -9.87836 -9.86852 -9.32197 -8.99442 -8.97317 -8.67369 -8.60866 -8.56410 -6.11834 -4.11365 0.69305 1.37125 1.79309 1.94221 2.34503 2.51181 3.10805 3.27592 3.34936 3.37778 3.60664 4.29330 4.39199 4.73961 4.78289 4.80369 4.89550 4.99254 5.08132 5.19536 5.21829 5.23127 5.24582 5.28570 5.42054 5.45901 5.54746 5.57942 5.64775 5.74112 5.79685 5.96613 5.99055 6.13695 6.15786 6.19653 6.27130 6.46948 6.47897 6.78345 7.10666 7.23469 7.32644 7.66884 8.42171 8.91293 9.01150 9.49824 11.01053 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.003089 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.925046 B = 9062.009727 C = 9533.173124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.164 3.836 3 H 0.080 0.920 4 C -0.168 4.168 5 C -0.135 4.135 6 C -0.134 4.134 7 C -0.226 4.226 8 S 0.135 5.865 9 N -0.461 5.461 10 C 0.033 3.967 11 C 0.324 3.676 12 N -0.311 5.311 13 N -0.295 5.295 14 C 0.211 3.789 15 C -0.023 4.023 16 C -0.003 4.003 17 C -0.523 4.523 18 H 0.076 0.924 19 C 0.071 3.929 20 N -0.899 5.899 21 Si 0.878 3.122 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.268 1.268 25 N -0.465 5.465 26 C 0.080 3.920 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.162 0.838 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.014 0.986 39 H 0.020 0.980 40 H 0.264 0.736 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.156 -8.768 21.486 27.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.055 3.945 3 H 0.097 0.903 4 C -0.286 4.286 5 C -0.166 4.166 6 C -0.165 4.165 7 C -0.362 4.362 8 S 0.399 5.601 9 N -0.187 5.187 10 C -0.115 4.115 11 C -0.033 4.033 12 N -0.155 5.155 13 N -0.135 5.135 14 C -0.056 4.056 15 C -0.062 4.062 16 C -0.042 4.042 17 C -0.561 4.561 18 H 0.094 0.906 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.705 3.295 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.193 1.193 25 N -0.158 5.158 26 C -0.063 4.063 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.179 0.821 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.941 -9.097 20.573 27.004 hybrid contribution -0.424 0.808 1.754 1.977 sum 14.517 -8.289 22.326 27.891 Atomic orbital electron populations 1.21871 0.92483 1.02991 1.02733 1.20118 0.95926 0.95143 0.83330 0.90259 1.24368 1.07881 0.96890 0.99463 1.20121 1.02231 1.01392 0.92879 1.20113 1.03386 0.92288 1.00696 1.25781 1.08989 1.00671 1.00752 1.84453 1.61989 1.03785 1.09905 1.58672 1.12364 1.50011 0.97657 1.22480 0.83830 1.01940 1.03222 1.21946 0.99912 0.89788 0.91606 1.74490 1.20950 1.11219 1.08886 1.74067 1.12279 1.22207 1.04972 1.25660 1.00192 0.84099 0.95629 1.20250 0.95763 1.03022 0.87212 1.19535 0.89663 0.96761 0.98216 1.21005 0.93605 1.46901 0.94590 0.90586 1.24963 0.97445 0.94699 0.95951 1.69901 1.08746 1.49165 1.25920 0.86813 0.78808 0.79576 0.84290 1.20049 1.21273 1.19315 1.46229 1.39700 1.12710 1.17147 1.22022 1.00943 0.78695 1.04637 0.91929 0.91574 0.91100 0.84298 0.84430 0.82062 0.89981 0.91104 0.93541 0.88664 0.90520 0.96817 0.96125 0.92575 0.90079 0.89098 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.05 37.16 0.34 -1.39 16 2 C 0.16 1.89 2.42 -68.86 -0.17 1.73 16 3 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 4 C -0.17 -1.64 4.17 -36.00 -0.15 -1.79 16 5 C -0.14 -1.18 10.04 -41.21 -0.41 -1.60 16 6 C -0.13 -1.03 10.18 -41.21 -0.42 -1.45 16 7 C -0.23 -1.69 11.23 29.04 0.33 -1.37 16 8 S 0.13 1.17 21.91 -107.50 -2.36 -1.18 16 9 N -0.46 -5.65 4.41 -176.08 -0.78 -6.43 16 10 C 0.03 0.35 9.06 60.06 0.54 0.90 16 11 C 0.32 5.03 5.01 -318.87 -1.60 3.43 16 12 N -0.31 -5.78 12.11 30.32 0.37 -5.41 16 13 N -0.30 -6.02 12.18 32.99 0.40 -5.61 16 14 C 0.21 3.92 7.32 -154.02 -1.13 2.80 16 15 C -0.02 -0.44 5.53 -27.88 -0.15 -0.59 16 16 C 0.00 -0.07 4.02 -27.88 -0.11 -0.19 16 17 C -0.52 -14.30 9.66 -34.44 -0.33 -14.63 16 18 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.07 2.03 5.47 -17.81 -0.10 1.93 16 20 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 21 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 25 N -0.47 -7.28 3.21 -121.46 -0.39 -7.67 16 26 C 0.08 0.94 11.00 59.85 0.66 1.60 16 27 H 0.06 0.93 7.22 -51.93 -0.38 0.56 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 31 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.08 0.75 6.23 -51.93 -0.32 0.43 16 34 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 35 H 0.05 0.53 8.12 -51.93 -0.42 0.10 16 36 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 37 H 0.08 1.32 7.40 -51.93 -0.38 0.93 16 38 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 39 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 0.97 7.43 -51.93 -0.39 0.58 16 43 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -32.39 368.57 -10.26 -42.65 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.46 Total: -1.90 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.71 Total: -10.62 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.38 Total: -51.41 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.36 Total: -1.18 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.39 -10.26 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339913483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.085 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds